Clone Sequence Records
BS04644.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-02
> BS04644.3prime
ATGGTCTAGAAAGCTTCTAAGCCTCGCTCTTCTGCCGGTTCTGCATAACT
TGGCGCAGCTGAGGGAACGTGCTCTTCGTCTGCATTGGGTGCAGCCGGGC
GCAGAGCGTGGTGAATGGCTCGTAGAGGGAGGGACGCTCCATGGCGTTCA
CCGTGTAGTGCTTTATGCGCTCTCGCTGGCACCAGATGTTGGCGCGGTCC
ATGACCTTCTCGACGGGATTTGGGGCTGCTCGTGCCCTCACGTTGGCCAG
CACCACAACGGGAATCTCCTTCTTCTCCTTGTGCTTCTCAATGTCAGCCT
TGATGTCGGCCAGCATGTCAAGGCTGCGCGGATCCATGGGATCGTAGACC
AGAACGAATGCATCTGGAAACTGAAGGTAGTGGCGTGGCAGCTGCTGCTG
CTCGCCCTGCAATCCGGCCGTGTCGTAGATGCGCAGGGTCTCTCGGGCTC
CGCCCCTGCCTGTATCCACGCTGGCCACGTAGATATCCTCAATGGTTGGA
TGCAGTTCCGTTTCGGGATTGACGTGGCCGTAGACCAGCTGCTCTATCAG
CGCCGTCTTGCCCACGCCCTTCATCCCGCACACCAGTACCTTGCCGACCT
TCCCGATCTTGGCATTTAGCATGTCGACTGATAACT
BS04644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1669-PA | 606 | kappaB-Ras-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..703 | 622..17 | 3030 | 100 | Minus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..703 | 622..17 | 3030 | 100 | Minus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..703 | 622..17 | 3030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445026..7445518 | 17..509 | 2465 | 100 | Plus |
2R | 25286936 | 2R | 7445581..7445695 | 508..622 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:02:50 has no hits.
BS04644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:45 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:55 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:55:36 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..712 | 5..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:28 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..712 | 5..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:28 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445017..7445517 | 5..508 | 99 | <- | Plus |
2R | 7445582..7445695 | 509..622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:55:36 Download gff for
BS04644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3333087..3333200 | 509..622 | 100 | | Plus |
arm_2R | 3332522..3333022 | 5..508 | 99 | <- | Plus |
BS04644.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-02
> BS04644.5prime
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTTAGAAGCTTTCTAGACC
BS04644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1669-PA | 606 | kappaB-Ras-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..703 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..703 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..703 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445026..7445518 | 622..130 | 2465 | 100 | Minus |
2R | 25286936 | 2R | 7445581..7445695 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:15:13 has no hits.
BS04644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:46 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:56 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1669-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:30:50 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..712 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:47:18 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..712 | 17..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:47:18 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445017..7445517 | 131..634 | 99 | <- | Minus |
2R | 7445582..7445695 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:30:50 Download gff for
BS04644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3332522..3333022 | 131..634 | 99 | <- | Minus |
arm_2R | 3333087..3333200 | 17..130 | 100 | | Minus |
BS04644.complete Sequence
638 bp (638 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634985
> BS04644.complete
GAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGGCAAGG
TACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAGAGCAG
CTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACCATTGA
GGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCGAGAGA
CCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGCAGCTG
CCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTACGATCC
CATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGACATTG
AGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCAACGTG
AGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGCGCCAA
CATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGCCATGG
AGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGCTGCAC
CCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATGCAGAA
CCGGCAGAAGAGCGAGGCTTAGAAGCTTTCTAGACCAT
BS04644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaB-Ras-RB | 606 | CG1669-PB | 1..606 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RC | 606 | CG1669-PC | 1..606 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RA | 606 | CG1669-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30503-RB | 1842 | CG30503-RB | 98..703 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RB | 1842 | CG1669-RB | 98..703 | 17..622 | 3030 | 100 | Plus |
kappaB-Ras-RC | 933 | CG1669-RC | 98..703 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7445026..7445518 | 622..130 | 2465 | 100 | Minus |
2R | 25286936 | 2R | 7445581..7445695 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:24 has no hits.
BS04644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:44 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RB | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:36 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 67..681 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:57 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RA | 98..703 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:45 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30503-RB | 67..681 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:47 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kappaB-Ras-RC | 98..703 | 17..622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:47 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7445026..7445517 | 131..622 | 100 | <- | Minus |
2R | 7445582..7445695 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:57 Download gff for
BS04644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3332531..3333022 | 131..622 | 100 | <- | Minus |
arm_2R | 3333087..3333200 | 17..130 | 100 | | Minus |
BS04644.pep Sequence
Translation from 16 to 621
> BS04644.pep
MLNAKIGKVGKVLVCGMKGVGKTALIEQLVYGHVNPETELHPTIEDIYVA
SVDTGRGGARETLRIYDTAGLQGEQQQLPRHYLQFPDAFVLVYDPMDPRS
LDMLADIKADIEKHKEKKEIPVVVLANVRARAAPNPVEKVMDRANIWCQR
ERIKHYTVNAMERPSLYEPFTTLCARLHPMQTKSTFPQLRQVMQNRQKSE
A*
BS04644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kappaB-Ras-PB | 201 | CG1669-PB | 1..201 | 1..201 | 1047 | 100 | Plus |
kappaB-Ras-PC | 201 | CG1669-PC | 1..201 | 1..201 | 1047 | 100 | Plus |
kappaB-Ras-PA | 201 | CG1669-PA | 1..201 | 1..201 | 1047 | 100 | Plus |