Clone Sequence Records
BS04662.3prime Sequence
924 bp (862 high quality bases) assembled on 2005-12-02
> BS04662.3prime
ATGGTCTAGAAAGCTTCTACAAGCGACCCTCCAGTTTCTGTATCAGATCG
TGGGTCCTTTCGATAACACTAAACACGAATGGCCGTTCCATTGGATCTGT
TCGCAGCATGTACTTAATTAATTCGTGCATGTCCTCTGTGTAAATTGAAT
CCTCTGGAATGTTTATGTTCCCACTGAGCACAGCCAAAGCCACGCTGTCA
CCTCGCTCGTAGATGGGATCGTAGGGTGAATTAAAGTAGCACATTGCATA
GAGCACACAGCCAAGACTCCATATGTCAGTGCGCTCGTCAATTGTGCAAT
ATGTTTTCACGGTAAATAACTCTGGAGCCCGGTAGACAATGGAGCTCCTC
TCCTCGGCTTCGTCCTGCAAGCGCTGAGCATCCGTCTGGCCCACAATCTG
CAGTCGGGCTTCTGTCATTGACCCGAGATCCACAATAATTGGCTCAAAAG
AGTCCGACAGGCAGATGTTGGCCGTTTTTAGATCTCGGTGGGCCAGAGGC
ACCGGCATTGCCTCGTGGATGGCCTTCAATCCCTCGCAGACGCCCAGAAA
GATTTGCAGGATCTGGGCCTCGGGCATGTGGTCCTGTTTCCGCGATCGCA
GCTGAAGGTGGTCCGCAAGAGATCCGTGCTTGTAATAGGGAAGCACAATG
AACAAGGTGCTCGTTGTGTTTATAACTATGTCCGCCTGGCCCTTCAGCTC
GTAATCCACTACCCGGATCACGTTTTCCGAGTCAATTTTTCGACAGTTTT
CGATTTCTCGCAGAGCTATATTCTGATCATCGATGCTGTGGCAGGTGATG
CGCTTTATCGCATAGCTACGTCGCGTGGAGGCGTTTTCCCCAAGGTCGAT
TAGACTGAAGCCCCCCGTCGCCAGCCTTTCGCGGATTGTGTATCGAGATC
CGTTTATGTTCAGGGTCTCCTTGC
BS04662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PA | 963 | CG1227-RA | 56..963 | 924..17 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 133..1040 | 924..17 | 4540 | 100 | Minus |
CG1227-RA | 1415 | CG1227-RA | 374..1281 | 924..17 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 269..864 | 2980 | 100 | Plus |
3R | 32079331 | 3R | 7248456..7248592 | 133..269 | 685 | 100 | Plus |
3R | 32079331 | 3R | 7248285..7248403 | 17..135 | 595 | 100 | Plus |
3R | 32079331 | 3R | 7249304..7249365 | 863..924 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:08:39 has no hits.
BS04662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:16 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 56..963 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:35 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 56..963 | 17..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:06 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 374..1283 | 12..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:58 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 374..1283 | 12..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:58 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7248283..7248401 | 12..133 | 97 | <- | Plus |
3R | 7248457..7248591 | 134..268 | 100 | <- | Plus |
3R | 7248650..7249244 | 269..863 | 100 | <- | Plus |
3R | 7249305..7249365 | 864..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:06 Download gff for
BS04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3075027..3075087 | 864..924 | 100 | | Plus |
arm_3R | 3074005..3074123 | 12..133 | 97 | <- | Plus |
arm_3R | 3074179..3074313 | 134..268 | 100 | <- | Plus |
arm_3R | 3074372..3074966 | 269..863 | 100 | <- | Plus |
BS04662.5prime Sequence
951 bp (821 high quality bases) assembled on 2005-11-29
> BS04662.5prime
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
TTTACACAGAGGACATGCACGAATTANTTAAGTACATGCTGCGAACAGAT
CCAATGGAACGGCCATTCGTGTTTAGTGGTATCGAAAGGACCCACGATCT
G
BS04662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PA | 963 | CG1227-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
CG1227-PA | 963 | CG1227-RA | 835..936 | 850..951 | 466 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 78..1013 | 17..951 | 4629 | 99.7 | Plus |
CG1227-RA | 1415 | CG1227-RA | 319..1254 | 17..951 | 4629 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 727..132 | 2980 | 100 | Minus |
3R | 32079331 | 3R | 7248456..7248592 | 862..727 | 635 | 99.3 | Minus |
3R | 32079331 | 3R | 7249304..7249420 | 133..17 | 585 | 100 | Minus |
3R | 32079331 | 3R | 7248312..7248403 | 951..860 | 434 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:13:21 has no hits.
