Clone BS04663 Report

Search the DGRC for BS04663

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG3876-RA
Protein status:BS04663.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04663.3prime Sequence

798 bp (797 high quality bases) assembled on 2005-12-02

> BS04663.3prime
ATGGTCTAGAAAGCTTCTACGATTGTGATAGGTAGAGACCGTGCTTGGCA
TCACACACCACATTCAGGGCGTAGAAGTCCCAGTAGGAGGTCATGTGGAA
CCCCATGTTGGTCAGCACCACGATGTACTCGAACAACGCGAAGAAAGTAT
AGACTCCCGCCTCGCAATGCGAGTTGTGCCTCACGAAGCAGTATCCTGCC
AAGCCAAAGGCGATCACATTCACCAAGAACAGATTTCTCTTGTACCTCAG
CGACTTCTCCTCGTGCGGCAAGAGCACGGTCTTCTGTATATTCCTGTTCA
GCAGGTAGGAAACCAGCATATAGCACTCGGAACACGCAATGAACACCACA
AATGCGTTTCTGTGGGTCTCGTAATGATCCGCAGAGGTCCAAAACGACAA
GCAGAAGAGGGCCAGATCCTCCACGACGTTCAAGAAGCAGGCCAGGATGC
CCAGCAATCTTCTGCTCCGGCGGATGTGTTCCCGATAGTGCTCCAAGTAG
ATTTTGGCAACTGCCAAACGGAGTGGTAAATGCAGAAATATGGCCAGTCT
CCAGACGGTTTTTTGGGGCTCATAGTTCCCAATGGCCGCCGAGACGGAGG
GCAGATAGTTGGTCACATCGCAGTGGGTGTAGGTGCTCCTAACGAAGTCA
AAGGTCAGAGACCAAATCACGCAGAAGAAGAAGCCTCCCAGGGGCAAACT
AAGAGCCACCAGTGCCAGTCGCGCAAAGGGAAGCCGGAAGAGGACGCTTT
TGGGATCACTGAAGCGCTCGTAAGTAGGCAGCATGTCGACTGATAACT

BS04663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 768 CG3876-RA 1..768 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..943 784..16 3845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 154..784 3155 100 Plus
2L 23513712 2L 818506..818645 16..155 700 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:07:03 has no hits.

BS04663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:20 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:37 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:14:48 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..943 16..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:57:14 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..943 16..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:57:14 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 818506..818643 16..153 100 <- Plus
2L 818704..819339 154..790 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:14:48 Download gff for BS04663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818506..818643 16..153 100 <- Plus
arm_2L 818704..819339 154..790 99   Plus

BS04663.5prime Sequence

798 bp (750 high quality bases) assembled on 2005-11-29

> BS04663.5prime
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGTAGAAGCTTTCTAGACC

BS04663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 768 CG3876-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..943 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 647..17 3155 100 Minus
2L 23513712 2L 818506..818645 785..646 700 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:16 has no hits.

BS04663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:21 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:39 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:06 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..943 11..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:26 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 170..943 11..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:26 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 818506..818643 648..785 100 <- Minus
2L 818704..819339 11..647 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:06 Download gff for BS04663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818506..818643 648..785 100 <- Minus
arm_2L 818704..819339 11..647 99   Minus

BS04663.complete Sequence

800 bp (800 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634996

> BS04663.complete
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGTAGAAGCTTTCTAGACCAT

BS04663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 768 CG3876-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-RA 1370 CG3876-RA 175..943 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 818704..819334 647..17 3155 100 Minus
2L 23513712 2L 818506..818645 785..646 700 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:53:20 has no hits.

BS04663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:18 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:20 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 154..927 11..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:53 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 175..942 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:18 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 154..927 11..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:11 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
CG3876-RA 175..942 17..784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:11 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
2L 818507..818643 648..784 100 <- Minus
2L 818704..819334 17..647 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:53 Download gff for BS04663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 818507..818643 648..784 100 <- Minus
arm_2L 818704..819334 17..647 100   Minus

BS04663.pep Sequence

Translation from 16 to 783

> BS04663.pep
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQS*

BS04663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3876-PA 255 CG3876-PA 1..255 1..255 1360 100 Plus
CG7990-PA 325 CG7990-PA 75..299 20..237 336 33.5 Plus
CG15880-PA 263 CG15880-PA 25..262 16..254 214 28.8 Plus