Clone Sequence Records
BS04659.3prime Sequence
878 bp (841 high quality bases) assembled on 2005-12-02
> BS04659.3prime
ATGGTCTAGAAAGCTTTTACGACTCCGCACCCTCCAGGAAAGTCTTAAAG
GAATTCTTAATGTTGTCGTTGGCAAACGTTGGTTGCTTGAGAGCCTCGCG
AAGAGCAAATCGACAGTTCTTGACATCGTAGTCCGAATGGAATACCTCCT
TGCAGGGCAACAAACGGAGCTGCATCAGTACATAGTTGAGTACACGTGTC
TCCTGCTTTGTCTTGATGGCATAGTCAAAGGTGGCCTGGTACAAGGAGAC
GGCCAGATCCAACGCAGCTTTCGAGGATTGCGACAAATGCGCGCACTTCA
AGGTGGTGAAGACGAGCAGTAGCAAATGGTTGTCGCCGGTGAATTGGTTG
ACAATCGACTGCAAAGCCTCAAGTTTGTTATCCATATCTAGCGAATCGAA
ATCTTCCTGGGAGCAGGGTTTCTGGCTCAAACAGAACTTCTCTGGAGTGC
ATTTTTGGCTGATCGTCTTGTTCGCGACCGCAAAAGTTTCGCTGGCCATC
GAGTTGGTTGTGTCGTTAAAAAGCTTGGTCGTGTAGGCATTCGTAGTGAC
ATAGGCAGTCTCCTCCGCGACGTTGCTGTACTCCTCGTCTCCCTCGTCTT
CCTCGTCGTCCTCGTCGCCCTCGCTATCCTCATCTGCTTCTTCGGTAGTA
TCGTTGGCGTGCTCGTGTACTTCCTCTTCCTCTTCGTAATCTGCGTCCTG
CTTGTCAGCCTGGTATTCATCTTCCAAATCCTCCTCTTCCTGGTGCTGAA
ACGGTTGCAGTGCGGCAGCAGTTGGCAACTTACTCATCTCGCTGATTATC
TTCTCGCTGCCTTCTTCTCCAAAGCTATTGCCATCTAGATTCAAGATGCG
TAGCTTGGGCTTGTTTCCCATAGCATTC
BS04659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9999-PA | 1791 | RanGap-RA | 930..1791 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RC | 2144 | CG9999-RC | 1204..2066 | 878..16 | 4315 | 100 | Minus |
| RanGAP-RB | 2008 | CG9999-RB | 1068..1930 | 878..16 | 4315 | 100 | Minus |
| RanGAP-RA | 2401 | CG9999-RA | 1461..2323 | 878..16 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19446244..19446598 | 878..524 | 1775 | 100 | Minus |
| 2L | 23513712 | 2L | 19446909..19447239 | 346..16 | 1655 | 100 | Minus |
| 2L | 23513712 | 2L | 19446674..19446852 | 525..347 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:21 has no hits.
BS04659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:12 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9999-PA | 930..1791 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:29 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9999-PA | 930..1791 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:11 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 1461..2330 | 10..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:43 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 1461..2330 | 10..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:43 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19446244..19446598 | 524..878 | 100 | -> | Minus |
| 2L | 19446676..19446852 | 347..523 | 100 | -> | Minus |
| 2L | 19446909..19447246 | 10..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:11 Download gff for
BS04659.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19446244..19446598 | 524..878 | 100 | -> | Minus |
| arm_2L | 19446676..19446852 | 347..523 | 100 | -> | Minus |
| arm_2L | 19446909..19447246 | 10..346 | 99 | | Minus |
BS04659.5prime Sequence
874 bp (762 high quality bases) assembled on 2005-12-02
> BS04659.5prime
GAAGTTATCAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCC
AACTGGGCCAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGG
AACACAGCTGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGAC
CACCGTGCACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCG
CCAAGGCGATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCG
CTGTGGAAGAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGC
ACTCAAGCACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAG
TCCTGGATCTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTA
GAGGAGTTACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCTGCT
GTGCAATTGTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCCCGGGCTC
TGATCGATCTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCTCCAGCTG
CGTGTGTTCATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTGCTACGGA
AATGGCAACCGCATTCCAAACCCTCAAGACCTTCGAGGAGATTGTTCTGG
AGCAAAACTCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGAATCCTTC
AAGCATAATCCTCATCTACGAGTGCTAAACATGAACGACAATACTCTAAA
GTCCGAGGGAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTGCCACTGC
TGCGTGAAATGAGCTTTGGAGACTGCCTGATCAAAACTAATGGCGCCCTA
CACTTCGGTGAGGCTCTGGAGAGA
BS04659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9999-PA | 1791 | RanGap-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RB | 2008 | CG9999-RB | 138..996 | 16..874 | 4250 | 99.8 | Plus |
| RanGAP-RA | 2401 | CG9999-RA | 531..1389 | 16..874 | 4250 | 99.8 | Plus |
| RanGAP-RC | 2144 | CG9999-RC | 298..1132 | 40..874 | 4130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19445344..19446027 | 116..799 | 3420 | 100 | Plus |
| 2L | 23513712 | 2L | 19445185..19445285 | 16..116 | 505 | 100 | Plus |
| 2L | 23513712 | 2L | 19446097..19446172 | 799..874 | 335 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:00:25 has no hits.
