Clone BS04657 Report

Search the DGRC for BS04657

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripten-RA
Protein status:BS04657.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04657.3prime Sequence

902 bp (788 high quality bases) assembled on 2005-12-02

> BS04657.3prime
ATGGTCTAGAAAGCTTTTAGGGGATCTGCCCGTTCATGCGCATCTCGAGC
TCCTCCTCCTCCTTGGTCAGCGGCACGGTGGTGTGGTTGTACAATCCCTG
GGCCATCAGCTGCAGTGCCAGCGGATTTTTGGAGCCCGTCGACTTCTTGA
TCTTGGCCCGCTTGTTCTGGAACCAGATCTTGATCTGCGCCTCGTTCAGG
CCCAACTCGCTGCTCAGCTGCTGGCGTCTCCGCTCGGTCAGATAGCGATT
CTCGTTGAACTCCCGCTTAAGGCGGGCCAACTGCTCGCTGGAGAACGCGG
TGCGTGGACGCTTCTCGTCGTTGGTCTTGTCCTTTGGCTGTTTGGGGCGG
CGGTAGCGGGGTCCTGAGCTGGGACGATCGCTGTAGCGGGTGCAGTACAC
CCAGGCGGGCCACATCTCGTTCTTGCCGCCCTCTGTGGTGGTGGATCCCG
TCTCGGAACGCGTGTCATCCGAGGACTCCATTCCGGAATCTCGGCTAACG
GCGGATGGCGGCGGGATTGGCTGCGGCTGGGGACTGCTGGCATTGACTCC
GGATCCACTGGCTCCCAGTCGGCTACTGGGCGAGGAGTTCAAGGAACTGG
CCGCCGAGGAGCAACCCGACGAGGAGGAGCTCGAGCTGGTGGCCACGGAA
GAGGTGCTGCTAATGGTCGAGGCATTGGAGGCGGGTGGCGGACTGGCCAA
GCTGCTGGCACTGCTACTCAGCGGAGGTTGGGTCATCGTAGGGGCAGCAG
GTTGTCCGATCTGCGAGACCGCCTTGCACAGGGATCCCAGAGCAGATTTC
TCTGGATTGGCATCGCTCATCTTGGAGCTCATGGGCGGCGGGATGACGGC
ATTGGCTGCACTCCTGCGCAGCCGACTCTGCACGATTTCCTCGTGTATCC
TG

BS04657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 774..1659 902..17 4430 100 Minus
CG9015-PA 1659 en-RA 774..1659 902..17 4430 100 Minus
CG17835-PD 1731 inv-RD 1528..1575 199..152 215 97.9 Minus
CG17835-PC 1731 inv-RC 1528..1575 199..152 215 97.9 Minus
CG17835-PA 1731 inv-RA 1528..1575 199..152 215 97.9 Minus
CG17835-PB 1731 inv-RB 1528..1575 199..152 215 97.9 Minus
CG17835-PD 1731 inv-RD 1255..1295 403..363 180 97.5 Minus
CG17835-PC 1731 inv-RC 1255..1295 403..363 180 97.5 Minus
CG17835-PA 1731 inv-RA 1255..1295 403..363 180 97.5 Minus
CG17835-PB 1731 inv-RB 1255..1295 403..363 180 97.5 Minus
CG17835-PD 1731 inv-RD 1600..1644 127..83 175 95.5 Minus
CG17835-PC 1731 inv-RC 1600..1644 127..83 175 95.5 Minus
CG17835-PA 1731 inv-RA 1600..1644 127..83 175 95.5 Minus
CG17835-PB 1731 inv-RB 1600..1644 127..83 175 95.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 987..1872 902..17 4430 100 Minus
en-RB 2792 CG9015-RB 1314..2199 902..17 4430 100 Minus
inv-RE 4776 CG17835-RE 1711..1947 284..48 705 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526358..11526897 363..902 2700 100 Plus
2R 25286936 2R 11524599..11524849 17..267 1255 100 Plus
2R 25286936 2R 11506652..11506866 262..48 670 87.4 Minus
2R 25286936 2R 11525128..11525228 266..366 505 100 Plus
2R 25286936 2R 11477221..11477270 412..363 205 94 Minus
Blast to na_te.dros performed on 2015-02-01 09:08:49 has no hits.

