Clone BS04652 Report

Search the DGRC for BS04652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:52
Vector:pDNR-Dual
Associated Gene/Transcriptmael-RA
Protein status:BS04652.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04652.3prime Sequence

954 bp (832 high quality bases) assembled on 2005-12-02

> BS04652.3prime
ATGGTCTAGAAAGCTTTTATTTTTTAAGTTTCCCATCAGCGCCGTTTACG
GAGAAGTCGTTGTCTGAAACCTTCCGAATTAAACGCGAGTGCGTCGGTAA
GTTCCTAGCGTTCCATTCCCGCTGAGCACTAGCGGCGATACCGTGATGCT
TACTAGAATTACGCATGCCGAGGCTGGGGAATTCAGAAACTTCGTTTAAA
TTTGCGGCAAAGGAAGTGTGGTCTATGGGCTTGTAGGAGCTTGATGCGAC
GGAAAGTCGACTGCTAGAAAGCGAACAAGCTTCGGGTTGGCTTTCCTTCT
TGACCCCAGATCCGGGAAGCGAATAAAAAGAGTCGAAGGAGGACTCGTGG
TCGAGTGAGGAGGCGTACGAGCTTATGATAAGGTAGTTGGGTTTTGTTTG
GGCAGGTATGTGCTTTCCGGGTTGGACGGTTATGGCCAGGTCTCCGCACA
TAAAATCAGTGAAGGTATACGCCCATCTAGTCACCATACTCTGGGTACAG
TACTTGGTTCGATCATTATCCTCGTGGTACTGACACGCAATCCCTGCGGT
AAACTCGAAAAAGTCTTTCTTAAAAAAAGCATCCGTCGCGAATTTGTTGA
TTTTCTCGTCATTCAAATCAGCGACATTCATGACCTCCTTCTTCAATATG
AATAGCAAGTACTGGATATCAAACACCTGGATTTTTTCGCCCCCGTCCCT
GAAGTCATCATCGCACTCCAAATAGCGGAAGCATGACTTCACCATGGTAA
TATTTTCGGCGGGTGTAAAGACTACTAGGGTCTTGCCTTTTCCCTGGCAT
TTGGATAAGTAGTCAACAATGTTGCGGTACAGCTTGGTCATGTTCTTCTC
CCCCAGCGCGTTGGGCGGCAGCGGCAGGTCGTGAGTGGTTGAAGAGTGAA
GCAGGGCATCGCTACCTTGCCCAAAAATGATCTGACCGGGGTCAATCATG
GTGC

BS04652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11254-PA 1380 mael-RA 443..1380 954..17 4690 100 Minus
CG11254-PC 1389 mael-RC 452..1389 954..17 4690 100 Minus
CG11254-PB 1380 mael-RB 443..1380 954..17 4690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
mael-RD 2143 CG11254-RD 1089..2026 954..17 4690 100 Minus
mael-RB 1830 CG11254-RB 776..1713 954..17 4690 100 Minus
mael-RC 1839 CG11254-RC 785..1722 954..17 4690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22725602..22726117 532..17 2580 100 Minus
3L 28110227 3L 22725118..22725542 954..530 2125 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:07:49 has no hits.

BS04652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:59 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
mael-PA 443..1380 17..954 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:12 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11254-PB 443..1380 17..954 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:14 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
mael-RA 705..1644 13..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:34 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
mael-RC 785..1724 13..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:34 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22725118..22725542 530..954 100 -> Minus
3L 22725605..22726119 13..529 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:14 Download gff for BS04652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22718218..22718642 530..954 100 -> Minus
arm_3L 22718705..22719219 13..529 99   Minus

BS04652.5prime Sequence

979 bp (842 high quality bases) assembled on 2005-12-02

> BS04652.5prime
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGA
TCGAACCAAGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCT
TCACTGATTTTATGTGCGGGAGACCTGGG

BS04652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11254-PA 1380 mael-RA 1..953 17..969 4765 100 Plus
CG11254-PB 1380 mael-RB 1..953 17..969 4765 100 Plus
CG11254-PC 1389 mael-RC 128..962 135..969 4175 100 Plus
CG11254-PC 1389 mael-RC 1..120 17..136 600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
mael-RD 2143 CG11254-RD 647..1607 17..978 4785 99.9 Plus
mael-RB 1830 CG11254-RB 334..1294 17..978 4785 99.9 Plus
mael-RA 1759 CG11254-RA 263..1223 17..978 4785 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22724985..22725542 326..883 2790 100 Plus
3L 28110227 3L 22724738..22724929 135..326 960 100 Plus
3L 28110227 3L 22724566..22724685 17..136 600 100 Plus
3L 28110227 3L 22725602..22725690 881..969 445 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:13:50 has no hits.

