Clone Sequence Records
BS04654.3prime Sequence
968 bp (882 high quality bases) assembled on 2005-12-02
> BS04654.3prime
ATGGTCTAGAAAGCTTTCAGCCCGGCGTCTGCAGCTTGCTGCTGGATCGC
GAGAATAGGGCCTTCTTCAGGATGTTCGGCTGCCACTTGATGAAGCTCTT
CTTGCTCTCCGACGTGGTGGAGATGTTGGAGCTGCTGGCACTGAGTGTCC
TCTCGCGTTCCGTGACATTTATGGTGCTGACGGAGTGGGCATGACGCAGA
GTCTTGCCGCTGGCCCCATCGCTCCGCGCCGTCTTTCCAAAGCTGTGCGT
GATTCTGCGCAGGAAGCGATCCTTTTTCTTCGGCTTGTGCTCCGGCAGGG
GTGAGCCGGTGTCACCGGAAACCGAAACGATTGTGGTCTCCGCCTCCGGC
ACTTTGCAGCTGTTGTAGTTTGGCATATCAGTGACATCCTTGTCGTTGAT
CTGAATCCGAATGCTGGGAGTGGTCACCCGGGGAGCCGATTCCTCCACCG
GCGAGGGAGTCTGCACCTGGCGCGTGGAGTAGATCGAAAAGGCATCCAGA
TCGTGTAGGGAACGAGCCAACTTGTCCCAGAAGTTGAACAACTTGGAGTC
CCCGGCGTACTTGATGTGCGTGTAAATGCCCAGGGTCTGGGGTATGTGCA
TGTCCGTTTTGTACAGAATCGGTATGATCTTGCGAGTGTGATTCTCAATC
TGGATCTTTTGGGTGAAGTTCACGAGGTACGTGTTCTCCGGACTCCGAAG
AAACTCCTCTGTGAGCACGACGATCAGGTGATTGCAGCGGGTGGCCATGA
AATGGGATAGCTGGACATGCTCGAACGGAACGCCCATTAGCATGTCGCGG
TGGCGCAGGAATAGCCTGAGATTGTATCGCTCAGACTCTAGATTATTCAT
GATCTCGGTGGCATGATCGATGTCTGCCTCCGCGTACAGAACACATGCGT
TGTATCTGGGCAGCGGTTGGNCCATCTGTACACATCTCTGGTCCTCGTCG
CTGAAGATCTGCACACTT
BS04654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2078-PA | 1614 | Myd88-RA | 663..1614 | 968..17 | 4716 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-RC | 2424 | CG2078-RC | 1257..2208 | 968..17 | 4734 | 99.8 | Minus |
| Myd88-RB | 3613 | CG2078-RB | 1591..2542 | 968..17 | 4734 | 99.8 | Minus |
| Myd88-RA | 2758 | CG2078-RA | 1591..2542 | 968..17 | 4734 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9303894..9304335 | 17..458 | 2210 | 100 | Plus |
| 2R | 25286936 | 2R | 9304974..9305161 | 459..646 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 9305234..9305403 | 646..815 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 9305467..9305620 | 815..968 | 744 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:22:30 has no hits.
