Clone Sequence Records
BS04647.3prime Sequence
478 bp (431 high quality bases) assembled on 2005-12-02
> BS04647.3prime
ATGGTCTAGAAAGCTTTTAAAGATTATCAGATTGATGAGAGCCATTTTGT
TTTTTGTTTGCAATTCGGGACCCAAATTGAATAGCCCTTTTCTTTAAGAA
CACAACATCTCGCAAACCGATTTGATAGCCATACAGTCTCAGAAGTAATT
TATCGCCGACTCCTTCCGGGAAACCAAAGCAACATTTTTGATACACTTCT
AACGATCTTATAAATTTTACAAAGTTCTCTTCGATGAATGGGGATCTTGC
TGTTTTACCAGTATCTGCAATAATGCGGTCATCTCTGGCTAAATTACGGG
CCGAAATACGTTGCCAGTCCCTTTCAAGTTCGTTTTGCACAGCAAGTTGG
CGCTCCAGATCGTTTCCCAGACAACGGCTATAACTGTTGCGATAGCGGGT
ATACCCACCAAATAGTTCATCTGCCCCGCTTCCGATAGAGCGACTCTAGC
AGTAGAGTGAGTGCAATGCGAAGCAAAC
BS04647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PA | 1728 | CG17486-RA | 1308..1728 | 437..17 | 2105 | 100 | Minus |
| CG17486-PA | 1728 | CG17486-RA | 1266..1307 | 478..437 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 1269..1731 | 478..17 | 2290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4620298..4620760 | 478..17 | 2265 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:41:10 has no hits.
BS04647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:36 Download gff for
BS04647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-PA | 1266..1728 | 17..478 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:57:02 Download gff for
BS04647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 1269..1734 | 11..478 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:10 Download gff for
BS04647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 1269..1734 | 11..478 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:10 Download gff for
BS04647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4620298..4620763 | 11..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:57:02 Download gff for
BS04647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 507803..508268 | 11..478 | 99 | | Minus |
BS04647.5prime Sequence
512 bp (432 high quality bases) assembled on 2005-12-02
> BS04647.5prime
GAAGTTATCAGTCGACATGTGTGGAATATTTTGTTCAGTCGTGAACAATG
TTCCTTTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAA
AACCGCGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGG
AAAAATTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTAC
AAAAGCAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGAC
ATTTACAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGC
GGAAAGGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATAC
TTAAGCGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAA
CAAATCCTTTACTTTAGTCGCGACGCACTTGGAAGAAAATCACTATTAAT
TGAACGCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAG
ATAAAAAATATC
BS04647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PA | 1728 | CG17486-RA | 34..525 | 17..508 | 2435 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 37..528 | 17..508 | 2445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4619066..4619557 | 17..508 | 2445 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:00:31 has no hits.
BS04647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:26:37 Download gff for
BS04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-PA | 28..530 | 8..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:25:45 Download gff for
BS04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 31..533 | 8..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:31 Download gff for
BS04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 31..533 | 8..512 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:31 Download gff for
BS04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4619060..4619562 | 8..512 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:25:45 Download gff for
BS04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 506565..507067 | 8..512 | 98 | | Plus |
BS04647.complete Sequence
1727 bp assembled on 2008-08-14
