Clone Sequence Records
BS04652.3prime Sequence
954 bp (832 high quality bases) assembled on 2005-12-02
> BS04652.3prime
ATGGTCTAGAAAGCTTTTATTTTTTAAGTTTCCCATCAGCGCCGTTTACG
GAGAAGTCGTTGTCTGAAACCTTCCGAATTAAACGCGAGTGCGTCGGTAA
GTTCCTAGCGTTCCATTCCCGCTGAGCACTAGCGGCGATACCGTGATGCT
TACTAGAATTACGCATGCCGAGGCTGGGGAATTCAGAAACTTCGTTTAAA
TTTGCGGCAAAGGAAGTGTGGTCTATGGGCTTGTAGGAGCTTGATGCGAC
GGAAAGTCGACTGCTAGAAAGCGAACAAGCTTCGGGTTGGCTTTCCTTCT
TGACCCCAGATCCGGGAAGCGAATAAAAAGAGTCGAAGGAGGACTCGTGG
TCGAGTGAGGAGGCGTACGAGCTTATGATAAGGTAGTTGGGTTTTGTTTG
GGCAGGTATGTGCTTTCCGGGTTGGACGGTTATGGCCAGGTCTCCGCACA
TAAAATCAGTGAAGGTATACGCCCATCTAGTCACCATACTCTGGGTACAG
TACTTGGTTCGATCATTATCCTCGTGGTACTGACACGCAATCCCTGCGGT
AAACTCGAAAAAGTCTTTCTTAAAAAAAGCATCCGTCGCGAATTTGTTGA
TTTTCTCGTCATTCAAATCAGCGACATTCATGACCTCCTTCTTCAATATG
AATAGCAAGTACTGGATATCAAACACCTGGATTTTTTCGCCCCCGTCCCT
GAAGTCATCATCGCACTCCAAATAGCGGAAGCATGACTTCACCATGGTAA
TATTTTCGGCGGGTGTAAAGACTACTAGGGTCTTGCCTTTTCCCTGGCAT
TTGGATAAGTAGTCAACAATGTTGCGGTACAGCTTGGTCATGTTCTTCTC
CCCCAGCGCGTTGGGCGGCAGCGGCAGGTCGTGAGTGGTTGAAGAGTGAA
GCAGGGCATCGCTACCTTGCCCAAAAATGATCTGACCGGGGTCAATCATG
GTGC
BS04652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11254-PA | 1380 | mael-RA | 443..1380 | 954..17 | 4690 | 100 | Minus |
CG11254-PC | 1389 | mael-RC | 452..1389 | 954..17 | 4690 | 100 | Minus |
CG11254-PB | 1380 | mael-RB | 443..1380 | 954..17 | 4690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 1089..2026 | 954..17 | 4690 | 100 | Minus |
mael-RB | 1830 | CG11254-RB | 776..1713 | 954..17 | 4690 | 100 | Minus |
mael-RC | 1839 | CG11254-RC | 785..1722 | 954..17 | 4690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22725602..22726117 | 532..17 | 2580 | 100 | Minus |
3L | 28110227 | 3L | 22725118..22725542 | 954..530 | 2125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:49 has no hits.
BS04652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:53:59 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-PA | 443..1380 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:12 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11254-PB | 443..1380 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:14 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 705..1644 | 13..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:34 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RC | 785..1724 | 13..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:34 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22725118..22725542 | 530..954 | 100 | -> | Minus |
3L | 22725605..22726119 | 13..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:14 Download gff for
BS04652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22718218..22718642 | 530..954 | 100 | -> | Minus |
arm_3L | 22718705..22719219 | 13..529 | 99 | | Minus |
BS04652.5prime Sequence
979 bp (842 high quality bases) assembled on 2005-12-02
> BS04652.5prime
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGA
TCGAACCAAGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCT
TCACTGATTTTATGTGCGGGAGACCTGGG
BS04652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11254-PA | 1380 | mael-RA | 1..953 | 17..969 | 4765 | 100 | Plus |
CG11254-PB | 1380 | mael-RB | 1..953 | 17..969 | 4765 | 100 | Plus |
CG11254-PC | 1389 | mael-RC | 128..962 | 135..969 | 4175 | 100 | Plus |
CG11254-PC | 1389 | mael-RC | 1..120 | 17..136 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 647..1607 | 17..978 | 4785 | 99.9 | Plus |
mael-RB | 1830 | CG11254-RB | 334..1294 | 17..978 | 4785 | 99.9 | Plus |
mael-RA | 1759 | CG11254-RA | 263..1223 | 17..978 | 4785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22724985..22725542 | 326..883 | 2790 | 100 | Plus |
3L | 28110227 | 3L | 22724738..22724929 | 135..326 | 960 | 100 | Plus |
3L | 28110227 | 3L | 22724566..22724685 | 17..136 | 600 | 100 | Plus |
3L | 28110227 | 3L | 22725602..22725690 | 881..969 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:13:50 has no hits.