BS04654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:03 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-PA | 663..1614 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:19 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2078-PA | 663..1614 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:09 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 1591..2542 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:56 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 1591..2542 | 17..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:56 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9303894..9304335 | 17..458 | 100 | <- | Plus |
| 2R | 9304974..9305160 | 459..645 | 100 | <- | Plus |
| 2R | 9305234..9305402 | 646..814 | 100 | <- | Plus |
| 2R | 9305467..9305620 | 815..968 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:09 Download gff for
BS04654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5191399..5191840 | 17..458 | 100 | <- | Plus |
| arm_2R | 5192479..5192665 | 459..645 | 100 | <- | Plus |
| arm_2R | 5192739..5192907 | 646..814 | 100 | <- | Plus |
| arm_2R | 5192972..5193125 | 815..968 | 98 | | Plus |
BS04654.5prime Sequence
898 bp (888 high quality bases) assembled on 2005-11-29
> BS04654.5prime
GAAGTTATCAGTCGACATGCGCCCTCGATTTGTATGCCATCAGCAGCACT
CGGTGGCCCATTCCCACTACCAGCCCCACTCCCACTTCCATCACCATACC
CACCGCCATCCCAATCCGCCCCATCACCATCACATTTACGGCGCCACTGA
CGTCAGTTATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCCGAGGGAG
TTATGGACTCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGGGCACTTC
AACGAGACCCCATTATCCGCACTGGGCATCGAGACCCGCACCCAGCTGTC
CCGCATGCTGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGCTACCAGC
GGGACTGGCGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATTCGTCGAC
GAGAACGCCAACAATCCCATGGATCTGGTGCTGATCAGCTGGAGCCAGCG
GAGTCCCCAGACCGCCAAGGTGGGCCATCTGGAACACTTCCTGGGCATTA
TCGATCGGTGGGACGTCTGCGACGATATCCAGGAGAATCTGGCCAAGGAC
ACCCAGCGCTTCATCATGAAACAGGAGCAGCGACAGACTGCTCTCGTGGA
GGCGTGTCCGCCGCCCCCCAGCGACTGCTTCGAGACCAACAACAACTACA
GCAGCAGCAACAACATCACAGTGGGCCAAAGTGTGCAGATCCTCAGCGAC
GAGGACCAGAGATGTGTACAGATGGGCCAACCGCTGCCCAGATACAACGC
ATGTGTTCTGTACGCGGAGGCAGACATCGATCATGCCACCGAGATCATGA
ATAATCTAGAGTCTGAGCGATACAATCTCAGGCTATTCCTGCGCCACCGC
GACATGCTAATGGGCGTTCCGTTCGAGCATGTCCAGCTATTCCATTTC
BS04654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2078-PA | 1614 | Myd88-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-RC | 2424 | CG2078-RC | 595..1476 | 17..898 | 4395 | 99.9 | Plus |
| Myd88-RB | 3613 | CG2078-RB | 929..1810 | 17..898 | 4395 | 99.9 | Plus |
| Myd88-RA | 2758 | CG2078-RA | 929..1810 | 17..898 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9307269..9307794 | 542..17 | 2630 | 100 | Minus |
| 2R | 25286936 | 2R | 9305467..9305757 | 832..542 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 9305337..9305403 | 898..832 | 320 | 98.5 | Minus |
Blast to na_te.dros performed 2015-02-11 15:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6932 | 554..677 | 141 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6817 | 615..709 | 137 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2428 | 631..668 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2613..2653 | 628..668 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 619..668 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6816 | 619..668 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1576 | 619..668 | 132 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6753 | 633..668 | 126 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6849 | 619..668 | 126 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2911 | 570..668 | 125 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2401 | 619..668 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2476 | 637..668 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1556 | 635..669 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2522 | 619..669 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1122..1154 | 635..667 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6868 | 619..669 | 119 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2824 | 622..668 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6902 | 549..670 | 118 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2350 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2464..2497 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6759 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2413 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2455 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6828 | 619..668 | 115 | 70 | Plus |