BS04659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:13 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9999-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:31 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9999-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:25:44 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 525..1388 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:38:57 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 525..1388 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:38:57 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19445179..19445285 | 10..116 | 97 | -> | Plus |
| 2L | 19445345..19446026 | 117..798 | 100 | -> | Plus |
| 2L | 19446097..19446171 | 799..873 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:25:44 Download gff for
BS04659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19445179..19445285 | 10..116 | 97 | -> | Plus |
| arm_2L | 19445345..19446026 | 117..798 | 100 | -> | Plus |
| arm_2L | 19446097..19446171 | 799..873 | 97 | | Plus |
BS04659.complete Sequence
1823 bp assembled on 2008-01-02
GenBank Submission: FJ634994
> BS04659.complete
GAAGTTATCAGTCGACATGTCCACCTTTAACTTCGCCAGCATGGCCGCCC
AACTGGGCCAGGAGCAGGGAATATCATTCGAGAACAAGGTGCTTTCCTGG
AACACAGCTGCCGATGTCCAGGATGTGGTGGATGCCCTTAACAAACAGAC
CACCGTGCACTATCTGAATCTGGACGGGAACACACTGGGCGTTGAGGCCG
CCAAGGCGATTGGTGAGGGTCTGAAGCGTCATCCAGAGTTTCGGAAGGCG
CTGTGGAAGAACATGTTTACTGGTCGTCTCATATCGGAGATTCCGGAGGC
ACTCAAGCACCTGGGAGCCGCGCTAATTGTCGCGGGCGCCAAACTGACAG
TCCTGGATCTCAGCGACAATGCCTTAGGACCGAATGGCATGCGAGGCTTA
GAGGAGTTACTGCGATCCCCGGTCTGCTACTCGCTGCAGGAGCTGCTGCT
GTGCAATTGTGGCCTTGGTCCCGAGGGCGGTAGTATGCTGTCCCGGGCTC
TGATCGATCTGCATGCCAATGCCAACAAGGCGGGCTTCCCGCTCCAGCTG
CGTGTGTTCATAGGTTCGCGCAATCGTCTCGAGGATGCCGGTGCTACGGA
AATGGCAACCGCATTCCAAACCCTCAAGACCTTCGAGGAGATTGTTCTGG
AGCAAAACTCCATTTACATCGAAGGCGTCGAGGCCCTTGCCGAATCCTTC
AAGCATAATCCTCATCTACGAGTGCTAAACATGAACGACAATACTCTAAA
GTCCGAGGGAGCTGAAAAAATAGCTGAGGCTCTTCCCTTCTTGCCACTGC
TGCGTGAAATGAGCTTTGGAGACTGCCTGATCAAAACTAATGGCGCCTAC
CACTTCGGTGAGGCTCTGGAGAGAGGAAACGAACGACTGGAAGTTATCGA
CTTAGGTTTTAACGAAATCAACAGCGACGGCGGCTTGGTGTTGGTGAATG
CTATGGGAAACAAGCCCAAGCTACGCATCTTGAATCTAGATGGCAATAGC
TTTGGAGAAGAAGGCAGCGAGAAGATAATCAGCGAGATGAGTAAGTTGCC
AACTGCTGCCGCACTGCAACCGTTTCAGCACCAGGAAGAGGAGGATTTGG
AAGATGAATACCAGGCTGACAAGCAGGACGCAGATTACGAAGAGGAAGAG
GAAGTACACGAGCACGCCAACGATACTACCGAAGAAGCAGATGAGGATAG
CGAGGGCGACGAGGACGACGAGGAAGACGAGGGAGACGAGGAGTACAGCA
ACGTCGCGGAGGAGACTGCCTATGTCACTACGAATGCCTACACGACCAAG
CTTTTTAACGACACAACCAACTCGATGGCCAGCGAAACTTTTGCGGTCGC
GAACAAGACGATCAGCCAAAAATGCACTCCAGAGAAGTTCTGTTTGAGCC
AGAAACCCTGCTCCCAGGAAGATTTCGATTCGCTAGATATGGATAACAAA
CTTGAGGCTTTGCAGTCGATTGTCAACCAATTCACCGGCGACAACCATTT
GCTACTGCTCGTCTTCACCACCTTGAAGTGCGCGCATTTGTCGCAATCCT
CGAAAGCTGCGTTGGATCTGGCCGTCTCCTTGTACCAGGCCACCTTTGAC
TATGCCATCAAGACAAAGCAGGAGACACGTGTACTCAACTATGTACTGAT
GCAGCTCCGTTTGTTGCCCTGCAAGGAGGTATTCCATTCGGACTACGATG
TCAAGAACTGTCGATTTGCTCTTCGCGAGGCTCTCAAGCAACCAACGTTT
GCCAACGACAACATTAAGAATTCCTTTAAGACTTTCCTGGAGGGTGCGGA
GTCGTAAAAGCTTTCTAGACCAT
BS04659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RB | 1791 | CG9999-PB | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| RanGAP-RA | 1791 | CG9999-PA | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| RanGAP-RC | 1767 | CG9999-PC | 1..1767 | 41..1807 | 8835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-RB | 2008 | CG9999-RB | 138..1930 | 16..1808 | 8965 | 100 | Plus |