BS04657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:07 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 774..1659 17..902 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:24 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 774..1659 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:08 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1314..2204 12..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:00 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 1314..2204 12..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:00 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11524594..11524847 12..265 99 <- Plus
2R 11525128..11525225 266..363 100 <- Plus
2R 11526359..11526897 364..902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:08 Download gff for BS04657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7412099..7412352 12..265 99 <- Plus
arm_2R 7412633..7412730 266..363 100 <- Plus
arm_2R 7413864..7414402 364..902 100   Plus

BS04657.5prime Sequence

865 bp (800 high quality bases) assembled on 2005-11-29

> BS04657.5prime
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGCTTCAATCCGGCTGCCTATCCCAGGATACACG
AGGAAATCGTGCAGAGTCGGCTGCGCAGGAGTGCAGCCAATGCCGTCATC
CCGCCGCCCATGAGC

BS04657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9015-PB 1659 en-RB 1..849 17..865 4245 100 Plus
CG9015-PA 1659 en-RA 1..849 17..865 4245 100 Plus
CG5460-PB 3180 H-RB 2758..2784 227..253 135 100 Plus
CG5460-PC 3180 H-RC 2758..2784 227..253 135 100 Plus
CG5460-PA 3234 H-RA 2812..2838 227..253 135 100 Plus
CG5460-PD 3234 H-RD 2812..2838 227..253 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 214..1062 17..865 4245 100 Plus
en-RB 2792 CG9015-RB 541..1389 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526822..11527670 865..17 4245 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:00:18 has no hits.

BS04657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:08 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PB 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:25 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9015-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:29 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1389 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:30 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..1389 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:30 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11526822..11527670 17..865 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:29 Download gff for BS04657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7414327..7415175 17..865 100   Minus

BS04657.complete Sequence

1691 bp (1691 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634992

> BS04657.complete
GAAGTTATCAGTCGACATGGCCCTGGAGGATCGCTGCAGTCCACAGTCAG
CGCCCAGCCCCATTACCCTACAAATGCAGCATCTTCACCACCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAAATGCAGCACCTCCACCAGCTGCAGCA
ACTGCAGCAGTTGCACCAACAGCAACTGGCCGCCGGTGTCTTCCACCATC
CGGCAATGGCCTTCGATGCCGCTGCAGCCGCCGCTGCTGCAGCTGCTGCT
GCGGCCGCCCACGCTCATGCTGCTGCACTGCAGCAGCGCCTCAGTGGCAG
TGGATCGCCCGCATCCTGCTCCACGCCCGCCTCGTCCACGCCGCTGACCA
TCAAGGAGGAGGAAAGCGACTCCGTGATCGGTGACATGAGTTTCCACAAT
CAGACGCACACCACCAACGAGGAGGAGGAGGCGGAGGAGGATGACGACAT
TGATGTGGATGTGGATGATACGTCGGCGGGCGGACGCCTGCCACCACCCG
CCCACCAGCAGCAGTCGACGGCCAAGCCCTCGCTGGCCTTTTCCATCTCC
AACATCCTGAGCGATCGTTTCGGAGATGTCCAGAAGCCGGGCAAGTCGAT
GGAGAACCAGGCCAGCATATTCCGCCCCTTCGAGGCGAGTCGTTCCCAGA
CTGCCACGCCCTCCGCCTTTACAAGAGTGGATCTGCTGGAGTTTAGCCGG
CAACAGCAGGCTGCCGCCGCAGCCGCTACTGCGGCCATGATGCTGGAACG
GGCCAACTTCCTTAACTGCTTCAATCCGGCTGCCTATCCCAGGATACACG
AGGAAATCGTGCAGAGTCGGCTGCGCAGGAGTGCAGCCAATGCCGTCATC
CCGCCGCCCATGAGCTCCAAGATGAGCGATGCCAATCCAGAGAAATCTGC
TCTGGGATCCCTGTGCAAGGCGGTCTCGCAGATCGGACAACCTGCTGCCC
CTACGATGACCCAACCTCCGCTGAGTAGCAGTGCCAGCAGCTTGGCCAGT
CCGCCACCCGCCTCCAATGCCTCGACCATTAGCAGCACCTCTTCCGTGGC
CACCAGCTCGAGCTCCTCCTCGTCGGGTTGCTCCTCGGCGGCCAGTTCCT
TGAACTCCTCGCCCAGTAGCCGACTGGGAGCCAGTGGATCCGGAGTCAAT
GCCAGCAGTCCCCAGCCGCAGCCAATCCCGCCGCCATCCGCCGTTAGCCG
AGATTCCGGAATGGAGTCCTCGGATGACACGCGTTCCGAGACGGGATCCA
CCACCACAGAGGGCGGCAAGAACGAGATGTGGCCCGCCTGGGTGTACTGC
ACCCGCTACAGCGATCGTCCCAGCTCAGGACCCCGCTACCGCCGCCCCAA
ACAGCCAAAGGACAAGACCAACGACGAGAAGCGTCCACGCACCGCGTTCT
CCAGCGAGCAGTTGGCCCGCCTTAAGCGGGAGTTCAACGAGAATCGCTAT
CTGACCGAGCGGAGACGCCAGCAGCTGAGCAGCGAGTTGGGCCTGAACGA
GGCGCAGATCAAGATCTGGTTCCAGAACAAGCGGGCCAAGATCAAGAAGT
CGACGGGCTCCAAAAATCCGCTGGCACTGCAGCTGATGGCCCAGGGATTG
TACAACCACACCACCGTGCCGCTGACCAAGGAGGAGGAGGAGCTCGAGAT
GCGCATGAACGGGCAGATCCCCTAAAAGCTTTCTAGACCAT

