Clone Sequence Records
BS04650.3prime Sequence
881 bp (788 high quality bases) assembled on 2005-12-02
> BS04650.3prime
ATGGTCTAGAAAGCTTCTACCGGCGATTGATCAGCCCGTTAGGAGGCGCC
TGTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTG
ATCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCA
GCCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTC
TTCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTT
GGTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGT
GCGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTG
TAGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCC
GAGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACA
GCAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTG
TGGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGT
CTGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCG
TGCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCC
CATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTT
AGGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTG
CCAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGAC
GCCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGA
CATAGTCTTAGCACGCGACTTCGGTGAGAAG
BS04650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PA | 1659 | twin-RA | 795..1659 | 881..17 | 4325 | 100 | Minus |
CG31137-PB | 1638 | twin-RB | 774..1638 | 881..17 | 4325 | 100 | Minus |
CG31137-PE | 1659 | twin-RE | 795..1659 | 881..17 | 4325 | 100 | Minus |
CG31137-PC | 1704 | twin-RC | 840..1704 | 881..17 | 4325 | 100 | Minus |
CG31137-PD | 1077 | twin-RD | 213..1077 | 881..17 | 4325 | 100 | Minus |
CG31137-PF | 1659 | twin-RF | 795..1659 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 981..1845 | 881..17 | 4325 | 100 | Minus |
twin-RD | 2950 | CG31137-RD | 1241..2105 | 881..17 | 4325 | 100 | Minus |
twin-RC | 2586 | CG31137-RC | 877..1741 | 881..17 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198436..24199213 | 17..794 | 3890 | 100 | Plus |
3R | 32079331 | 3R | 24199273..24199361 | 793..881 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:34:30 has no hits.
BS04650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:55 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-PF | 795..1659 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:07 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PF | 795..1659 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:56:34 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 877..1741 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:04 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 877..1741 | 17..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:04 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24198436..24199213 | 17..794 | 100 | <- | Plus |
3R | 24199275..24199361 | 795..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:56:34 Download gff for
BS04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024158..20024935 | 17..794 | 100 | <- | Plus |
arm_3R | 20024997..20025083 | 795..881 | 100 | | Plus |
BS04650.5prime Sequence
853 bp (801 high quality bases) assembled on 2005-11-29
> BS04650.5prime
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAG
BS04650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PA | 1659 | twin-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
CG31137-PE | 1659 | twin-RE | 1..837 | 17..853 | 4185 | 100 | Plus |
CG31137-PC | 1704 | twin-RC | 46..882 | 17..853 | 4185 | 100 | Plus |
CG31137-PF | 1659 | twin-RF | 1..837 | 17..853 | 4185 | 100 | Plus |
CG31137-PB | 1638 | twin-RB | 1..816 | 38..853 | 4080 | 100 | Plus |
CG31137-PD | 1077 | twin-RD | 1..255 | 599..853 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 187..1023 | 17..853 | 4185 | 100 | Plus |
twin-RC | 2586 | CG31137-RC | 83..919 | 17..853 | 4185 | 100 | Plus |
twin-RE | 3548 | CG31137-RE | 347..1183 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24199319..24199587 | 853..585 | 1345 | 100 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 340..147 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 515..339 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220345 | 153..22 | 660 | 100 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 585..516 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:15:13 has no hits.