BS04662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:19 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:36 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-PA | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:28 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 313..1254 | 10..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:28 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 313..1254 | 10..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:28 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7248312..7248401 | 862..951 | 97 | <- | Minus |
3R | 7248457..7248591 | 728..861 | 99 | <- | Minus |
3R | 7248650..7249244 | 133..727 | 100 | <- | Minus |
3R | 7249305..7249426 | 10..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:28 Download gff for
BS04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3074034..3074123 | 862..951 | 97 | <- | Minus |
arm_3R | 3074179..3074313 | 728..861 | 99 | <- | Minus |
arm_3R | 3074372..3074966 | 133..727 | 100 | <- | Minus |
arm_3R | 3075027..3075148 | 10..132 | 96 | | Minus |
BS04662.complete Sequence
995 bp (995 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634995
> BS04662.complete
GAAGTTATCAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAAC
GCGGCTGCCTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCT
CGATACACAATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGA
CCTTGGGGAAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCA
CCTGCCACAGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAAC
TGTCGAAAAATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCT
GAAGGGCCAGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTG
TGCTTCCCTATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGA
TCGCGGAAACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCT
GGGCGTCTGCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTC
TGGCCCACCGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTT
GAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGAT
TGTGGGCCAGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGA
GCTCCATTGTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGC
ACAATTGACGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGC
AATGTGCTACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACA
GCGTGGCTTTGGCTGTGCTCAGTGGGAACATAAACATTCCAGAGGATTCA
ATTTACACAGAGGACATGCACGAATTAATTAAGTACATGCTGCGAACAGA
TCCAATGGAACGGCCATTCGTGTTTAGTGTTATCGAAAGGACCCACGATC
TGATACAGAAACTGGAGGGTCGCTTGTAGAAGCTTTCTAGACCAT
BS04662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 963 | CG1227-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
CG1227-RA | 963 | CG1227-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-RB | 1174 | CG1227-RB | 78..1040 | 17..979 | 4815 | 100 | Plus |
CG1227-RA | 1415 | CG1227-RA | 319..1281 | 17..979 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7248650..7249245 | 727..132 | 2980 | 100 | Minus |
3R | 32079331 | 3R | 7248456..7248592 | 863..727 | 685 | 100 | Minus |
3R | 32079331 | 3R | 7248285..7248403 | 979..861 | 595 | 100 | Minus |
3R | 32079331 | 3R | 7249304..7249420 | 133..17 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:24 has no hits.
BS04662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:34 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:51 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 310..1280 | 10..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:33 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 319..1281 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:35 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 310..1280 | 10..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:23 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1227-RA | 319..1281 | 17..979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:23 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7248285..7248401 | 863..979 | 100 | <- | Minus |
3R | 7248457..7248591 | 728..862 | 100 | <- | Minus |
3R | 7248650..7249244 | 133..727 | 100 | <- | Minus |
3R | 7249305..7249420 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:33 Download gff for
BS04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3074007..3074123 | 863..979 | 100 | <- | Minus |
arm_3R | 3074179..3074313 | 728..862 | 100 | <- | Minus |
arm_3R | 3074372..3074966 | 133..727 | 100 | <- | Minus |
arm_3R | 3075027..3075142 | 17..132 | 100 | | Minus |
BS04662.pep Sequence
Translation from 16 to 978
> BS04662.pep
MQSIGWTLIMKRGCLFSCRKETLNINGSRYTIRERLATGGFSLIDLGENA
STRRSYAIKRITCHSIDDQNIALREIENCRKIDSENVIRVVDYELKGQAD
IVINTTSTLFIVLPYYKHGSLADHLQLRSRKQDHMPEAQILQIFLGVCEG
LKAIHEAMPVPLAHRDLKTANICLSDSFEPIIVDLGSMTEARLQIVGQTD
AQRLQDEAEERSSIVYRAPELFTVKTYCTIDERTDIWSLGCVLYAMCYFN
SPYDPIYERGDSVALAVLSGNINIPEDSIYTEDMHELIKYMLRTDPMERP
FVFSVIERTHDLIQKLEGRL*
BS04662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1227-PB | 320 | CG1227-PB | 1..320 | 1..320 | 1657 | 100 | Plus |
CG1227-PA | 320 | CG1227-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
Nak-PC | 698 | CG10637-PC | 47..312 | 31..307 | 379 | 33 | Plus |
Nak-PE | 708 | CG10637-PE | 47..312 | 31..307 | 379 | 33 | Plus |
Nak-PD | 1488 | CG10637-PD | 47..312 | 31..307 | 379 | 33 | Plus |