BS04652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:00 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-PA | 1..961 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:14 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11254-PB | 1..961 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:46:58 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 257..1223 | 11..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:53:44 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 257..1223 | 11..979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:53:44 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22724560..22724685 | 11..136 | 97 | -> | Plus |
3L | 22724740..22724929 | 137..326 | 100 | -> | Plus |
3L | 22724986..22725542 | 327..883 | 100 | -> | Plus |
3L | 22725605..22725698 | 884..979 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:46:58 Download gff for
BS04652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22717660..22717785 | 11..136 | 97 | -> | Plus |
arm_3L | 22717840..22718029 | 137..326 | 100 | -> | Plus |
arm_3L | 22718086..22718642 | 327..883 | 100 | -> | Plus |
arm_3L | 22718705..22718798 | 884..979 | 97 | | Plus |
BS04652.complete Sequence
1412 bp (1412 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634989
> BS04652.complete
GAAGTTATCAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGT
TCGTAAACGAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTG
GCGCAGGCTGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCA
GCAGCGTGGTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAAC
GCGCCAAAAGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAA
AGGGAGGCCACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCT
CGTGCTAAACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCT
TCGTTGCCTTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTG
CCCGCCGAGTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATC
CATCTACAGCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTA
GCGATGCCCTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCC
AACGCGCTGGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGA
CTACTTATCCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACAC
CCGCCGAAAATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGC
GATGATGACTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCA
GTACTTGCTATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGA
ATGACGAGAAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGAC
TTTTTCGAGTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGA
TCGAACCAAGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCT
TCACTGATTTTATGTGCGGAGACCTGGCCATAACCGTCCAACCCGGAAAG
CACATACCTGCCCAAACAAAACCCAACTACCTTATCATAAGCTCGTACGC
CTCCTCACTCGACCACGAGTCCTCCTTCGACTCTTTTTATTCGCTTCCCG
GATCTGGGGTCAAGAAGGAAAGCCAACCCGAAGCTTGTTCGCTTTCTAGC
AGTCGACTTTCCGTCGCATCAAGCTCCTACAAGCCCATAGACCACACTTC
CTTTGCCGCAAATTTAAACGAAGTTTCTGAATTCCCCAGCCTCGGCATGC
GTAATTCTAGTAAGCATCACGGTATCGCCGCTAGTGCTCAGCGGGAATGG
AACGCTAGGAACTTACCGACGCACTCGCGTTTAATTCGGAAGGTTTCAGA
CAACGACTTCTCCGTAAACGGCGCTGATGGGAAACTTAAAAAATAAAAGC
TTTCTAGACCAT
BS04652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 1380 | CG11254-PD | 1..1380 | 17..1396 | 6900 | 100 | Plus |
mael-RB | 1380 | CG11254-PB | 1..1380 | 17..1396 | 6900 | 100 | Plus |
mael-RA | 1380 | CG11254-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-RD | 2143 | CG11254-RD | 647..2026 | 17..1396 | 6900 | 100 | Plus |
mael-RB | 1830 | CG11254-RB | 334..1713 | 17..1396 | 6900 | 100 | Plus |
mael-RA | 1759 | CG11254-RA | 263..1642 | 17..1396 | 6900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22724985..22725542 | 326..883 | 2790 | 100 | Plus |
3L | 28110227 | 3L | 22725602..22726117 | 881..1396 | 2580 | 100 | Plus |
3L | 28110227 | 3L | 22724738..22724929 | 135..326 | 960 | 100 | Plus |
3L | 28110227 | 3L | 22724566..22724685 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:26:52 has no hits.
BS04652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:50 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 1..1380 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:02 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 327..1714 | 11..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:13 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:50 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RB | 327..1714 | 11..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:57 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mael-RA | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:57 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22724740..22724929 | 137..326 | 100 | -> | Plus |
3L | 22725605..22726108 | 884..1387 | 100 | | Plus |
3L | 22724566..22724685 | 17..136 | 100 | -> | Plus |
3L | 22724986..22725542 | 327..883 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:13 Download gff for
BS04652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22717666..22717785 | 17..136 | 100 | -> | Plus |
arm_3L | 22717840..22718029 | 137..326 | 100 | -> | Plus |
arm_3L | 22718086..22718642 | 327..883 | 100 | -> | Plus |
arm_3L | 22718705..22719208 | 884..1387 | 100 | | Plus |
BS04652.pep Sequence
Translation from 16 to 1395
> BS04652.pep
MAPKKHSGFMMFVNEWRNRNAEGRRMTLAQAVSHCGTIWEKMNTQQRGPY
NSGGKDANVAQRAKRESSNGHGQVDKAQREATESLMDMKRTIERLVLNAK
MSHDLENAKFVFVAFNYFTKALTTDVYVPAEFAACEYSLKEGIRSIYSTM
IDPGQIIFGQGSDALLHSSTTHDLPLPPNALGEKNMTKLYRNIVDYLSKC
QGKGKTLVVFTPAENITMVKSCFRYLECDDDFRDGGEKIQVFDIQYLLFI
LKKEVMNVADLNDEKINKFATDAFFKKDFFEFTAGIACQYHEDNDRTKYC
TQSMVTRWAYTFTDFMCGDLAITVQPGKHIPAQTKPNYLIISSYASSLDH
ESSFDSFYSLPGSGVKKESQPEACSLSSSRLSVASSSYKPIDHTSFAANL
NEVSEFPSLGMRNSSKHHGIAASAQREWNARNLPTHSRLIRKVSDNDFSV
NGADGKLKK*
BS04652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mael-PD | 459 | CG11254-PD | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PB | 459 | CG11254-PB | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PA | 459 | CG11254-PA | 1..459 | 1..459 | 2409 | 100 | Plus |
mael-PC | 462 | CG11254-PC | 1..462 | 1..459 | 2395 | 99.4 | Plus |