GenBank Submission: FJ634987
> BS04647.complete
GAAGTTATCAGTCGACATGTGTGGAATATTTTGTTCAGTCGTGAACAATG
TTCCTTTAAACTCCTTTAATATTTCTAGCGCTCTGAAAGTAATTCTGAAA
AACCGCGGTCCTGATGTGCAAGACGAGGTGGTTATAGATTATTGTTTTGG
AAAAATTTTATTTGCTGGCTTCGTGTTATGGCAACAAGGGGAAAGTGTAC
AAAAGCAACCTGTGGTGGAGGACGATTTTATATTTCTTTTCAATGGAGAC
ATTTACAATACTTCAAAGCCTGAATATATGTCTGACACGACTTGGATAGC
GGAAAGGCTAGCTGAATGCCGTTGTAAAGAACAGAATATTTTGAAGATAC
TTAAGCGATTGGAGGGACCACATTGTTTAATAATTTATGACAAACGAGAA
CAAATCCTTTACTTTAGTCGCGACGCACTTGGAAGAAATTCACTATTAAT
TGAACGCATTTGTAATGGCTTCCAATTATTGAGCACATCACATTTTGAAG
ATAAAAAAATATCACTGGAATTGCCCCCATTGGGTCTTTTTCGAGTTAAA
CTAAATGATCTGAATTCGTGCGTATTGTATCCATGGCAGCCCCTCAATAA
TTATTCGACTCAGCTTTTACGCAACCTTGATCTTGCGATTGGGTGGAAAA
CTGCAGTAGAGAGTCCAATGTCGCCAGATTGGATGTTAAATTGCAACCCC
GCATTTAGTTATAACTTCTATGAATTTCAATACATCAAGAATAACGTGAA
CCTTTATAAAAACTTAATAGATCAGTCAGAAATTAAGTATACTCTATCTA
TTCTCCATACACTGCTATCCGATTCGATAAAAAATCGTGTTAGAAACATG
GCTCCATTTTGCAGACTCTGCATGCAAAAATTAAATATATCGCCTCCATG
CAGACACGCAAAATTGTGTATTCTATTTTCGGGTGGCCTTGACTGTACAA
TTTTGGCCTTGCTGGCCAACCAATTTGTACCAGTAAATGAACCCATCGAA
CTTATTAATGTTGCTTTCGAAAGCGTTAAGGGCCAAAATATATCGGAAAA
GCTTTTTGATGTACCAGATAGAAAAACGTCATTAGTATCTGTCAATGAAC
TAAAACAGCTTTGTCCGGAGAGGTGCTGGAATCTACTGAAAGTGAATGTA
ACTCGACTTGAATTGCAGCAGCACCTAACATCACGTATAAAGCATCTTAT
ATATCCGCTAGATACGGTATTAGATGAGAGTCTTGGATGTGCCTTCTGGT
TTGCTTCGCATTGCACTCACTCTACTGCTAGAGTCGCTCTTATCGGAAGC
GGGGCAGATGAACTATTTGGTGGGTATACCCGCTATCGCAACAGTTATAG
CCGTTGTCTGGGAAACGATCTGGAGCGCCAACTTGCTGTGCAAAACGAAC
TTGAAAGGGACTGGCAACGTATTTCGGCCCGTAATTTAGCCAGAGATGAC
CGCATTATTGCAGATACTGGTAAAACAGCAAGATCCCCATTCATCGAAGA
GAACTTTGTAAAATTTATAAGATCGTTAGAAGTGTATCAAAAATGTTGCT
TTGGTTTCCCGGAAGGAGTCGGCGATAAATTACTTCTGAGACTGTATGGC
TATCAAATCGGTTTGCGAGATGTTGTGTTCTTAAAGAAAAGGGCTATTCA
ATTTGGGTCCCGAATTGCAAACAAAAAACAAAATGGCTCTCATCAATCTG
ATAATCTTTAAAAGCTTTCTAGACCAT
BS04647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1695 | CG17486-PB | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-RB | 1804 | CG17486-RB | 37..1731 | 17..1711 | 8475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4619066..4620760 | 17..1711 | 8475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:36:49 has no hits.
BS04647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:08 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 32..1735 | 8..1717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:05 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 37..1729 | 17..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:09 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 38..1730 | 17..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:53 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17486-RB | 37..1729 | 17..1709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:53 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4619066..4620758 | 17..1709 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:05 Download gff for
BS04647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 506571..508263 | 17..1709 | 100 | | Plus |
BS04647.pep Sequence
Translation from 16 to 1710
> BS04647.pep
MCGIFCSVVNNVPLNSFNISSALKVILKNRGPDVQDEVVIDYCFGKILFA
GFVLWQQGESVQKQPVVEDDFIFLFNGDIYNTSKPEYMSDTTWIAERLAE
CRCKEQNILKILKRLEGPHCLIIYDKREQILYFSRDALGRNSLLIERICN
GFQLLSTSHFEDKKISLELPPLGLFRVKLNDLNSCVLYPWQPLNNYSTQL
LRNLDLAIGWKTAVESPMSPDWMLNCNPAFSYNFYEFQYIKNNVNLYKNL
IDQSEIKYTLSILHTLLSDSIKNRVRNMAPFCRLCMQKLNISPPCRHAKL
CILFSGGLDCTILALLANQFVPVNEPIELINVAFESVKGQNISEKLFDVP
DRKTSLVSVNELKQLCPERCWNLLKVNVTRLELQQHLTSRIKHLIYPLDT
VLDESLGCAFWFASHCTHSTARVALIGSGADELFGGYTRYRNSYSRCLGN
DLERQLAVQNELERDWQRISARNLARDDRIIADTGKTARSPFIEENFVKF
IRSLEVYQKCCFGFPEGVGDKLLLRLYGYQIGLRDVVFLKKRAIQFGSRI
ANKKQNGSHQSDNL*
BS04647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17486-PB | 564 | CG17486-PB | 1..564 | 1..564 | 2978 | 100 | Plus |