BS04652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:00 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
mael-PA 1..961 17..979 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:14 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11254-PB 1..961 17..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:46:58 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
mael-RA 257..1223 11..979 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:44 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
mael-RA 257..1223 11..979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:44 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22724560..22724685 11..136 97 -> Plus
3L 22724740..22724929 137..326 100 -> Plus
3L 22724986..22725542 327..883 100 -> Plus
3L 22725605..22725698 884..979 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:46:58 Download gff for BS04652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22717660..22717785 11..136 97 -> Plus
arm_3L 22717840..22718029 137..326 100 -> Plus
arm_3L 22718086..22718642 327..883 100 -> Plus
arm_3L 22718705..22718798 884..979 97   Plus

BS04652.complete Sequence

1412 bp (1412 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634989

> BS04652.complete
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGA
TCGAACCAAGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCT
TCACTGATTTTATGTGCGGAGACCTGGCCATAACCGTCCAACCCGGAAAG
CACATACCTGCCCAAACAAAACCCAACTACCTTATCATAAGCTCGTACGC
CTCCTCACTCGACCACGAGTCCTCCTTCGACTCTTTTTATTCGCTTCCCG
GATCTGGGGTCAAGAAGGAAAGCCAACCCGAAGCTTGTTCGCTTTCTAGC
AGTCGACTTTCCGTCGCATCAAGCTCCTACAAGCCCATAGACCACACTTC
CTTTGCCGCAAATTTAAACGAAGTTTCTGAATTCCCCAGCCTCGGCATGC
GTAATTCTAGTAAGCATCACGGTATCGCCGCTAGTGCTCAGCGGGAATGG
AACGCTAGGAACTTACCGACGCACTCGCGTTTAATTCGGAAGGTTTCAGA
CAACGACTTCTCCGTAAACGGCGCTGATGGGAAACTTAAAAAATAAAAGC
TTTCTAGACCAT

BS04652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
mael-RD 1380 CG11254-PD 1..1380 17..1396 6900 100 Plus
mael-RB 1380 CG11254-PB 1..1380 17..1396 6900 100 Plus
mael-RA 1380 CG11254-PA 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
mael-RD 2143 CG11254-RD 647..2026 17..1396 6900 100 Plus
mael-RB 1830 CG11254-RB 334..1713 17..1396 6900 100 Plus
mael-RA 1759 CG11254-RA 263..1642 17..1396 6900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22724985..22725542 326..883 2790 100 Plus
3L 28110227 3L 22725602..22726117 881..1396 2580 100 Plus
3L 28110227 3L 22724738..22724929 135..326 960 100 Plus
3L 28110227 3L 22724566..22724685 17..136 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:26:52 has no hits.

BS04652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:50 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
mael-RB 1..1380 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:02 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
mael-RB 327..1714 11..1400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:13 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
mael-RA 263..1633 17..1387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:50 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
mael-RB 327..1714 11..1400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:57 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
mael-RA 263..1633 17..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:57 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22724740..22724929 137..326 100 -> Plus
3L 22725605..22726108 884..1387 100   Plus
3L 22724566..22724685 17..136 100 -> Plus
3L 22724986..22725542 327..883 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:13 Download gff for BS04652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22717666..22717785 17..136 100 -> Plus
arm_3L 22717840..22718029 137..326 100 -> Plus
arm_3L 22718086..22718642 327..883 100 -> Plus
arm_3L 22718705..22719208 884..1387 100   Plus

BS04652.pep Sequence

Translation from 16 to 1395

> BS04652.pep
MAPKKHSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPY
NSGGKDANVAQRAKRESSNGHGQVDKAQREATESLMDMKRTIERLVLNAK
MSHDLENAKFVFVAFNYFTKALTTDVYVPAEFAACEYSLKEGIRSIYSTM
IDPGQIIFGQGSDALLHSSTTHDLPLPPNALGEKNMTKLYRNIVDYLSKC
QGKGKTLVVFTPAENITMVKSCFRYLECDDDFRDGGEKIQVFDIQYLLFI
LKKEVMNVADLNDEKINKFATDAFFKKDFFEFTAGIACQYHEDNDRTKYC
TQSMVTRWAYTFTDFMCGDLAITVQPGKHIPAQTKPNYLIISSYASSLDH
ESSFDSFYSLPGSGVKKESQPEACSLSSSRLSVASSSYKPIDHTSFAANL
NEVSEFPSLGMRNSSKHHGIAASAQREWNARNLPTHSRLIRKVSDNDFSV
NGADGKLKK*

BS04652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
mael-PD 459 CG11254-PD 1..459 1..459 2409 100 Plus
mael-PB 459 CG11254-PB 1..459 1..459 2409 100 Plus
mael-PA 459 CG11254-PA 1..459 1..459 2409 100 Plus
mael-PC 462 CG11254-PC 1..462 1..459 2395 99.4 Plus