Clone BS04650 Report

Search the DGRC for BS04650

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:50
Vector:pDNR-Dual
Associated Gene/Transcripttwin-RA
Protein status:BS04650.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04650.3prime Sequence

881 bp (788 high quality bases) assembled on 2005-12-02

> BS04650.3prime
ATGGTCTAGAAAGCTTCTACCGGCGATTGATCAGCCCGTTAGGAGGCGCC
TGTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTG
ATCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCA
GCCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTC
TTCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTT
GGTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGT
GCGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTG
TAGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCC
GAGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACA
GCAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTG
TGGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGT
CTGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCG
TGCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCC
CATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTT
AGGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTG
CCAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGAC
GCCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGA
CATAGTCTTAGCACGCGACTTCGGTGAGAAG

BS04650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PA 1659 twin-RA 795..1659 881..17 4325 100 Minus
CG31137-PB 1638 twin-RB 774..1638 881..17 4325 100 Minus
CG31137-PE 1659 twin-RE 795..1659 881..17 4325 100 Minus
CG31137-PC 1704 twin-RC 840..1704 881..17 4325 100 Minus
CG31137-PD 1077 twin-RD 213..1077 881..17 4325 100 Minus
CG31137-PF 1659 twin-RF 795..1659 881..17 4325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 981..1845 881..17 4325 100 Minus
twin-RD 2950 CG31137-RD 1241..2105 881..17 4325 100 Minus
twin-RC 2586 CG31137-RC 877..1741 881..17 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198436..24199213 17..794 3890 100 Plus
3R 32079331 3R 24199273..24199361 793..881 445 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:34:30 has no hits.

BS04650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:55 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-PF 795..1659 17..881 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:07 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PF 795..1659 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:56:34 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 877..1741 17..881 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:04 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 877..1741 17..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:04 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24198436..24199213 17..794 100 <- Plus
3R 24199275..24199361 795..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:56:34 Download gff for BS04650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024158..20024935 17..794 100 <- Plus
arm_3R 20024997..20025083 795..881 100   Plus

BS04650.5prime Sequence

853 bp (801 high quality bases) assembled on 2005-11-29

> BS04650.5prime
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAG

BS04650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PA 1659 twin-RA 1..837 17..853 4185 100 Plus
CG31137-PE 1659 twin-RE 1..837 17..853 4185 100 Plus
CG31137-PC 1704 twin-RC 46..882 17..853 4185 100 Plus
CG31137-PF 1659 twin-RF 1..837 17..853 4185 100 Plus
CG31137-PB 1638 twin-RB 1..816 38..853 4080 100 Plus
CG31137-PD 1077 twin-RD 1..255 599..853 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 187..1023 17..853 4185 100 Plus
twin-RC 2586 CG31137-RC 83..919 17..853 4185 100 Plus
twin-RE 3548 CG31137-RE 347..1183 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24199319..24199587 853..585 1345 100 Minus
3R 32079331 3R 24219964..24220157 340..147 955 99.5 Minus
3R 32079331 3R 24219600..24219776 515..339 885 100 Minus
3R 32079331 3R 24220214..24220345 153..22 660 100 Minus
3R 32079331 3R 24199882..24199951 585..516 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:15:13 has no hits.

BS04650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:56 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-PF 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:08 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PF 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:55 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RE 341..1183 11..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:15 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RE 341..1183 11..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:15 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24199319..24199587 585..853 100 <- Minus
3R 24199883..24199951 516..584 100 <- Minus
3R 24219600..24219775 340..515 100 <- Minus
3R 24219965..24220151 153..339 100 <- Minus
3R 24220215..24220352 15..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:55 Download gff for BS04650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20025041..20025309 585..853 100 <- Minus
arm_3R 20025605..20025673 516..584 100 <- Minus
arm_3R 20045322..20045497 340..515 100 <- Minus
arm_3R 20045687..20045873 153..339 100 <- Minus
arm_3R 20045937..20046074 15..152 97   Minus