BS04650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:56 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-PF | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:08 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PF | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:55 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 341..1183 | 11..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:15 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 341..1183 | 11..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:15 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24199319..24199587 | 585..853 | 100 | <- | Minus |
3R | 24199883..24199951 | 516..584 | 100 | <- | Minus |
3R | 24219600..24219775 | 340..515 | 100 | <- | Minus |
3R | 24219965..24220151 | 153..339 | 100 | <- | Minus |
3R | 24220215..24220352 | 15..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:55 Download gff for
BS04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20025041..20025309 | 585..853 | 100 | <- | Minus |
arm_3R | 20025605..20025673 | 516..584 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 340..515 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 153..339 | 100 | <- | Minus |
arm_3R | 20045937..20046074 | 15..152 | 97 | | Minus |
BS04650.complete Sequence
1691 bp (1691 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634988
> BS04650.complete
GAAGTTATCAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACA
AAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAG
GAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTAC
TGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAA
CCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTT
GGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAG
AAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGC
TGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTC
CACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCAT
GAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGC
TGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTG
CCACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCAT
GTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGAT
ACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATC
GACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGA
AACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGT
ACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTG
GAGAGGAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTT
TACGCTGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCA
ATGCCGAGGGCTCCGACAACATGCTGAACCGCGTAATGCCTAAGGATAAC
ATCGGTCTGGCCGCACTGCTCAAGGTGAAGGAGAACGCATGGGAGCCGAT
GTCCGAGGTGACGCAGATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACA
TACACTGGGACCCTGAGTTCTGCGACGTCAAGCTCATCCAGACGATGATG
CTTAGCAATGAGTTGAAGACGATCATCGACGAGGCGAGCCACAGTTTCCG
ACCTGGTCACAAGAACGACTCCAATGCTGTCCAGCTGCTGCTGTGCGGTG
ACTTCAACTCGCTACCCGATTCAGGCGTTGTGGAGTTTCTCGGCAAGGGC
CGCGTTTCCATGGATCATTTGGACTTCAAGGACATGGGCTACAAGTCCTG
CCTGCAGCGGCTGCTCTCGAACGACACCAACGAGTTTACGCACTCGTTCA
AGCTAGCCTCCGCCTACAACGAGGACATAATGCCGCACACCAACTATACG
TTCGATTTTAAGGGCATCATCGACTACATTTTCTACACGAAGACGGGCAT
GGTGCCGCTGGGCCTGCTGGGTCCTGTCTCCAATGATTGGCTGCGCGAGA
ATAAGGTTGTTGGATGCCCACATCCGCATATACCCTCTGATCACTTCCCA
CTGCTGGTCGAGCTAGAGCTGATGCATACGGCTAGCCAACAGGCGCCTCC
TAACGGGCTGATCAATCGCCGGTAGAAGCTTTCTAGACCAT
BS04650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 1659 | CG31137-PF | 1..1659 | 17..1675 | 8295 | 100 | Plus |
twin-RC | 1704 | CG31137-PC | 46..1704 | 17..1675 | 8295 | 100 | Plus |
twin-RE | 1659 | CG31137-PE | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 187..1845 | 17..1675 | 8295 | 100 | Plus |
twin-RC | 2586 | CG31137-RC | 83..1741 | 17..1675 | 8295 | 100 | Plus |
twin-RE | 3548 | CG31137-RE | 347..2005 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198436..24199213 | 1675..898 | 3890 | 100 | Minus |
3R | 32079331 | 3R | 24199273..24199587 | 899..585 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 340..147 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 515..339 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220345 | 153..22 | 660 | 100 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 585..516 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:15:14 has no hits.
BS04650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:48 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 40..1704 | 11..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:53 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 83..1741 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:40 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 347..2005 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:49 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 77..1741 | 11..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:07:01 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RE | 347..2005 | 17..1675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:07:01 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24198436..24199213 | 898..1675 | 100 | <- | Minus |
3R | 24199275..24199587 | 585..897 | 100 | <- | Minus |
3R | 24199883..24199951 | 516..584 | 100 | <- | Minus |
3R | 24219600..24219775 | 340..515 | 100 | <- | Minus |
3R | 24219965..24220151 | 153..339 | 100 | <- | Minus |
3R | 24220215..24220348 | 17..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:40 Download gff for
BS04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024158..20024935 | 898..1675 | 100 | <- | Minus |
arm_3R | 20024997..20025309 | 585..897 | 100 | <- | Minus |
arm_3R | 20025605..20025673 | 516..584 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 340..515 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 153..339 | 100 | <- | Minus |
arm_3R | 20045937..20046070 | 17..152 | 97 | | Minus |
BS04650.pep Sequence
Translation from 16 to 1674
> BS04650.pep
MKGNHYKMSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRN
ISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAE
LGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNE
PNGTQKLLTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVL
CDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFY
HFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKE
SLIEFNQLAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQ
ISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKN
DSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLL
SNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGL
LGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLIN
RR*
BS04650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-PF | 552 | CG31137-PF | 1..552 | 1..552 | 2939 | 100 | Plus |
twin-PC | 567 | CG31137-PC | 16..567 | 1..552 | 2939 | 100 | Plus |
twin-PE | 552 | CG31137-PE | 1..552 | 1..552 | 2939 | 100 | Plus |
twin-PA | 552 | CG31137-PA | 1..552 | 1..552 | 2939 | 100 | Plus |
twin-PB | 545 | CG31137-PB | 1..545 | 8..552 | 2897 | 100 | Plus |