Clone Sequence Records
BS04645.3prime Sequence
969 bp (888 high quality bases) assembled on 2005-12-02
> BS04645.3prime
ATGGTCTAGAAAGCTTCTACAAATCTTTGGATGCCTTGGACACCAGCTTT
GGCAGCTGCAGCATAAGTCCCATGTGCTGTAGTGGATTCGCCGAGGAGAG
ACTCGAGGTAGTGGATAGCGTTCCATTGACATTCTCCCTGGGATGCGGCT
GCGCTGGGTGGGTTGATGAGGCTGACTGCTCGGAATGGAATATCTCGCCA
AGCAGGTCGTACACACGTCGCTTGAAGTACAGCTTCTGGTGGAAGTTCAT
GTGCTTGATTTCGGGACGCAGTCCCTGCAGGAATGCGTCATCGAAATCCA
TGATTGGCAATGCTTCAATACAGCGGGTTGATGTCTTGGCCTCCTTCTCA
CTGCTGTCGCTCTCTGTGCGCATTTCTGCCGGGACCGTGTCCTCGAAATC
CATGATTGATGATGGTTCATTATTAAATTGTGTTGCCTCAACGTCCGTCG
CCGATGCAGGGTCGGTGCTGTGACGGCTCTGCGCATGCTCCGAATTCAGA
AAGCTCGGGGAGTGCACCATCTCGAGGATTGCCTCTACGGGAGTTTCGGG
ATCCCCTTCGTCGTGCTCCTCCTGTCCCTTGGGTCTTGACCTACGACCTC
TGAGCGGAACGGGCACTCCGGGAGTGATGTGCTTTTGCAGGAACTTCAGC
TCGCTGTTAAGATAGTACGTATTCGCACCGTGATGCAACTTTATTGAGCG
GGCATAGCTGGAGCGAATGTTGCGCCAACGTTCCTTGCAGCTTTTAACCG
AATTTCGCATCTCATTGGATATTTCCTTCCACGCATTTTTCACAGTCGAT
TTCCGCAAGTAGTTGTCATCGTGACGATCGTAAAGACAAGGATGTAGTTT
CACCAAATGACATATTTTGGCATTGATGGCGTAAACGTTCGGTGGTGGAG
CTATGGACCGACGGCGTGTATTCATTTCATATATAAAAAGTGAATTAGGG
TTAAAAATGCTCCCATTAA
BS04645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PA | 1179 | CG3919-RA | 227..1179 | 969..17 | 4715 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 247..1199 | 969..17 | 4735 | 99.8 | Minus |
CG3919-RC | 1406 | CG3919-RC | 247..881 | 969..335 | 3145 | 99.7 | Minus |
CG3919-RC | 1406 | CG3919-RC | 925..1247 | 339..17 | 1600 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14412254..14412573 | 336..17 | 1600 | 100 | Minus |
3L | 28110227 | 3L | 14411495..14411811 | 752..436 | 1570 | 99.7 | Minus |
3L | 28110227 | 3L | 14411081..14411272 | 939..748 | 960 | 100 | Minus |
3L | 28110227 | 3L | 14412033..14412136 | 438..335 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:34:43 has no hits.
BS04645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:47 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 229..1179 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:58 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 229..1179 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:56:37 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 247..1202 | 11..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:07 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 247..1202 | 11..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:07 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14410872..14410901 | 940..969 | 93 | -> | Minus |
3L | 14411081..14411272 | 748..939 | 100 | -> | Minus |
3L | 14411500..14411810 | 437..747 | 100 | -> | Minus |
3L | 14412035..14412136 | 335..436 | 100 | -> | Minus |
3L | 14412256..14412576 | 11..334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:56:37 Download gff for
BS04645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14403972..14404001 | 940..969 | 93 | -> | Minus |
arm_3L | 14404181..14404372 | 748..939 | 100 | -> | Minus |
arm_3L | 14404600..14404910 | 437..747 | 100 | -> | Minus |
arm_3L | 14405135..14405236 | 335..436 | 100 | -> | Minus |
arm_3L | 14405356..14405676 | 11..334 | 99 | | Minus |
BS04645.5prime Sequence
945 bp (833 high quality bases) assembled on 2005-12-02
> BS04645.5prime
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGC
ATTGCCAATCATGGATTTCGATGACGCATTCCTGCAGGGACTGCG
BS04645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PA | 1179 | CG3919-RA | 1..929 | 17..945 | 4645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..949 | 16..945 | 4650 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..881 | 16..877 | 4310 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 925..997 | 873..945 | 350 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14411495..14411811 | 460..776 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 16..272 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 273..464 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412136 | 774..877 | 520 | 100 | Plus |
3L | 28110227 | 3L | 14412254..14412323 | 876..945 | 350 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 17..99 | 131 | 66.3 | Plus |
BS04645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:48 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:00 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:21:51 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..949 | 10..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:46 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..949 | 10..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:46 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14412035..14412136 | 776..877 | 100 | -> | Plus |