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1181..1228 | 622..669 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2838 | 619..664 | 113 | 71.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 543..579 | 637..673 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2677 | 619..680 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5633..5692 | 621..680 | 111 | 65 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1017 | 635..676 | 110 | 75.6 | Plus |
BS04654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:04 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:20 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2078-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 10:59:54 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 922..1810 | 10..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:34 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 922..1810 | 10..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:34 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9305337..9305402 | 833..898 | 98 | <- | Minus |
| 2R | 9305467..9305756 | 543..832 | 100 | <- | Minus |
| 2R | 9307269..9307801 | 10..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 10:59:54 Download gff for
BS04654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5192842..5192907 | 833..898 | 98 | <- | Minus |
| arm_2R | 5192972..5193261 | 543..832 | 100 | <- | Minus |
| arm_2R | 5194774..5195306 | 10..542 | 99 | | Minus |
BS04654.complete Sequence
1646 bp (1646 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634990
> BS04654.complete
GAAGTTATCAGTCGACATGCGCCCTCGATTTGTATGCCATCAGCAGCACT
CGGTGGCCCATTCCCACTACCAGCCCCACTCCCACTTCCATCACCATACC
CACCGCCATCCCAATCCGCCCCATCACCATCACATTTACGGCGCCACTGA
CGTCAGTTATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCCGAGGGAG
TTATGGACTCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGGGCACTTC
AACGAGACCCCATTATCCGCACTGGGCATCGAGACCCGCACCCAGCTGTC
CCGCATGCTGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGCTACCAGC
GGGACTGGCGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATTCGTCGAC
GAGAACGCCAACAATCCCATGGATCTGGTGCTGATCAGCTGGAGCCAGCG
GAGTCCCCAGACCGCCAAGGTGGGCCATCTGGAACACTTCCTGGGCATTA
TCGATCGGTGGGACGTCTGCGACGATATCCAGGAGAATCTGGCCAAGGAC
ACCCAGCGCTTCATCATGAAACAGGAGCAGCGACAGACTGCTCTCGTGGA
GGCGTGTCCGCCGCCCCCCAGCGACTGCTTCGAGACCAACAACAACTACA
GCAGCAGCAACAACATCACAGTGGGCCAAAGTGTGCAGATCCTCAGCGAC
GAGGACCAGAGATGTGTACAGATGGGCCAACCGCTGCCCAGATACAACGC
ATGTGTTCTGTACGCGGAGGCAGACATCGATCATGCCACCGAGATCATGA
ATAATCTAGAGTCTGAGCGATACAATCTCAGGCTATTCCTGCGCCACCGC
GACATGCTAATGGGCGTTCCGTTCGAGCATGTCCAGCTATCCCATTTCAT
GGCCACCCGCTGCAATCACCTGATCGTCGTGCTCACAGAGGAGTTTCTTC
GGAGTCCGGAGAACACGTACCTCGTGAACTTCACCCAAAAGATCCAGATT
GAGAATCACACTCGCAAGATCATACCGATTCTGTACAAAACGGACATGCA
CATACCCCAGACCCTGGGCATTTACACGCACATCAAGTACGCCGGGGACT
CCAAGTTGTTCAACTTCTGGGACAAGTTGGCTCGTTCCCTACACGATCTG
GATGCCTTTTCGATCTACTCCACGCGCCAGGTGCAGACTCCCTCGCCGGT
GGAGGAATCGGCTCCCCGGGTGACCACTCCCAGCATTCGGATTCAGATCA
ACGACAAGGATGTCACTGATATGCCAAACTACAACAGCTGCAAAGTGCCG
GAGGCGGAGACCACAATCGTTTCGGTTTCCGGTGACACCGGCTCACCCCT
GCCGGAGCACAAGCCGAAGAAAAAGGATCGCTTCCTGCGCAGAATCACGC
ACAGCTTTGGAAAGACGGCGCGGAGCGATGGGGCCAGCGGCAAGACTCTG
CGTCATGCCCACTCCGTCAGCACCATAAATGTCACGGAACGCGAGAGGAC
ACTCAGTGCCAGCAGCTCCAACATCTCCACCACGTCGGAGAGCAAGAAGA
GCTTCATCAAGTGGCAGCCGAACATCCTGAAGAAGGCCCTATTCTCGCGA
TCCAGCAGCAAGCTGCAGACGCCGGGCTGAAAGCTTTCTAGACCAT
BS04654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-RC | 1614 | CG2078-PC | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| Myd88-RB | 1614 | CG2078-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| Myd88-RA | 1614 | CG2078-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-RC | 2424 | CG2078-RC | 595..2208 | 17..1630 | 8070 | 100 | Plus |
| Myd88-RB | 3613 | CG2078-RB | 929..2542 | 17..1630 | 8070 | 100 | Plus |
| Myd88-RA | 2758 | CG2078-RA | 929..2542 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9307269..9307794 | 542..17 | 2630 | 100 | Minus |
| 2R | 25286936 | 2R | 9303894..9304335 | 1630..1189 | 2210 | 100 | Minus |
