Clone Sequence Records
BS04656.3prime Sequence
546 bp (545 high quality bases) assembled on 2005-12-02
> BS04656.3prime
ATGGTCTAGAAAGCTTCTAGATGCGACCGCTTTTGCTCGCCGTCGACGTG
GACAGCTGTTCCAGGCGGGAGCACAGCTCCTGGGCCAGGCGCAGTTGATT
CGCAGCGGCAGCGGCACACGAGGTGGCGGCTCCAGCGCCTGCTCCCACGG
GCAACTGGACTCCGGCCACGACTTCCGGGTAGCTGATGCACACGCCCACC
CAGCGAGCTTGACTGCAGGCATGGGACATGGCGAAATCACGTTTCCATTG
GACACCGCACTGGCCGTCGCACAGGGGACAGGGACGCTCCAGGCTGTAGC
CACCGCATTCGCTGCAGTCGAGGGACACATGGTCGTCCGTCCAGGAGACG
CCGCAGGTGAAGCAGGAGCCCATGTGCTGGCGCAGCTCCTCAATGGTCAG
CACGTTGTCCATGCTGATCTCCAGGGGACTGCCCACCAGATCTGGCAGCG
AGGCAGACAGACCGAGATTGTGATGCGACAGGGGACTGCAGATGTCGGCG
ATTTGGGGACCGTGAACACTGGCGATCGACATGTCGACTGATAACT
BS04656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4710-PB | 750 | smi21F-RB | 235..750 | 532..17 | 2580 | 100 | Minus |
CG4710-PA | 516 | smi21F-RA | 1..516 | 532..17 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1051 | 532..16 | 2585 | 100 | Minus |
Pino-RA | 2079 | CG4710-RA | 484..1000 | 532..16 | 2585 | 100 | Minus |
Pino-RB | 1980 | CG4710-RB | 385..901 | 532..16 | 2585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 227..476 | 1250 | 100 | Plus |
2L | 23513712 | 2L | 1115733..1115944 | 16..227 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 1117443..1117499 | 476..532 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:26:38 has no hits.
BS04656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:05 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PB | 227..750 | 17..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:21 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:57 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 13..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:14 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 13..540 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:14 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1115731..1115943 | 13..226 | 99 | <- | Plus |
2L | 1116441..1116690 | 227..476 | 100 | <- | Plus |
2L | 1117444..1117507 | 477..540 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:57 Download gff for
BS04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1115731..1115943 | 13..226 | 99 | <- | Plus |
arm_2L | 1116441..1116690 | 227..476 | 100 | <- | Plus |
arm_2L | 1117444..1117507 | 477..540 | 95 | | Plus |
BS04656.5prime Sequence
546 bp (545 high quality bases) assembled on 2005-12-02
> BS04656.5prime
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCTAGAAGCTTTCTAGACC
BS04656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4710-PB | 750 | smi21F-RB | 235..750 | 17..532 | 2580 | 100 | Plus |
CG4710-PA | 516 | smi21F-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1051 | 17..533 | 2585 | 100 | Plus |
Pino-RA | 2079 | CG4710-RA | 484..1000 | 17..533 | 2585 | 100 | Plus |
Pino-RB | 1980 | CG4710-RB | 385..901 | 17..533 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 322..73 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1115733..1115944 | 533..322 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117499 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:11:45 has no hits.
BS04656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:06 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PB | 227..750 | 9..532 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:22 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4710-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:29:50 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 9..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:59 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 377..903 | 9..536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:59 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1115731..1115943 | 323..536 | 99 | <- | Minus |
2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
2L | 1117444..1117507 | 9..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:29:50 Download gff for
BS04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1115731..1115943 | 323..536 | 99 | <- | Minus |
arm_2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
arm_2L | 1117444..1117507 | 9..72 | 95 | | Minus |
BS04656.complete Sequence
548 bp (548 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634991
> BS04656.complete
GAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCCCAAATCG
CCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTCTGCCTCG
CTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACAACGTGCT
GACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACCTGCGGCG
TCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATGCGGTGGC
TACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCA
ATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGG
TGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCC
GTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAA
TCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCA
CGTCGACGGCGAGCAAAAGCGGTCGCATCTAGAAGCTTTCTAGACCAT
BS04656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 516 | CG4710-PC | 1..516 | 17..532 | 2580 | 100 | Plus |
Pino-RA | 516 | CG4710-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Pino-RB | 750 | CG4710-PB | 235..750 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-RC | 2130 | CG4710-RC | 535..1051 | 17..533 | 2585 | 100 | Plus |
Pino-RA | 2079 | CG4710-RA | 484..1000 | 17..533 | 2585 | 100 | Plus |
Pino-RB | 1980 | CG4710-RB | 385..901 | 17..533 | 2585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1116441..1116690 | 322..73 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 1115733..1115944 | 533..322 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 1117443..1117499 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:59:57 has no hits.
BS04656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:30 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smi21F-RB | 227..750 | 9..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:16 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RA | 584..1110 | 9..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:24 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 385..900 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:36 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pino-RB | 385..900 | 17..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:36 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1115734..1115943 | 323..532 | 100 | <- | Minus |
2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
2L | 1117444..1117499 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:24 Download gff for
BS04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1115734..1115943 | 323..532 | 100 | <- | Minus |
arm_2L | 1116441..1116690 | 73..322 | 100 | <- | Minus |
arm_2L | 1117444..1117499 | 17..72 | 100 | | Minus |
BS04656.pep Sequence
Translation from 16 to 531
> BS04656.pep
MSIASVHGPQIADICSPLSHHNLGLSASLPDLVGSPLEISMDNVLTIEEL
RQHMGSCFTCGVSWTDDHVSLDCSECGGYSLERPCPLCDGQCGVQWKRDF
AMSHACSQARWVGVCISYPEVVAGVQLPVGAGAGAATSCAAAAANQLRLA
QELCSRLEQLSTSTASKSGRI*
BS04656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pino-PC | 171 | CG4710-PC | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PA | 171 | CG4710-PA | 1..171 | 1..171 | 911 | 100 | Plus |
Pino-PB | 249 | CG4710-PB | 79..249 | 1..171 | 911 | 100 | Plus |