Clone BS04645 Report

Search the DGRC for BS04645

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG3919-RB
Protein status:BS04645.pep: gold
Sequenced Size:16

Clone Sequence Records

BS04645.3prime Sequence

969 bp (888 high quality bases) assembled on 2005-12-02

> BS04645.3prime
ATGGTCTAGAAAGCTTCTACAAATCTTTGGATGCCTTGGACACCAGCTTT
GGCAGCTGCAGCATAAGTCCCATGTGCTGTAGTGGATTCGCCGAGGAGAG
ACTCGAGGTAGTGGATAGCGTTCCATTGACATTCTCCCTGGGATGCGGCT
GCGCTGGGTGGGTTGATGAGGCTGACTGCTCGGAATGGAATATCTCGCCA
AGCAGGTCGTACACACGTCGCTTGAAGTACAGCTTCTGGTGGAAGTTCAT
GTGCTTGATTTCGGGACGCAGTCCCTGCAGGAATGCGTCATCGAAATCCA
TGATTGGCAATGCTTCAATACAGCGGGTTGATGTCTTGGCCTCCTTCTCA
CTGCTGTCGCTCTCTGTGCGCATTTCTGCCGGGACCGTGTCCTCGAAATC
CATGATTGATGATGGTTCATTATTAAATTGTGTTGCCTCAACGTCCGTCG
CCGATGCAGGGTCGGTGCTGTGACGGCTCTGCGCATGCTCCGAATTCAGA
AAGCTCGGGGAGTGCACCATCTCGAGGATTGCCTCTACGGGAGTTTCGGG
ATCCCCTTCGTCGTGCTCCTCCTGTCCCTTGGGTCTTGACCTACGACCTC
TGAGCGGAACGGGCACTCCGGGAGTGATGTGCTTTTGCAGGAACTTCAGC
TCGCTGTTAAGATAGTACGTATTCGCACCGTGATGCAACTTTATTGAGCG
GGCATAGCTGGAGCGAATGTTGCGCCAACGTTCCTTGCAGCTTTTAACCG
AATTTCGCATCTCATTGGATATTTCCTTCCACGCATTTTTCACAGTCGAT
TTCCGCAAGTAGTTGTCATCGTGACGATCGTAAAGACAAGGATGTAGTTT
CACCAAATGACATATTTTGGCATTGATGGCGTAAACGTTCGGTGGTGGAG
CTATGGACCGACGGCGTGTATTCATTTCATATATAAAAAGTGAATTAGGG
TTAAAAATGCTCCCATTAA

BS04645.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-PA 1179 CG3919-RA 227..1179 969..17 4715 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 1358 CG3919-RB 247..1199 969..17 4735 99.8 Minus
CG3919-RC 1406 CG3919-RC 247..881 969..335 3145 99.7 Minus
CG3919-RC 1406 CG3919-RC 925..1247 339..17 1600 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14412254..14412573 336..17 1600 100 Minus
3L 28110227 3L 14411495..14411811 752..436 1570 99.7 Minus
3L 28110227 3L 14411081..14411272 939..748 960 100 Minus
3L 28110227 3L 14412033..14412136 438..335 520 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:34:43 has no hits.

BS04645.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:47 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-PA 229..1179 17..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:16:58 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-PA 229..1179 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:56:37 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 247..1202 11..969 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:07 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 247..1202 11..969 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:07 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14410872..14410901 940..969 93 -> Minus
3L 14411081..14411272 748..939 100 -> Minus
3L 14411500..14411810 437..747 100 -> Minus
3L 14412035..14412136 335..436 100 -> Minus
3L 14412256..14412576 11..334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:56:37 Download gff for BS04645.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14403972..14404001 940..969 93 -> Minus
arm_3L 14404181..14404372 748..939 100 -> Minus
arm_3L 14404600..14404910 437..747 100 -> Minus
arm_3L 14405135..14405236 335..436 100 -> Minus
arm_3L 14405356..14405676 11..334 99   Minus

BS04645.5prime Sequence

945 bp (833 high quality bases) assembled on 2005-12-02

> BS04645.5prime
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGC
ATTGCCAATCATGGATTTCGATGACGCATTCCTGCAGGGACTGCG

BS04645.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-PA 1179 CG3919-RA 1..929 17..945 4645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 1358 CG3919-RB 20..949 16..945 4650 100 Plus
CG3919-RC 1406 CG3919-RC 20..881 16..877 4310 100 Plus
CG3919-RC 1406 CG3919-RC 925..997 873..945 350 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14411495..14411811 460..776 1570 99.7 Plus
3L 28110227 3L 14410645..14410901 16..272 1285 100 Plus
3L 28110227 3L 14411081..14411272 273..464 960 100 Plus
3L 28110227 3L 14412033..14412136 774..877 520 100 Plus
3L 28110227 3L 14412254..14412323 876..945 350 100 Plus
Blast to na_te.dros performed 2015-02-11 09:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6822..6909 17..99 131 66.3 Plus