| 2R | 25286936 | 2R | 9305467..9305757 | 832..542 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 9304974..9305161 | 1188..1001 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 9305234..9305403 | 1001..832 | 850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6932 | 554..677 | 141 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6817 | 615..709 | 137 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2428 | 631..668 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2613..2653 | 628..668 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 619..668 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6816 | 619..668 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1576 | 619..668 | 132 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6849 | 619..668 | 126 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6753 | 633..668 | 126 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2911 | 570..668 | 125 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2401 | 619..668 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2476 | 637..668 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1556 | 635..669 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2522 | 619..669 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1122..1154 | 635..667 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6868 | 619..669 | 119 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6902 | 549..670 | 118 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2824 | 622..668 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2350 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2464..2497 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6759 | 635..668 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2413 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2455 | 619..668 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6828 | 619..668 | 115 | 70 | Plus |
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1181..1228 | 622..669 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2838 | 619..664 | 113 | 71.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 543..579 | 637..673 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2677 | 619..680 | 112 | 64.5 | Plus |
BS04654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:51 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 1..1614 | 17..1630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:03 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 876..2496 | 10..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:29 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 929..2541 | 17..1629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:51 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 876..2496 | 10..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:51 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 929..2541 | 17..1629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:51 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9305234..9305402 | 833..1001 | 100 | <- | Minus |
| 2R | 9305467..9305756 | 543..832 | 100 | <- | Minus |
| 2R | 9303895..9304335 | 1189..1629 | 100 | <- | Minus |
| 2R | 9304974..9305160 | 1002..1188 | 100 | <- | Minus |
| 2R | 9307269..9307794 | 17..542 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:29 Download gff for
BS04654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5192739..5192907 | 833..1001 | 100 | <- | Minus |
| arm_2R | 5192972..5193261 | 543..832 | 100 | <- | Minus |
| arm_2R | 5191400..5191840 | 1189..1629 | 100 | <- | Minus |
| arm_2R | 5192479..5192665 | 1002..1188 | 100 | <- | Minus |
| arm_2R | 5194774..5195299 | 17..542 | 100 | | Minus |
BS04654.pep Sequence
Translation from 16 to 1629
> BS04654.pep
MRPRFVCHQQHSVAHSHYQPHSHFHHHTHRHPNPPHHHHIYGATDVSYRR
YRTAGMVVAEGVMDSGSGSGTGTGLGHFNETPLSALGIETRTQLSRMLNR
KKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLISWSQRSPQTA
KVGHLEHFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEACPPP
PSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYA
EADIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCN
HLIVVLTEEFLRSPENTYLVNFTQKIQIENHTRKIIPILYKTDMHIPQTL
GIYTHIKYAGDSKLFNFWDKLARSLHDLDAFSIYSTRQVQTPSPVEESAP
RVTTPSIRIQINDKDVTDMPNYNSCKVPEAETTIVSVSGDTGSPLPEHKP
KKKDRFLRRITHSFGKTARSDGASGKTLRHAHSVSTINVTERERTLSASS
SNISTTSESKKSFIKWQPNILKKALFSRSSSKLQTPG*
BS04654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-PC | 537 | CG2078-PC | 1..537 | 1..537 | 2850 | 100 | Plus |
| Myd88-PB | 537 | CG2078-PB | 1..537 | 1..537 | 2850 | 100 | Plus |
| Myd88-PA | 537 | CG2078-PA | 1..537 | 1..537 | 2850 | 100 | Plus |
