Clone BS04643 Report

Search the DGRC for BS04643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5645-RA
Protein status:BS04643.pep: full length peptide match
Sequenced Size:2600

Clone Sequence Records

BS04643.complete Sequence

2600 bp assembled on 2009-12-07

GenBank Submission: KX797031

> BS04643.complete
GAAGTTATCAGTCGACATGAATAATAATCTTTTTGAGGGCTCCGACGACG
ATGGGGAGGATCTGCAGCTGTCCACGAACAAGGACTATGCCAAGACCTAC
AACATCCTGCGCAAGAAAGAGCTACTACAGAAATATAAGGATCGTGGCTT
GGATGTTTCCGAATCGGAATTCGACAGTGACAGCTCGTCATCCGAGGAGG
ACGAGGTGGACCCCAAATTCGACCAGGACTTCTTCAAGACCCTGTCCTCG
CTGAAAAGTAAAGACCCATGTATCTACGACAAGGGTACGAAATTCTTCAG
TGAGTCCTCCGGCGATGAAGATGATAAGGATGGGGAGGCTCCGAAAAAGA
AGAAAAAAGCCAAGCCAGTCACTTTGAAGGACTACGAACGAAAGGTAATT
TTGGAGCATAATGGCAAGTTCGAGAGTTCAGATGAGGAGCAGCAGGAAAA
GGAGCACGAGGAACTCCAACGTGCGCAGTCACCGAGCGCCGTGGAGGAGG
AGCGCCGTCTAAAGGCCGAGTTCCGGAAGGTGATGAACAAGGAAGACGAC
AGTGAGGATGAGGAATTTGGAGGTATATTCAAGAAGCGCAGTAAGACCAA
GGAGCAAACAGCTGCCGAGGAGGCAGACTTTGCCAAATGGTTGGCGGGAA
AACAAGCTGAGATTCAAGAAACCGACAAGAAGCAGTTGGAGCCTCTAAAA
CAGTACTGGAGCAGCAACAAGCTGACCCAGGGCGAGAGTTTCCTCAGGGA
TTACATTCTCAACAAGGGCTATGCAAACACGGATGAGTCCGCCATTCCCA
CCTACGATGAGATCGTGGGCGAAGCTGCTCCGCTCTCCGAGGATGAGCAG
GAACTTGAGAAGCAGGCAGAGTTTGAGCACAAGTACAATTTCCGCTTTGA
GGAGCCAGATGCGGACTTCATAAAGCGCTATCCCCGCACCATCGAACAAT
CCCTGCGTCGCACGGATGACAAGAGGAAAGAAAAACGCAAGGAGCTGAAG
GAGCGCAAGGATCAGGAGAAACAGCAAAAGATGAAGGAGTTGGAACTGGT
CAAGGAAATGAAGCGTAAGGAGATCGATGAAAAGATACGCAAATTAAAAG
CGGTCACTGGCAACGATGAGCTTGGTTTCCGGGACGAAGAACTCGAGGAG
GACTTTGACCCGGCGGCCCACGATCGTCGAATGCAGGAGCTCTTCGACGA
TGAGTACTACAATGTCGATGAAGGCGAGGAGAAACCAGAATGTCCCTCGG
ATATCGATGAATTGGTGCTGGAAGATTGGGATAACTACGATCCTAGACAG
CACGCCAATGGGGGCGGTGAGGATTATGAAGGACACTGCGAGGACGACGA
CTTCAACATGGATTGCGACTACGATCCGTCCACGGCCAAGGAGCAACTTC
AACAAGAGCTCATCGAAAACACTCGTGGTCGCAAAGGACGAAAGGGTAGA
CGAAATCGCTTTATGGAAATGATCCAGGCGGAAAAGCCTGCATTCAATCC
TGAGGACGAAAAGACGTACAGTGAGTACATCGATGAGTACTACCAAATGG
ATTGCGAGGACATCATCGGGGATCAACCGTGTCGATTTAAATATGTGGAA
ACCACACCAAACGATTTCGGTTTGACGATAGAAGAGATCTTGCTGGCCAA
GAACAAGGAGCTTAACCAGTGGGCTAGCTTAAAGAAAGCTGTCCAAAACA
GACCGGAACACGTAGAGAAAAAGGAGCAGCGTCTCTACAAGATGAAAGCC
AAGAATGAAGACCTTAAGCGAAAGATATTTAAGAGTCTTTATGGAGAAGG
TTCTGACGATGAGGAGCAGCCAGCAGAAGAGAAACCAGAAGTGACACCAG
CTGAAGCGACAGCTCCAGCCGAAAATGGTCAAGTCTCGACAGAAGGTTTG
TCCAAATCAAAGAGGAAACGCCTGAAACGTAAGGCTGCCGCAGCAGCAGC
CAGTGCTCCTAAGGTTCTAAAAGAAGAAAGTGACTCCAAGGATCCAAAGG
AAGCGGATGGATCTACTGAAGATGTCCAGGCAGAAAGTTCTAAGAAAAAA
GTCGATACTCCCTCTAAAAAGGGCAAAGATGACGCAAATCAGGAAACTAA
AAACAGTCCACAAAGCACGGAGAAAACGAAAAACAATAATGCCTTAAAAA
ATAACAAAAAAGAGCCTAAAAACGTGCAAAATGGATTCCAAAAACCCCAA
AATCAAGCAAATAAAAGTGCAAAGACAAAGTCGAACCAACCATTTAAAAC
TACGGAAAGTGCGCCTGCAAAAGCAGAAAAATCAAATGGTAATAATCCTT
TCAATAAGCCACAATCGAAATCCCAACAAAGGCAGGAACTGCCACCAATT
CATAAAAATCAAGGTGGAAACAAAAAGGGACCGAGAAACGCTAACGGCAC
CAATCCCTTTAAGAAATCAAACCAAAAGCCAAGTGCACCCTTCCCAGCTA
AGAAAACGAACAACTTTAAGGCGAAAAACAAGCAAAATAACAATAGTGGA
ATAACCGACGATCGATTAAAGGCATATGGCATAAATCCCAGAAAATTCCA
CAAGCGGGAAAAATATGGAAAAAAGGATAACTAAAAGCTTTCTAGACCAT

