Clone Sequence Records
BS04663.3prime Sequence
798 bp (797 high quality bases) assembled on 2005-12-02
> BS04663.3prime
ATGGTCTAGAAAGCTTCTACGATTGTGATAGGTAGAGACCGTGCTTGGCA
TCACACACCACATTCAGGGCGTAGAAGTCCCAGTAGGAGGTCATGTGGAA
CCCCATGTTGGTCAGCACCACGATGTACTCGAACAACGCGAAGAAAGTAT
AGACTCCCGCCTCGCAATGCGAGTTGTGCCTCACGAAGCAGTATCCTGCC
AAGCCAAAGGCGATCACATTCACCAAGAACAGATTTCTCTTGTACCTCAG
CGACTTCTCCTCGTGCGGCAAGAGCACGGTCTTCTGTATATTCCTGTTCA
GCAGGTAGGAAACCAGCATATAGCACTCGGAACACGCAATGAACACCACA
AATGCGTTTCTGTGGGTCTCGTAATGATCCGCAGAGGTCCAAAACGACAA
GCAGAAGAGGGCCAGATCCTCCACGACGTTCAAGAAGCAGGCCAGGATGC
CCAGCAATCTTCTGCTCCGGCGGATGTGTTCCCGATAGTGCTCCAAGTAG
ATTTTGGCAACTGCCAAACGGAGTGGTAAATGCAGAAATATGGCCAGTCT
CCAGACGGTTTTTTGGGGCTCATAGTTCCCAATGGCCGCCGAGACGGAGG
GCAGATAGTTGGTCACATCGCAGTGGGTGTAGGTGCTCCTAACGAAGTCA
AAGGTCAGAGACCAAATCACGCAGAAGAAGAAGCCTCCCAGGGGCAAACT
AAGAGCCACCAGTGCCAGTCGCGCAAAGGGAAGCCGGAAGAGGACGCTTT
TGGGATCACTGAAGCGCTCGTAAGTAGGCAGCATGTCGACTGATAACT
BS04663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 768 | CG3876-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..943 | 784..16 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 154..784 | 3155 | 100 | Plus |
2L | 23513712 | 2L | 818506..818645 | 16..155 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:07:03 has no hits.
BS04663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:20 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:37 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:14:48 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..943 | 16..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:57:14 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..943 | 16..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:57:14 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818506..818643 | 16..153 | 100 | <- | Plus |
2L | 818704..819339 | 154..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:14:48 Download gff for
BS04663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818506..818643 | 16..153 | 100 | <- | Plus |
arm_2L | 818704..819339 | 154..790 | 99 | | Plus |
BS04663.5prime Sequence
798 bp (750 high quality bases) assembled on 2005-11-29
> BS04663.5prime
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGTAGAAGCTTTCTAGACC
BS04663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 768 | CG3876-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..943 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 647..17 | 3155 | 100 | Minus |
2L | 23513712 | 2L | 818506..818645 | 785..646 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:29:16 has no hits.
BS04663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:21 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:39 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:06 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..943 | 11..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:26 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 170..943 | 11..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:26 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818506..818643 | 648..785 | 100 | <- | Minus |
2L | 818704..819339 | 11..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:06 Download gff for
BS04663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818506..818643 | 648..785 | 100 | <- | Minus |
arm_2L | 818704..819339 | 11..647 | 99 | | Minus |
BS04663.complete Sequence
800 bp (800 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634996
> BS04663.complete
GAAGTTATCAGTCGACATGCTGCCTACTTACGAGCGCTTCAGTGATCCCA
AAAGCGTCCTCTTCCGGCTTCCCTTTGCGCGACTGGCACTGGTGGCTCTT
AGTTTGCCCCTGGGAGGCTTCTTCTTCTGCGTGATTTGGTCTCTGACCTT
TGACTTCGTTAGGAGCACCTACACCCACTGCGATGTGACCAACTATCTGC
CCTCCGTCTCGGCGGCCATTGGGAACTATGAGCCCCAAAAAACCGTCTGG
AGACTGGCCATATTTCTGCATTTACCACTCCGTTTGGCAGTTGCCAAAAT
CTACTTGGAGCACTATCGGGAACACATCCGCCGGAGCAGAAGATTGCTGG
GCATCCTGGCCTGCTTCTTGAACGTCGTGGAGGATCTGGCCCTCTTCTGC
TTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATT
TGTGGTGTTCATTGCGTGTTCCGAGTGCTATATGCTGGTTTCCTACCTGC
TGAACAGGAATATACAGAAGACCGTGCTCTTGCCGCACGAGGAGAAGTCG
CTGAGGTACAAGAGAAATCTGTTCTTGGTGAATGTGATCGCCTTTGGCTT
GGCAGGATACTGCTTCGTGAGGCACAACTCGCATTGCGAGGCGGGAGTCT
ATACTTTCTTCGCGTTGTTCGAGTACATCGTGGTGCTGACCAACATGGGG
TTCCACATGACCTCCTACTGGGACTTCTACGCCCTGAATGTGGTGTGTGA
TGCCAAGCACGGTCTCTACCTATCACAATCGTAGAAGCTTTCTAGACCAT
BS04663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 768 | CG3876-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-RA | 1370 | CG3876-RA | 175..943 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 818704..819334 | 647..17 | 3155 | 100 | Minus |
2L | 23513712 | 2L | 818506..818645 | 785..646 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:20 has no hits.
BS04663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:18 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:20 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 154..927 | 11..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:53 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 175..942 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:18 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 154..927 | 11..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:11 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3876-RA | 175..942 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:11 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 818507..818643 | 648..784 | 100 | <- | Minus |
2L | 818704..819334 | 17..647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:53 Download gff for
BS04663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 818507..818643 | 648..784 | 100 | <- | Minus |
arm_2L | 818704..819334 | 17..647 | 100 | | Minus |
BS04663.pep Sequence
Translation from 16 to 783
> BS04663.pep
MLPTYERFSDPKSVLFRLPFARLALVALSLPLGGFFFCVIWSLTFDFVRS
TYTHCDVTNYLPSVSAAIGNYEPQKTVWRLAIFLHLPLRLAVAKIYLEHY
REHIRRSRRLLGILACFLNVVEDLALFCLSFWTSADHYETHRNAFVVFIA
CSECYMLVSYLLNRNIQKTVLLPHEEKSLRYKRNLFLVNVIAFGLAGYCF
VRHNSHCEAGVYTFFALFEYIVVLTNMGFHMTSYWDFYALNVVCDAKHGL
YLSQS*
BS04663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3876-PA | 255 | CG3876-PA | 1..255 | 1..255 | 1360 | 100 | Plus |
CG7990-PA | 325 | CG7990-PA | 75..299 | 20..237 | 336 | 33.5 | Plus |
CG15880-PA | 263 | CG15880-PA | 25..262 | 16..254 | 214 | 28.8 | Plus |