BS04645.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:48 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-PA 1..929 17..945 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:00 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-PA 1..929 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:21:51 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..949 10..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:46 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..949 10..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:46 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14412035..14412136 776..877 100 -> Plus
3L 14412256..14412323 878..945 100   Plus
3L 14410639..14410901 10..272 98 -> Plus
3L 14411081..14411272 273..464 100 -> Plus
3L 14411500..14411810 465..775 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:21:51 Download gff for BS04645.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14403739..14404001 10..272 98 -> Plus
arm_3L 14404181..14404372 273..464 100 -> Plus
arm_3L 14404600..14404910 465..775 100 -> Plus
arm_3L 14405135..14405236 776..877 100 -> Plus
arm_3L 14405356..14405423 878..945 100   Plus

BS04645.complete Sequence

1211 bp (1211 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634986

> BS04645.complete
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGC
ATTGCCAATCATGGATTTCGATGACGCATTCCTGCAGGGACTGCGTCCCG
AAATCAAGCACATGAACTTCCACCAGAAGCTGTACTTCAAGCGACGTGTG
TACGACCTGCTTGGCGAGATATTCCATTCCGAGCAGTCAGCCTCATCAAC
CCACCCAGCGCAGCCGCATCCCAGGGAGAATGTCAATGGAACGCTATCCA
CTACCTCGAGTCTCTCCTCGGCGAATCCACTACAGCACATGGGACTTATG
CTGCAGCTGCCAAAGCTGGTGTCCAAGGCATCCAAAGATTTGTAGAAGCT
TTCTAGACCAT

BS04645.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 909 CG3919-PB 1..909 287..1195 4545 100 Plus
CG3919-RC 957 CG3919-PC 1..591 287..877 2955 100 Plus
CG3919-RC 957 CG3919-PC 635..957 873..1195 1600 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-RB 1358 CG3919-RB 20..1199 16..1195 5900 100 Plus
CG3919-RC 1406 CG3919-RC 20..881 16..877 4310 100 Plus
CG3919-RC 1406 CG3919-RC 925..1247 873..1195 1600 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14412254..14412573 876..1195 1600 100 Plus
3L 28110227 3L 14411495..14411811 460..776 1570 99.7 Plus
3L 28110227 3L 14410645..14410901 16..272 1285 100 Plus
3L 28110227 3L 14411081..14411272 273..464 960 100 Plus
3L 28110227 3L 14412033..14412136 774..877 520 100 Plus
Blast to na_te.dros performed 2014-11-26 15:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6822..6909 17..99 131 66.3 Plus

BS04645.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:00 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 1..909 287..1195 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:14 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..1202 10..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:21 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 21..1199 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:00 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 14..1202 10..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:45 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
CG3919-RB 21..1199 17..1195 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:45 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14412035..14412136 776..877 100 -> Plus
3L 14410646..14410901 17..272 100 -> Plus
3L 14411081..14411272 273..464 100 -> Plus
3L 14411500..14411810 465..775 100 -> Plus
3L 14412256..14412573 878..1195 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:21 Download gff for BS04645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14403746..14404001 17..272 100 -> Plus
arm_3L 14404181..14404372 273..464 100 -> Plus
arm_3L 14404600..14404910 465..775 100 -> Plus
arm_3L 14405135..14405236 776..877 100 -> Plus
arm_3L 14405356..14405673 878..1195 100   Plus

BS04645.pep Sequence

Translation from 16 to 1194

> BS04645.pep
MCFKIKNNCYLKLQHSFTTASLVGSSTKSQCSKLLNTCNSSNSGVHANNC
RVHGSNERLEPELNKPKLVIKALTSINWSIFKPNSLFIYEMNTRRRSIAP
PPNVYAINAKICHLVKLHPCLYDRHDDNYLRKSTVKNAWKEISNEMRNSV
KSCKERWRNIRSSYARSIKLHHGANTYYLNSELKFLQKHITPGVPVPLRG
RRSRPKGQEEHDEGDPETPVEAILEMVHSPSFLNSEHAQSRHSTDPASAT
DVEATQFNNEPSSIMDFEDTVPAEMRTESDSSEKEAKTSTRCIEALPIMD
FDDAFLQGLRPEIKHMNFHQKLYFKRRVYDLLGEIFHSEQSASSTHPAQP
HPRENVNGTLSTTSSLSSANPLQHMGLMLQLPKLVSKASKDL*

BS04645.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3919-PB 302 CG3919-PB 1..302 91..392 1591 100 Plus
CG3919-PC 318 CG3919-PC 1..318 91..392 1564 95 Plus
CG4404-PA 308 CG4404-PA 15..98 108..186 178 38.1 Plus
CG3838-PB 435 CG3838-PB 58..140 108..186 165 41 Plus
CG3838-PA 435 CG3838-PA 58..140 108..186 165 41 Plus