Clone BS04656 Report

Search the DGRC for BS04656

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptPino-RA
Protein status:BS04656.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04656.3prime Sequence

546 bp (545 high quality bases) assembled on 2005-12-02

> BS04656.3prime
ATGGTCTAGAAAGCTTCTAGATGCGACCGCTTTTGCTCGCCGTCGACGTG
GACAGCTGTTCCAGGCGGGAGCACAGCTCCTGGGCCAGGCGCAGTTGATT
CGCAGCGGCAGCGGCACACGAGGTGGCGGCTCCAGCGCCTGCTCCCACGG
GCAACTGGACTCCGGCCACGACTTCCGGGTAGCTGATGCACACGCCCACC
CAGCGAGCTTGACTGCAGGCATGGGACATGGCGAAATCACGTTTCCATTG
GACACCGCACTGGCCGTCGCACAGGGGACAGGGACGCTCCAGGCTGTAGC
CACCGCATTCGCTGCAGTCGAGGGACACATGGTCGTCCGTCCAGGAGACG
CCGCAGGTGAAGCAGGAGCCCATGTGCTGGCGCAGCTCCTCAATGGTCAG
CACGTTGTCCATGCTGATCTCCAGGGGACTGCCCACCAGATCTGGCAGCG
AGGCAGACAGACCGAGATTGTGATGCGACAGGGGACTGCAGATGTCGGCG
ATTTGGGGACCGTGAACACTGGCGATCGACATGTCGACTGATAACT

BS04656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4710-PB 750 smi21F-RB 235..750 532..17 2580 100 Minus
CG4710-PA 516 smi21F-RA 1..516 532..17 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1051 532..16 2585 100 Minus
Pino-RA 2079 CG4710-RA 484..1000 532..16 2585 100 Minus
Pino-RB 1980 CG4710-RB 385..901 532..16 2585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 227..476 1250 100 Plus
2L 23513712 2L 1115733..1115944 16..227 1060 100 Plus
2L 23513712 2L 1117443..1117499 476..532 285 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:26:38 has no hits.

BS04656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:05 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PB 227..750 17..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:21 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PA 1..516 17..532 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:57 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 13..540 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:14 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 13..540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:14 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1115731..1115943 13..226 99 <- Plus
2L 1116441..1116690 227..476 100 <- Plus
2L 1117444..1117507 477..540 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:57 Download gff for BS04656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1115731..1115943 13..226 99 <- Plus
arm_2L 1116441..1116690 227..476 100 <- Plus
arm_2L 1117444..1117507 477..540 95   Plus

BS04656.5prime Sequence

546 bp (545 high quality bases) assembled on 2005-12-02

> BS04656.5prime
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCTAGAAGCTTTCTAGACC

BS04656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4710-PB 750 smi21F-RB 235..750 17..532 2580 100 Plus
CG4710-PA 516 smi21F-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1051 17..533 2585 100 Plus
Pino-RA 2079 CG4710-RA 484..1000 17..533 2585 100 Plus
Pino-RB 1980 CG4710-RB 385..901 17..533 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 322..73 1250 100 Minus
2L 23513712 2L 1115733..1115944 533..322 1060 100 Minus
2L 23513712 2L 1117443..1117499 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:11:45 has no hits.

BS04656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:06 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PB 227..750 9..532 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:22 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4710-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:29:50 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 9..536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:59 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 377..903 9..536 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:59 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1115731..1115943 323..536 99 <- Minus
2L 1116441..1116690 73..322 100 <- Minus
2L 1117444..1117507 9..72 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:29:50 Download gff for BS04656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1115731..1115943 323..536 99 <- Minus
arm_2L 1116441..1116690 73..322 100 <- Minus
arm_2L 1117444..1117507 9..72 95   Minus

BS04656.complete Sequence

548 bp (548 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634991

> BS04656.complete
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCTAGAAGCTTTCTAGACCAT

BS04656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 516 CG4710-PC 1..516 17..532 2580 100 Plus
Pino-RA 516 CG4710-PA 1..516 17..532 2580 100 Plus
Pino-RB 750 CG4710-PB 235..750 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-RC 2130 CG4710-RC 535..1051 17..533 2585 100 Plus
Pino-RA 2079 CG4710-RA 484..1000 17..533 2585 100 Plus
Pino-RB 1980 CG4710-RB 385..901 17..533 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1116441..1116690 322..73 1250 100 Minus
2L 23513712 2L 1115733..1115944 533..322 1060 100 Minus
2L 23513712 2L 1117443..1117499 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:59:57 has no hits.

BS04656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:30 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
smi21F-RB 227..750 9..532 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:16 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RA 584..1110 9..536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:24 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 385..900 17..532 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:36 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
Pino-RB 385..900 17..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:36 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1115734..1115943 323..532 100 <- Minus
2L 1116441..1116690 73..322 100 <- Minus
2L 1117444..1117499 17..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:24 Download gff for BS04656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1115734..1115943 323..532 100 <- Minus
arm_2L 1116441..1116690 73..322 100 <- Minus
arm_2L 1117444..1117499 17..72 100   Minus

BS04656.pep Sequence

Translation from 16 to 531

> BS04656.pep
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRI*

BS04656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pino-PC 171 CG4710-PC 1..171 1..171 911 100 Plus
Pino-PA 171 CG4710-PA 1..171 1..171 911 100 Plus
Pino-PB 249 CG4710-PB 79..249 1..171 911 100 Plus