3L | 14412256..14412323 | 878..945 | 100 | | Plus |
3L | 14410639..14410901 | 10..272 | 98 | -> | Plus |
3L | 14411081..14411272 | 273..464 | 100 | -> | Plus |
3L | 14411500..14411810 | 465..775 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:21:51 Download gff for
BS04645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14403739..14404001 | 10..272 | 98 | -> | Plus |
arm_3L | 14404181..14404372 | 273..464 | 100 | -> | Plus |
arm_3L | 14404600..14404910 | 465..775 | 100 | -> | Plus |
arm_3L | 14405135..14405236 | 776..877 | 100 | -> | Plus |
arm_3L | 14405356..14405423 | 878..945 | 100 | | Plus |
BS04645.complete Sequence
1211 bp (1211 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634986
> BS04645.complete
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGC
ATTGCCAATCATGGATTTCGATGACGCATTCCTGCAGGGACTGCGTCCCG
AAATCAAGCACATGAACTTCCACCAGAAGCTGTACTTCAAGCGACGTGTG
TACGACCTGCTTGGCGAGATATTCCATTCCGAGCAGTCAGCCTCATCAAC
CCACCCAGCGCAGCCGCATCCCAGGGAGAATGTCAATGGAACGCTATCCA
CTACCTCGAGTCTCTCCTCGGCGAATCCACTACAGCACATGGGACTTATG
CTGCAGCTGCCAAAGCTGGTGTCCAAGGCATCCAAAGATTTGTAGAAGCT
TTCTAGACCAT
BS04645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 909 | CG3919-PB | 1..909 | 287..1195 | 4545 | 100 | Plus |
CG3919-RC | 957 | CG3919-PC | 1..591 | 287..877 | 2955 | 100 | Plus |
CG3919-RC | 957 | CG3919-PC | 635..957 | 873..1195 | 1600 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..1199 | 16..1195 | 5900 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..881 | 16..877 | 4310 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 925..1247 | 873..1195 | 1600 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14412254..14412573 | 876..1195 | 1600 | 100 | Plus |
3L | 28110227 | 3L | 14411495..14411811 | 460..776 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 16..272 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 273..464 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412136 | 774..877 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 17..99 | 131 | 66.3 | Plus |
BS04645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:00 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 1..909 | 287..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:14 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..1202 | 10..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:21 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 21..1199 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:00 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..1202 | 10..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:45 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 21..1199 | 17..1195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:45 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14412035..14412136 | 776..877 | 100 | -> | Plus |
3L | 14410646..14410901 | 17..272 | 100 | -> | Plus |
3L | 14411081..14411272 | 273..464 | 100 | -> | Plus |
3L | 14411500..14411810 | 465..775 | 100 | -> | Plus |
3L | 14412256..14412573 | 878..1195 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:21 Download gff for
BS04645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14403746..14404001 | 17..272 | 100 | -> | Plus |
arm_3L | 14404181..14404372 | 273..464 | 100 | -> | Plus |
arm_3L | 14404600..14404910 | 465..775 | 100 | -> | Plus |
arm_3L | 14405135..14405236 | 776..877 | 100 | -> | Plus |
arm_3L | 14405356..14405673 | 878..1195 | 100 | | Plus |
BS04645.pep Sequence
Translation from 16 to 1194
> BS04645.pep
MCFKIKNNCYLKLQHSFTTASLVGSSTKSQCSKLLNTCNSSNSGVHANNC
RVHGSNERLEPELNKPKLVIKALTSINWSIFKPNSLFIYEMNTRRRSIAP
PPNVYAINAKICHLVKLHPCLYDRHDDNYLRKSTVKNAWKEISNEMRNSV
KSCKERWRNIRSSYARSIKLHHGANTYYLNSELKFLQKHITPGVPVPLRG
RRSRPKGQEEHDEGDPETPVEAILEMVHSPSFLNSEHAQSRHSTDPASAT
DVEATQFNNEPSSIMDFEDTVPAEMRTESDSSEKEAKTSTRCIEALPIMD
FDDAFLQGLRPEIKHMNFHQKLYFKRRVYDLLGEIFHSEQSASSTHPAQP
HPRENVNGTLSTTSSLSSANPLQHMGLMLQLPKLVSKASKDL*
BS04645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PB | 302 | CG3919-PB | 1..302 | 91..392 | 1591 | 100 | Plus |
CG3919-PC | 318 | CG3919-PC | 1..318 | 91..392 | 1564 | 95 | Plus |
CG4404-PA | 308 | CG4404-PA | 15..98 | 108..186 | 178 | 38.1 | Plus |
CG3838-PB | 435 | CG3838-PB | 58..140 | 108..186 | 165 | 41 | Plus |
CG3838-PA | 435 | CG3838-PA | 58..140 | 108..186 | 165 | 41 | Plus |