BS04643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2568 CG5645-PA 1..2568 17..2584 12840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 73..2641 17..2585 12845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12134949..12136450 1636..135 7510 100 Minus
3L 28110227 3L 12133875..12134660 2585..1800 3930 100 Minus
3L 28110227 3L 12134725..12134894 1800..1631 835 99.4 Minus
3L 28110227 3L 12136512..12136634 139..17 600 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 02:15:52 has no hits.

BS04643.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:55 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 70..2635 17..2582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:02 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..2638 17..2582 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:30 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 70..2635 17..2582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:25 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..2638 17..2582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:25 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12136517..12136634 17..134 100   Minus
3L 12134725..12134888 1637..1800 100 <- Minus
3L 12134949..12136450 135..1636 100 <- Minus
3L 12133878..12134659 1801..2582 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:02 Download gff for BS04643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12127825..12127988 1637..1800 100 <- Minus
arm_3L 12126978..12127759 1801..2582 100 <- Minus
arm_3L 12128049..12129550 135..1636 100 <- Minus
arm_3L 12129617..12129734 17..134 100   Minus

BS04643.3prime Sequence

876 bp (796 high quality bases) assembled on 2005-12-02

> BS04643.3prime
ATGGTCTAGAAAGCTTTTAGTTATCCTTTTTTCCATATTTTTCCCGCTTG
TGGAATTTTCTGGGATTTATGCCATATGCCTTTAATCGATCGTCGGTTAT
TCCACTATTGTTATTTTGCTTGTTTTTCGCCTTAAAGTTGTTCGTTTTCT
TAGCTGGGAAGGGTGCACTTGGCTTTTGGTTTGATTTCTTAAAGGGATTG
GTGCCGTTAGCGTTTCTCGGTCCCTTTTTGTTTCCACCTTGATTTTTATG
AATTGGTGGCAGTTCCTGCCTTTGTTGGGATTTCGATTGTGGCTTATTGA
AAGGATTATTACCATTTGATTTTTCTGCTTTTGCAGGCGCACTTTCCGTA
GTTTTAAATGGTTGGTTCGACTTTGTCTTTGCACTTTTATTTGCTTGATT
TTGGGGTTTTTGGAATCCATTTTGCACGTTTTTAGGCTCTTTTTTGTTAT
TTTTTAAGGCATTATTGTTTTTCGTTTTCTCCGTGCTTTGTGGACTGTTT
TTAGTTTCCTGATTTGCGTCATCTTTGCCCTTTTTAGAGGGAGTATCGAC
TTTTTTCTTAGAACTTTCTGCCTGGACATCTTCAGTAGATCCATCCGCTT
CCTTTGGATCCTTGGAGTCACTTTCTTCTTTTAGAACCTTAGGAGCACTG
GCTGCTGCTGCGGCAGCCTTACGTTTCAGGCGTTTCCTCTTTGATTTGGA
CAAACCTTCTGTCGAGACTTGACCATTTTCGGCTGGAGCTGTCGCTTCAG
CTGGTGTCACTTCTGGTTTCTCTTCTGCTGGCTGCTCCTCATCGTCAGAA
CCTTCTCCATAAAGACTCTTAAATATCTTTCGCTTAAGGTCTTCATTCTT
GGCTTTCATCTTGTAGAGACGCTGCT

