Clone BS04662 Report

Search the DGRC for BS04662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG1227-RA
Protein status:BS04662.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04662.3prime Sequence

924 bp (862 high quality bases) assembled on 2005-12-02

> BS04662.3prime
ATGGTCTAGAAAGCTTCTACAAGCGACCCTCCAGTTTCTGTATCAGATCG
TGGGTCCTTTCGATAACACTAAACACGAATGGCCGTTCCATTGGATCTGT
TCGCAGCATGTACTTAATTAATTCGTGCATGTCCTCTGTGTAAATTGAAT
CCTCTGGAATGTTTATGTTCCCACTGAGCACAGCCAAAGCCACGCTGTCA
CCTCGCTCGTAGATGGGATCGTAGGGTGAATTAAAGTAGCACATTGCATA
GAGCACACAGCCAAGACTCCATATGTCAGTGCGCTCGTCAATTGTGCAAT
ATGTTTTCACGGTAAATAACTCTGGAGCCCGGTAGACAATGGAGCTCCTC
TCCTCGGCTTCGTCCTGCAAGCGCTGAGCATCCGTCTGGCCCACAATCTG
CAGTCGGGCTTCTGTCATTGACCCGAGATCCACAATAATTGGCTCAAAAG
AGTCCGACAGGCAGATGTTGGCCGTTTTTAGATCTCGGTGGGCCAGAGGC
ACCGGCATTGCCTCGTGGATGGCCTTCAATCCCTCGCAGACGCCCAGAAA
GATTTGCAGGATCTGGGCCTCGGGCATGTGGTCCTGTTTCCGCGATCGCA
GCTGAAGGTGGTCCGCAAGAGATCCGTGCTTGTAATAGGGAAGCACAATG
AACAAGGTGCTCGTTGTGTTTATAACTATGTCCGCCTGGCCCTTCAGCTC
GTAATCCACTACCCGGATCACGTTTTCCGAGTCAATTTTTCGACAGTTTT
CGATTTCTCGCAGAGCTATATTCTGATCATCGATGCTGTGGCAGGTGATG
CGCTTTATCGCATAGCTACGTCGCGTGGAGGCGTTTTCCCCAAGGTCGAT
TAGACTGAAGCCCCCCGTCGCCAGCCTTTCGCGGATTGTGTATCGAGATC
CGTTTATGTTCAGGGTCTCCTTGC

BS04662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PA 963 CG1227-RA 56..963 924..17 4540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 133..1040 924..17 4540 100 Minus
CG1227-RA 1415 CG1227-RA 374..1281 924..17 4540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 269..864 2980 100 Plus
3R 32079331 3R 7248456..7248592 133..269 685 100 Plus
3R 32079331 3R 7248285..7248403 17..135 595 100 Plus
3R 32079331 3R 7249304..7249365 863..924 310 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:08:39 has no hits.

BS04662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:16 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 56..963 17..924 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:35 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 56..963 17..924 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:06 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 374..1283 12..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:58 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 374..1283 12..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:58 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7248283..7248401 12..133 97 <- Plus
3R 7248457..7248591 134..268 100 <- Plus
3R 7248650..7249244 269..863 100 <- Plus
3R 7249305..7249365 864..924 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:06 Download gff for BS04662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3075027..3075087 864..924 100   Plus
arm_3R 3074005..3074123 12..133 97 <- Plus
arm_3R 3074179..3074313 134..268 100 <- Plus
arm_3R 3074372..3074966 269..863 100 <- Plus

BS04662.5prime Sequence

951 bp (821 high quality bases) assembled on 2005-11-29

> BS04662.5prime
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
TTTACACAGAGGACATGCACGAATTANTTAAGTACATGCTGCGAACAGAT
CCAATGGAACGGCCATTCGTGTTTAGTGGTATCGAAAGGACCCACGATCT
G

BS04662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PA 963 CG1227-RA 1..834 17..850 4170 100 Plus
CG1227-PA 963 CG1227-RA 835..936 850..951 466 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 78..1013 17..951 4629 99.7 Plus
CG1227-RA 1415 CG1227-RA 319..1254 17..951 4629 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 727..132 2980 100 Minus
3R 32079331 3R 7248456..7248592 862..727 635 99.3 Minus
3R 32079331 3R 7249304..7249420 133..17 585 100 Minus
3R 32079331 3R 7248312..7248403 951..860 434 97.8 Minus
Blast to na_te.dros performed on 2015-02-12 20:13:21 has no hits.

BS04662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:19 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..936 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:36 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-PA 1..936 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:28 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 313..1254 10..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:28 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 313..1254 10..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:28 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7248312..7248401 862..951 97 <- Minus
3R 7248457..7248591 728..861 99 <- Minus
3R 7248650..7249244 133..727 100 <- Minus
3R 7249305..7249426 10..132 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:28 Download gff for BS04662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3074034..3074123 862..951 97 <- Minus
arm_3R 3074179..3074313 728..861 99 <- Minus
arm_3R 3074372..3074966 133..727 100 <- Minus
arm_3R 3075027..3075148 10..132 96   Minus

BS04662.complete Sequence

995 bp (995 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634995

> BS04662.complete
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
ATTTACACAGAGGACATGCACGAATTAATTAAGTACATGCTGCGAACAGA
TCCAATGGAACGGCCATTCGTGTTTAGTGTTATCGAAAGGACCCACGATC
TGATACAGAAACTGGAGGGTCGCTTGTAGAAGCTTTCTAGACCAT

BS04662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 963 CG1227-PB 1..963 17..979 4815 100 Plus
CG1227-RA 963 CG1227-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-RB 1174 CG1227-RB 78..1040 17..979 4815 100 Plus
CG1227-RA 1415 CG1227-RA 319..1281 17..979 4815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7248650..7249245 727..132 2980 100 Minus
3R 32079331 3R 7248456..7248592 863..727 685 100 Minus
3R 32079331 3R 7248285..7248403 979..861 595 100 Minus
3R 32079331 3R 7249304..7249420 133..17 585 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:24 has no hits.

BS04662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:34 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 1..963 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:51 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 310..1280 10..984 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:33 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 319..1281 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:35 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 310..1280 10..984 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:23 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
CG1227-RA 319..1281 17..979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:23 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7248285..7248401 863..979 100 <- Minus
3R 7248457..7248591 728..862 100 <- Minus
3R 7248650..7249244 133..727 100 <- Minus
3R 7249305..7249420 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:33 Download gff for BS04662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3074007..3074123 863..979 100 <- Minus
arm_3R 3074179..3074313 728..862 100 <- Minus
arm_3R 3074372..3074966 133..727 100 <- Minus
arm_3R 3075027..3075142 17..132 100   Minus

BS04662.pep Sequence

Translation from 16 to 978

> BS04662.pep
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRL*

BS04662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1227-PB 320 CG1227-PB 1..320 1..320 1657 100 Plus
CG1227-PA 320 CG1227-PA 1..320 1..320 1657 100 Plus
Nak-PC 698 CG10637-PC 47..312 31..307 379 33 Plus
Nak-PE 708 CG10637-PE 47..312 31..307 379 33 Plus
Nak-PD 1488 CG10637-PD 47..312 31..307 379 33 Plus