BS04650.complete Sequence

1691 bp (1691 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634988

> BS04650.complete
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAGAGGAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTT
TACGCTGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCA
ATGCCGAGGGCTCCGACAACATGCTGAACCGCGTAATGCCTAAGGATAAC
ATCGGTCTGGCCGCACTGCTCAAGGTGAAGGAGAACGCATGGGAGCCGAT
GTCCGAGGTGACGCAGATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACA
TACACTGGGACCCTGAGTTCTGCGACGTCAAGCTCATCCAGACGATGATG
CTTAGCAATGAGTTGAAGACGATCATCGACGAGGCGAGCCACAGTTTCCG
ACCTGGTCACAAGAACGACTCCAATGCTGTCCAGCTGCTGCTGTGCGGTG
ACTTCAACTCGCTACCCGATTCAGGCGTTGTGGAGTTTCTCGGCAAGGGC
CGCGTTTCCATGGATCATTTGGACTTCAAGGACATGGGCTACAAGTCCTG
CCTGCAGCGGCTGCTCTCGAACGACACCAACGAGTTTACGCACTCGTTCA
AGCTAGCCTCCGCCTACAACGAGGACATAATGCCGCACACCAACTATACG
TTCGATTTTAAGGGCATCATCGACTACATTTTCTACACGAAGACGGGCAT
GGTGCCGCTGGGCCTGCTGGGTCCTGTCTCCAATGATTGGCTGCGCGAGA
ATAAGGTTGTTGGATGCCCACATCCGCATATACCCTCTGATCACTTCCCA
CTGCTGGTCGAGCTAGAGCTGATGCATACGGCTAGCCAACAGGCGCCTCC
TAACGGGCTGATCAATCGCCGGTAGAAGCTTTCTAGACCAT

BS04650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 1659 CG31137-PF 1..1659 17..1675 8295 100 Plus
twin-RC 1704 CG31137-PC 46..1704 17..1675 8295 100 Plus
twin-RE 1659 CG31137-PE 1..1659 17..1675 8295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 187..1845 17..1675 8295 100 Plus
twin-RC 2586 CG31137-RC 83..1741 17..1675 8295 100 Plus
twin-RE 3548 CG31137-RE 347..2005 17..1675 8295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198436..24199213 1675..898 3890 100 Minus
3R 32079331 3R 24199273..24199587 899..585 1575 100 Minus
3R 32079331 3R 24219964..24220157 340..147 955 99.5 Minus
3R 32079331 3R 24219600..24219776 515..339 885 100 Minus
3R 32079331 3R 24220214..24220345 153..22 660 100 Minus
3R 32079331 3R 24199882..24199951 585..516 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:15:14 has no hits.

BS04650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:48 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 40..1704 11..1675 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:53 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 83..1741 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:40 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 347..2005 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:49 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 77..1741 11..1675 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:01 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RE 347..2005 17..1675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:01 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24198436..24199213 898..1675 100 <- Minus
3R 24199275..24199587 585..897 100 <- Minus
3R 24199883..24199951 516..584 100 <- Minus
3R 24219600..24219775 340..515 100 <- Minus
3R 24219965..24220151 153..339 100 <- Minus
3R 24220215..24220348 17..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:40 Download gff for BS04650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024158..20024935 898..1675 100 <- Minus
arm_3R 20024997..20025309 585..897 100 <- Minus
arm_3R 20025605..20025673 516..584 100 <- Minus
arm_3R 20045322..20045497 340..515 100 <- Minus
arm_3R 20045687..20045873 153..339 100 <- Minus
arm_3R 20045937..20046070 17..152 97   Minus

BS04650.pep Sequence

Translation from 16 to 1674

> BS04650.pep
MKGNHYKMSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRN
ISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAE
LGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNE
PNGTQKLLTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVL
CDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFY
HFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKE
SLIEFNQLAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQ
ISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKN
DSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLL
SNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGL
LGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLIN
RR*

BS04650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
twin-PF 552 CG31137-PF 1..552 1..552 2939 100 Plus
twin-PC 567 CG31137-PC 16..567 1..552 2939 100 Plus
twin-PE 552 CG31137-PE 1..552 1..552 2939 100 Plus
twin-PA 552 CG31137-PA 1..552 1..552 2939 100 Plus
twin-PB 545 CG31137-PB 1..545 8..552 2897 100 Plus