BS04643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 2568 CG5645-RA 1709..2568 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 1781..2641 876..16 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12133875..12134660 16..801 3930 100 Plus
3L 28110227 3L 12134725..12134800 801..876 380 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:47:43 has no hits.

BS04643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:43 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1709..2568 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:52 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1709..2568 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:56 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 1781..2646 11..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:36 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 1781..2646 11..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:36 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12133870..12134659 11..800 99 <- Plus
3L 12134725..12134800 801..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:56 Download gff for BS04643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12126970..12127759 11..800 99 <- Plus
arm_3L 12127825..12127900 801..876 100   Plus

BS04643.5prime Sequence

888 bp (838 high quality bases) assembled on 2005-12-02

> BS04643.5prime
GAAGTTATCAGTCGACATGAATAATAATCTTTTTGAGGGCTCCGACGACG
ATGGGGAGGATCTGCAGCTGTCCACGAACAAGGACTATGCCAAGACCTAC
AACATCCTGCGCAAGAAAGAGCTACTACAGAAATATAAGGATCGTGGCTT
GGATGTTTCCGAATCGGAATTCGACAGTGACAGCTCGTCATCCGAGGAGG
ACGAGGTGGACCCCAAATTCGACCAGGACTTCTTCAAGACCCTGTCCTCG
CTGAAAAGTAAAGACCCATGTATCTACGACAAGGGTACGAAATTCTTCAG
TGAGTCCTCCGGCGATGAAGATGATAAGGATGGGGAGGCTCCGAAAAAGA
AGAAAAAAGCCAAGCCAGTCACTTTGAAGGACTACGAACGAAAGGTAATT
TTGGAGCATAATGGCAAGTTCGAGAGTTCAGATGAGGAGCAGCAGGAAAA
GGAGCACGAGGAACTCCAACGTGCGCAGTCACCGAGCGCCGTGGAGGAGG
AGCGCCGTCTAAAGGCCGAGTTCCGGAAGGTGATGAACAAGGAAGACGAC
AGTGAGGATGAGGAATTTGGAGGTATATTCAAGAAGCGCAGTAAGACCAA
GGAGCAAACAGCTGCCGAGGAGGCAGACTTTGCCAAATGGTTGGCGGGAA
AACAAGCTGAGATTCAAGAAACCGACAAGAAGCAGTTGGAGCCTCTAAAA
CAGTACTGGAGCAGCAACAAGCTGACCCAGGGCGAGAGTTTCCTCAGGGA
TTACATTCTCAACAAGGGCTATGCAAACACGGATGAGTCCGCCATTCCCA
CCTACGATGAGATCGTGGGCGAAGCTGCTCCGCTCTCCGAGGATGAGCAG
GAACTTGAGAAGCAGGCAGAGTTTGAGCACAAGTAACA

BS04643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 2568 CG5645-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-RA 2745 CG5645-RA 73..941 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12135700..12136450 885..135 3755 100 Minus
3L 28110227 3L 12136512..12136634 139..17 600 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 11:20:59 has no hits.

