Clone BS04644 Report

Search the DGRC for BS04644

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptkappaB-Ras-RA
Protein status:BS04644.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04644.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-02

> BS04644.3prime
ATGGTCTAGAAAGCTTCTAAGCCTCGCTCTTCTGCCGGTTCTGCATAACT
TGGCGCAGCTGAGGGAACGTGCTCTTCGTCTGCATTGGGTGCAGCCGGGC
GCAGAGCGTGGTGAATGGCTCGTAGAGGGAGGGACGCTCCATGGCGTTCA
CCGTGTAGTGCTTTATGCGCTCTCGCTGGCACCAGATGTTGGCGCGGTCC
ATGACCTTCTCGACGGGATTTGGGGCTGCTCGTGCCCTCACGTTGGCCAG
CACCACAACGGGAATCTCCTTCTTCTCCTTGTGCTTCTCAATGTCAGCCT
TGATGTCGGCCAGCATGTCAAGGCTGCGCGGATCCATGGGATCGTAGACC
AGAACGAATGCATCTGGAAACTGAAGGTAGTGGCGTGGCAGCTGCTGCTG
CTCGCCCTGCAATCCGGCCGTGTCGTAGATGCGCAGGGTCTCTCGGGCTC
CGCCCCTGCCTGTATCCACGCTGGCCACGTAGATATCCTCAATGGTTGGA
TGCAGTTCCGTTTCGGGATTGACGTGGCCGTAGACCAGCTGCTCTATCAG
CGCCGTCTTGCCCACGCCCTTCATCCCGCACACCAGTACCTTGCCGACCT
TCCCGATCTTGGCATTTAGCATGTCGACTGATAACT

BS04644.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 1..606 622..17 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..703 622..17 3030 100 Minus
kappaB-Ras-RB 1842 CG1669-RB 98..703 622..17 3030 100 Minus
kappaB-Ras-RC 933 CG1669-RC 98..703 622..17 3030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445026..7445518 17..509 2465 100 Plus
2R 25286936 2R 7445581..7445695 508..622 575 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:02:50 has no hits.

BS04644.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:45 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:55 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:55:36 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..712 5..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:28 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..712 5..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:28 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445017..7445517 5..508 99 <- Plus
2R 7445582..7445695 509..622 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:55:36 Download gff for BS04644.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3333087..3333200 509..622 100   Plus
arm_2R 3332522..3333022 5..508 99 <- Plus

BS04644.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-02

> BS04644.5prime
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTTAGAAGCTTTCTAGACC

BS04644.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1669-PA 606 kappaB-Ras-RA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..703 17..622 3030 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 98..703 17..622 3030 100 Plus
kappaB-Ras-RC 933 CG1669-RC 98..703 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445026..7445518 622..130 2465 100 Minus
2R 25286936 2R 7445581..7445695 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:15:13 has no hits.

BS04644.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:46 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:56 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1669-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:30:50 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..712 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:18 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..712 17..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:18 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7445017..7445517 131..634 99 <- Minus
2R 7445582..7445695 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:30:50 Download gff for BS04644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332522..3333022 131..634 99 <- Minus
arm_2R 3333087..3333200 17..130 100   Minus

BS04644.complete Sequence

638 bp (638 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634985

> BS04644.complete
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTTAGAAGCTTTCTAGACCAT

BS04644.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-RB 606 CG1669-PB 1..606 17..622 3030 100 Plus
kappaB-Ras-RC 606 CG1669-PC 1..606 17..622 3030 100 Plus
kappaB-Ras-RA 606 CG1669-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30503-RB 1842 CG30503-RB 98..703 17..622 3030 100 Plus
kappaB-Ras-RB 1842 CG1669-RB 98..703 17..622 3030 100 Plus
kappaB-Ras-RC 933 CG1669-RC 98..703 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7445026..7445518 622..130 2465 100 Minus
2R 25286936 2R 7445581..7445695 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:24 has no hits.

BS04644.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:44 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RB 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:36 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 67..681 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:57 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RA 98..703 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:45 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
CG30503-RB 67..681 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:47 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
kappaB-Ras-RC 98..703 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:47 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7445026..7445517 131..622 100 <- Minus
2R 7445582..7445695 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:57 Download gff for BS04644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3332531..3333022 131..622 100 <- Minus
arm_2R 3333087..3333200 17..130 100   Minus

BS04644.pep Sequence

Translation from 16 to 621

> BS04644.pep
MLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNPETELHPTIEDIYVA
SVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFPDAFVLVYDPMDPRS
LDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNPVEKVMDRANIWCQR
ERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTFPQLRQVMQNRQKSE
A*

BS04644.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
kappaB-Ras-PB 201 CG1669-PB 1..201 1..201 1047 100 Plus
kappaB-Ras-PC 201 CG1669-PC 1..201 1..201 1047 100 Plus
kappaB-Ras-PA 201 CG1669-PA 1..201 1..201 1047 100 Plus