Clone BS04665 Report

Search the DGRC for BS04665

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRas85D-RA
Protein status:BS04665.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04665.3prime Sequence

600 bp (599 high quality bases) assembled on 2005-12-02

> BS04665.3prime
ATGGTCTAGAAAGCTTTTAGAGCATTTTACATTTAAATCTACGATTCGGC
TTGTTCATTTTGCGGCCCCTCCGCCCCTTGTTGTCCTTGTCCTTGCGGAT
TTCGCGCACCAGTGTGTAAAATGCATCGTCCACGCCCATGCGCGTCTTGG
CGGATGTCTCAATGTATGGAATGCCGTACTGTTTGGCCACCTCTCTTGCC
TGCTCGTTGTTAACGTTCCACGAGGCCAGATCACATTTGTTGCCCACCAG
CACCATGGGCACCTCTTCGGCATCCTTTACGCGCTTGATCTGCTCACGGT
AGGTGCCGATATCCTCGAAGGACTTCGCACTGTTGACGGCAAAGACCAGC
AGGAATCCCTCGCCAGTCCGCATATACTGATCCCGCATGGCCGAGTACTC
CTCTTGGCCGGCGGTGTCCAGGATGTCCAGCAGGCAGGTCTCTCCATCGA
TAACCACTTGCTTTCGGTAAGAGTCCTCGATTGTGGGGTCGTACTCGTCC
ACGAAATGGTTCTGGATTAGCTGGATGGTGAGCGCGGACTTGCCCACGCC
TCCGGCTCCAACGACGACCAGTTTGTATTCCGTCATGTCGACTGATAACT

BS04665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9375-PA 570 Ras85D-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ras85D-RA 1958 CG9375-RA 442..1012 586..16 2855 100 Minus
R-RC 2702 CG1956-RC 615..849 577..343 320 76.3 Minus
R-RB 2872 CG1956-RB 785..1019 577..343 320 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9511737..9511997 188..448 1305 100 Plus
3R 32079331 3R 9511507..9511683 16..192 885 100 Plus
3R 32079331 3R 9512153..9512291 448..586 695 100 Plus
3L 28110227 3L 1860968..1861202 343..577 320 75.7 Plus
3L 28110227 3L 4140054..4140142 420..332 205 82 Minus
2R 25286936 2R 16109166..16109231 369..434 195 86.4 Plus
Blast to na_te.dros performed on 2015-02-03 12:53:13 has no hits.

BS04665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:24 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9375-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:43 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9375-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:54:51 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 435..1012 16..594 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:15 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 435..1012 16..594 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:15 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9511507..9511681 16..190 100 <- Plus
3R 9511740..9511996 191..447 100 <- Plus
3R 9512153..9512298 448..594 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:54:51 Download gff for BS04665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5337229..5337403 16..190 100 <- Plus
arm_3R 5337462..5337718 191..447 100 <- Plus
arm_3R 5337875..5338020 448..594 97   Plus

BS04665.5prime Sequence

600 bp (599 high quality bases) assembled on 2005-11-29

> BS04665.5prime
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCTAAAAGCTTTCTAGACC

BS04665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9375-PA 570 Ras85D-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ras85D-RA 1958 CG9375-RA 442..1012 17..587 2855 100 Plus
R-RC 2702 CG1956-RC 615..849 26..260 320 76.3 Plus
R-RB 2872 CG1956-RB 785..1019 26..260 320 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9511737..9511997 415..155 1305 100 Minus
3R 32079331 3R 9511507..9511683 587..411 885 100 Minus
3R 32079331 3R 9512153..9512291 155..17 695 100 Minus
3L 28110227 3L 1860968..1861202 260..26 320 75.7 Minus
3L 28110227 3L 4140054..4140142 183..271 205 82 Plus
2R 25286936 2R 16109166..16109231 234..169 195 86.4 Minus
Blast to na_te.dros performed on 2015-02-11 15:40:38 has no hits.

BS04665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:26 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9375-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:45 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9375-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:27 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 435..1012 9..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:37 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 435..1012 9..587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:37 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9512153..9512298 9..155 97   Minus
3R 9511507..9511681 413..587 100 <- Minus
3R 9511740..9511996 156..412 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:27 Download gff for BS04665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5337229..5337403 413..587 100 <- Minus
arm_3R 5337462..5337718 156..412 100 <- Minus
arm_3R 5337875..5338020 9..155 97   Minus

BS04665.complete Sequence

602 bp (602 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634997

> BS04665.complete
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCTAAAAGCTTTCTAGACC
AT

BS04665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ras85D-RA 570 CG9375-PA 1..570 17..586 2850 100 Plus
R-RC 555 CG1956-PC 10..244 26..260 320 75.7 Plus
R-RB 555 CG1956-PB 10..244 26..260 320 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ras85D-RA 1958 CG9375-RA 442..1012 17..587 2855 100 Plus
R-RC 2702 CG1956-RC 615..849 26..260 320 75.7 Plus
R-RB 2872 CG1956-RB 785..1019 26..260 320 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9511737..9511997 415..155 1305 100 Minus
3R 32079331 3R 9511507..9511683 587..411 885 100 Minus
3R 32079331 3R 9512153..9512291 155..17 695 100 Minus
3L 28110227 3L 1860968..1861202 260..26 320 75.7 Minus
3L 28110227 3L 4140054..4140142 183..271 205 82 Plus
2R 25286936 2R 16109166..16109231 234..169 195 86.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:30 has no hits.

BS04665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:42 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:52 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 432..1009 9..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:29 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 442..1009 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:42 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 432..1009 9..587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:29 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
Ras85D-RA 442..1009 17..584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:29 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9511510..9511681 413..584 100 <- Minus
3R 9511740..9511996 156..412 100 <- Minus
3R 9512153..9512291 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:29 Download gff for BS04665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5337232..5337403 413..584 100 <- Minus
arm_3R 5337462..5337718 156..412 100 <- Minus
arm_3R 5337875..5338013 17..155 100   Minus

BS04665.pep Sequence

Translation from 16 to 585

> BS04665.pep
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET
CLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI
KRVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRM
GVDDAFYTLVREIRKDKDNKGRRGRKMNKPNRRFKCKML*

BS04665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ras85D-PA 189 CG9375-PA 1..189 1..189 977 100 Plus
R-PC 184 CG1956-PC 1..178 1..182 515 54.1 Plus
R-PB 184 CG1956-PB 1..178 1..182 515 54.1 Plus
R-PA 184 CG1956-PA 1..178 1..182 515 54.1 Plus
Ras64B-PA 192 CG1167-PA 3..168 1..165 513 62.7 Plus