BS04643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:44 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1..870 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:54 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-PA 1..870 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:29 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..942 17..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:44 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5645-RA 73..942 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:44 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12136517..12136635 16..134 99 -> Minus
3L 12135699..12136450 135..887 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:29 Download gff for BS04643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12128799..12129550 135..887 99 <- Minus
arm_3L 12129617..12129735 16..134 99 -> Minus

BS04643.pep Sequence

Translation from 16 to 2583

> BS04643.pep
MNNNLFEGSDDDGEDLQLSTNKDYAKTYNILRKKELLQKYKDRGLDVSES
EFDSDSSSSEEDEVDPKFDQDFFKTLSSLKSKDPCIYDKGTKFFSESSGD
EDDKDGEAPKKKKKAKPVTLKDYERKVILEHNGKFESSDEEQQEKEHEEL
QRAQSPSAVEEERRLKAEFRKVMNKEDDSEDEEFGGIFKKRSKTKEQTAA
EEADFAKWLAGKQAEIQETDKKQLEPLKQYWSSNKLTQGESFLRDYILNK
GYANTDESAIPTYDEIVGEAAPLSEDEQELEKQAEFEHKYNFRFEEPDAD
FIKRYPRTIEQSLRRTDDKRKEKRKELKERKDQEKQQKMKELELVKEMKR
KEIDEKIRKLKAVTGNDELGFRDEELEEDFDPAAHDRRMQELFDDEYYNV
DEGEEKPECPSDIDELVLEDWDNYDPRQHANGGGEDYEGHCEDDDFNMDC
DYDPSTAKEQLQQELIENTRGRKGRKGRRNRFMEMIQAEKPAFNPEDEKT
YSEYIDEYYQMDCEDIIGDQPCRFKYVETTPNDFGLTIEEILLAKNKELN
QWASLKKAVQNRPEHVEKKEQRLYKMKAKNEDLKRKIFKSLYGEGSDDEE
QPAEEKPEVTPAEATAPAENGQVSTEGLSKSKRKRLKRKAAAAAASAPKV
LKEESDSKDPKEADGSTEDVQAESSKKKVDTPSKKGKDDANQETKNSPQS
TEKTKNNNALKNNKKEPKNVQNGFQKPQNQANKSAKTKSNQPFKTTESAP
AKAEKSNGNNPFNKPQSKSQQRQELPPIHKNQGGNKKGPRNANGTNPFKK
SNQKPSAPFPAKKTNNFKAKNKQNNNSGITDDRLKAYGINPRKFHKREKY
GKKDN*

BS04643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5645-PA 855 CG5645-PA 1..855 1..855 4487 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 4239..5010 1..756 222 19.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 4278..5049 1..756 222 19.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 4239..5010 1..756 222 19.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 4278..5049 1..756 222 19.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4109..4875 47..749 219 21.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4148..4914 47..749 219 21.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4109..4875 47..749 219 21.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3442..4165 34..756 218 21.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3549..4295 26..756 218 20.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 3481..4204 34..756 218 21.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3588..4334 26..756 218 20.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 3442..4165 34..756 218 21.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3549..4295 26..756 218 20.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4174..4944 1..755 216 19.2 Plus
Strn-Mlck-PV 7944 CG44162-PV 4213..4983 1..755 216 19.2 Plus
Strn-Mlck-PS 8216 CG44162-PS 4174..4944 1..755 216 19.2 Plus
Strn-Mlck-PT 7905 CG44162-PT 3659..4425 9..756 211 20.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 3698..4464 9..756 211 20.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 3659..4425 9..756 211 20.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4044..4815 1..756 208 20.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 4083..4854 1..756 208 20.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 4044..4815 1..756 208 20.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 4394..5077 26..756 205 19.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 4433..5116 26..756 205 19.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 4394..5077 26..756 205 19.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4634..5212 9..698 184 20.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 4673..5251 9..698 184 20.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 4634..5212 9..698 184 20.4 Plus