BS04657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 1659 CG9015-PA 1..1659 17..1675 8295 100 Plus
en-RB 1659 CG9015-PB 1..1659 17..1675 8295 100 Plus
inv-RE 1731 CG17835-PE 1443..1679 1408..1644 705 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
en-RA 2465 CG9015-RA 214..1872 17..1675 8295 100 Plus
en-RB 2792 CG9015-RB 541..2199 17..1675 8295 100 Plus
inv-RE 4776 CG17835-RE 1711..1947 1408..1644 705 86.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11526358..11527670 1329..17 6565 100 Minus
2R 25286936 2R 11524599..11524849 1675..1425 1255 100 Minus
2R 25286936 2R 11506652..11506866 1430..1644 670 87.4 Plus
2R 25286936 2R 11525128..11525228 1426..1326 505 100 Minus
2R 25286936 2R 11477221..11477270 1280..1329 205 94 Plus
Blast to na_te.dros performed on 2014-11-27 13:42:27 has no hits.

BS04657.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:53 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 1..1659 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:05 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 214..1877 17..1680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:42 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..2197 17..1673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:53 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
en-RA 214..1877 17..1680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:07 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
en-RB 541..2197 17..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:07 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11524601..11524847 1427..1673 100 <- Minus
2R 11525128..11525225 1329..1426 100 <- Minus
2R 11526359..11527670 17..1328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:42 Download gff for BS04657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7412106..7412352 1427..1673 100 <- Minus
arm_2R 7412633..7412730 1329..1426 100 <- Minus
arm_2R 7413864..7415175 17..1328 100   Minus

BS04657.pep Sequence

Translation from 16 to 1674

> BS04657.pep
MALEDRCSPQSAPSPITLQMQHLHHQQQQQQQQQQQMQHLHQLQQLQQLH
QQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAALQQRLSGSGSPAS
CSTPASSTPLTIKEEESDSVIGDMSFHNQTHTTNEEEEAEEDDDIDVDVD
DTSAGGRLPPPAHQQQSTAKPSLAFSISNILSDRFGDVQKPGKSMENQAS
IFRPFEASRSQTATPSAFTRVDLLEFSRQQQAAAAAATAAMMLERANFLN
CFNPAAYPRIHEEIVQSRLRRSAANAVIPPPMSSKMSDANPEKSALGSLC
KAVSQIGQPAAPTMTQPPLSSSASSLASPPPASNASTISSTSSVATSSSS
SSSGCSSAASSLNSSPSSRLGASGSGVNASSPQPQPIPPPSAVSRDSGME
SSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSDRPSSGPRYRRPKQPKDK
TNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI
WFQNKRAKIKKSTGSKNPLALQLMAQGLYNHTTVPLTKEEEELEMRMNGQ
IP*

BS04657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
en-PA 552 CG9015-PA 1..552 1..552 2805 100 Plus
en-PB 552 CG9015-PB 1..552 1..552 2805 100 Plus
inv-PE 576 CG17835-PE 294..561 291..544 576 45.8 Plus
inv-PB 576 CG17835-PB 294..561 291..544 576 45.8 Plus
inv-PD 576 CG17835-PD 294..561 291..544 576 45.8 Plus