| RanGAP-RA | 2401 | CG9999-RA | 531..2323 | 16..1808 | 8965 | 100 | Plus |
| RanGAP-RC | 2144 | CG9999-RC | 298..2066 | 40..1808 | 8845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19445344..19446027 | 116..799 | 3420 | 100 | Plus |
| 2L | 23513712 | 2L | 19446097..19446598 | 799..1300 | 2510 | 100 | Plus |
| 2L | 23513712 | 2L | 19446909..19447239 | 1478..1808 | 1655 | 100 | Plus |
| 2L | 23513712 | 2L | 19446674..19446852 | 1299..1477 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 19445185..19445285 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:35:33 has no hits.
BS04659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:16 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGap-RA | 1..1791 | 17..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:30 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGap-RA | 450..2238 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:46 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 532..2320 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:17 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGap-RA | 443..2248 | 10..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:46 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RanGAP-RA | 532..2320 | 17..1805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:46 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19446676..19446852 | 1301..1477 | 100 | -> | Plus |
| 2L | 19446909..19447236 | 1478..1805 | 100 | | Plus |
| 2L | 19445186..19445285 | 17..116 | 100 | -> | Plus |
| 2L | 19445345..19446026 | 117..798 | 100 | -> | Plus |
| 2L | 19446097..19446598 | 799..1300 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:46 Download gff for
BS04659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19445186..19445285 | 17..116 | 100 | -> | Plus |
| arm_2L | 19445345..19446026 | 117..798 | 100 | -> | Plus |
| arm_2L | 19446097..19446598 | 799..1300 | 100 | -> | Plus |
| arm_2L | 19446676..19446852 | 1301..1477 | 100 | -> | Plus |
| arm_2L | 19446909..19447236 | 1478..1805 | 100 | | Plus |
BS04659.pep Sequence
Translation from 16 to 1806
> BS04659.pep
MSTFNFASMAAQLGQEQGISFENKVLSWNTAADVQDVVDALNKQTTVHYL
NLDGNTLGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLG
AALIVAGAKLTVLDLSDNALGPNGMRGLEELLRSPVCYSLQELLLCNCGL
GPEGGSMLSRALIDLHANANKAGFPLQLRVFIGSRNRLEDAGATEMATAF
QTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRVLNMNDNTLKSEGAE
KIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEVIDLGFNE
INSDGGLVLVNAMGNKPKLRILNLDGNSFGEEGSEKIISEMSKLPTAAAL
QPFQHQEEEDLEDEYQADKQDADYEEEEEVHEHANDTTEEADEDSEGDED
DEEDEGDEEYSNVAEETAYVTTNAYTTKLFNDTTNSMASETFAVANKTIS
QKCTPEKFCLSQKPCSQEDFDSLDMDNKLEALQSIVNQFTGDNHLLLLVF
TTLKCAHLSQSSKAALDLAVSLYQATFDYAIKTKQETRVLNYVLMQLRLL
PCKEVFHSDYDVKNCRFALREALKQPTFANDNIKNSFKTFLEGAES*
BS04659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RanGAP-PB | 596 | CG9999-PB | 1..596 | 1..596 | 3056 | 100 | Plus |
| RanGAP-PA | 596 | CG9999-PA | 1..596 | 1..596 | 3056 | 100 | Plus |
| RanGAP-PC | 588 | CG9999-PC | 1..588 | 9..596 | 3016 | 100 | Plus |
