Clone Sequence Records
BS04665.3prime Sequence
600 bp (599 high quality bases) assembled on 2005-12-02
> BS04665.3prime
ATGGTCTAGAAAGCTTTTAGAGCATTTTACATTTAAATCTACGATTCGGC
TTGTTCATTTTGCGGCCCCTCCGCCCCTTGTTGTCCTTGTCCTTGCGGAT
TTCGCGCACCAGTGTGTAAAATGCATCGTCCACGCCCATGCGCGTCTTGG
CGGATGTCTCAATGTATGGAATGCCGTACTGTTTGGCCACCTCTCTTGCC
TGCTCGTTGTTAACGTTCCACGAGGCCAGATCACATTTGTTGCCCACCAG
CACCATGGGCACCTCTTCGGCATCCTTTACGCGCTTGATCTGCTCACGGT
AGGTGCCGATATCCTCGAAGGACTTCGCACTGTTGACGGCAAAGACCAGC
AGGAATCCCTCGCCAGTCCGCATATACTGATCCCGCATGGCCGAGTACTC
CTCTTGGCCGGCGGTGTCCAGGATGTCCAGCAGGCAGGTCTCTCCATCGA
TAACCACTTGCTTTCGGTAAGAGTCCTCGATTGTGGGGTCGTACTCGTCC
ACGAAATGGTTCTGGATTAGCTGGATGGTGAGCGCGGACTTGCCCACGCC
TCCGGCTCCAACGACGACCAGTTTGTATTCCGTCATGTCGACTGATAACT
BS04665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9375-PA | 570 | Ras85D-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1012 | 586..16 | 2855 | 100 | Minus |
R-RC | 2702 | CG1956-RC | 615..849 | 577..343 | 320 | 76.3 | Minus |
R-RB | 2872 | CG1956-RB | 785..1019 | 577..343 | 320 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 188..448 | 1305 | 100 | Plus |
3R | 32079331 | 3R | 9511507..9511683 | 16..192 | 885 | 100 | Plus |
3R | 32079331 | 3R | 9512153..9512291 | 448..586 | 695 | 100 | Plus |
3L | 28110227 | 3L | 1860968..1861202 | 343..577 | 320 | 75.7 | Plus |
3L | 28110227 | 3L | 4140054..4140142 | 420..332 | 205 | 82 | Minus |
2R | 25286936 | 2R | 16109166..16109231 | 369..434 | 195 | 86.4 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:53:13 has no hits.
BS04665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:24 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:43 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:54:51 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1012 | 16..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:45:15 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1012 | 16..594 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:45:15 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9511507..9511681 | 16..190 | 100 | <- | Plus |
3R | 9511740..9511996 | 191..447 | 100 | <- | Plus |
3R | 9512153..9512298 | 448..594 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:54:51 Download gff for
BS04665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337229..5337403 | 16..190 | 100 | <- | Plus |
arm_3R | 5337462..5337718 | 191..447 | 100 | <- | Plus |
arm_3R | 5337875..5338020 | 448..594 | 97 | | Plus |
BS04665.5prime Sequence
600 bp (599 high quality bases) assembled on 2005-11-29
> BS04665.5prime
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCTAAAAGCTTTCTAGACC
BS04665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9375-PA | 570 | Ras85D-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1012 | 17..587 | 2855 | 100 | Plus |
R-RC | 2702 | CG1956-RC | 615..849 | 26..260 | 320 | 76.3 | Plus |
R-RB | 2872 | CG1956-RB | 785..1019 | 26..260 | 320 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 415..155 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 9511507..9511683 | 587..411 | 885 | 100 | Minus |
3R | 32079331 | 3R | 9512153..9512291 | 155..17 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1860968..1861202 | 260..26 | 320 | 75.7 | Minus |
3L | 28110227 | 3L | 4140054..4140142 | 183..271 | 205 | 82 | Plus |
2R | 25286936 | 2R | 16109166..16109231 | 234..169 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:40:38 has no hits.
BS04665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:26 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:45 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9375-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:31:27 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1012 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:37 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 435..1012 | 9..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:37 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9512153..9512298 | 9..155 | 97 | | Minus |
3R | 9511507..9511681 | 413..587 | 100 | <- | Minus |
3R | 9511740..9511996 | 156..412 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:31:27 Download gff for
BS04665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337229..5337403 | 413..587 | 100 | <- | Minus |
arm_3R | 5337462..5337718 | 156..412 | 100 | <- | Minus |
arm_3R | 5337875..5338020 | 9..155 | 97 | | Minus |
BS04665.complete Sequence
602 bp (602 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634997
> BS04665.complete
GAAGTTATCAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCG
GAGGCGTGGGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTC
GTGGACGAGTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGT
TATCGATGGAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAG
AGGAGTACTCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTC
CTGCTGGTCTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCAC
CTACCGTGAGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGG
TGCTGGTGGGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAG
CAGGCAAGAGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATC
CGCCAAGACGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCG
AAATCCGCAAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAAC
AAGCCGAATCGTAGATTTAAATGTAAAATGCTCTAAAAGCTTTCTAGACC
AT
BS04665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 570 | CG9375-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
R-RC | 555 | CG1956-PC | 10..244 | 26..260 | 320 | 75.7 | Plus |
R-RB | 555 | CG1956-PB | 10..244 | 26..260 | 320 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-RA | 1958 | CG9375-RA | 442..1012 | 17..587 | 2855 | 100 | Plus |
R-RC | 2702 | CG1956-RC | 615..849 | 26..260 | 320 | 75.7 | Plus |
R-RB | 2872 | CG1956-RB | 785..1019 | 26..260 | 320 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9511737..9511997 | 415..155 | 1305 | 100 | Minus |
3R | 32079331 | 3R | 9511507..9511683 | 587..411 | 885 | 100 | Minus |
3R | 32079331 | 3R | 9512153..9512291 | 155..17 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1860968..1861202 | 260..26 | 320 | 75.7 | Minus |
3L | 28110227 | 3L | 4140054..4140142 | 183..271 | 205 | 82 | Plus |
2R | 25286936 | 2R | 16109166..16109231 | 234..169 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:30 has no hits.
BS04665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:42 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:52 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 432..1009 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:29 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 442..1009 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:42 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 432..1009 | 9..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:29 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras85D-RA | 442..1009 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:29 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9511510..9511681 | 413..584 | 100 | <- | Minus |
3R | 9511740..9511996 | 156..412 | 100 | <- | Minus |
3R | 9512153..9512291 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:29 Download gff for
BS04665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5337232..5337403 | 413..584 | 100 | <- | Minus |
arm_3R | 5337462..5337718 | 156..412 | 100 | <- | Minus |
arm_3R | 5337875..5338013 | 17..155 | 100 | | Minus |
BS04665.pep Sequence
Translation from 16 to 585
> BS04665.pep
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET
CLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI
KRVKDAEEVPMVLVGNKCDLASWNVNNEQAREVAKQYGIPYIETSAKTRM
GVDDAFYTLVREIRKDKDNKGRRGRKMNKPNRRFKCKML*
BS04665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras85D-PA | 189 | CG9375-PA | 1..189 | 1..189 | 977 | 100 | Plus |
R-PC | 184 | CG1956-PC | 1..178 | 1..182 | 515 | 54.1 | Plus |
R-PB | 184 | CG1956-PB | 1..178 | 1..182 | 515 | 54.1 | Plus |
R-PA | 184 | CG1956-PA | 1..178 | 1..182 | 515 | 54.1 | Plus |
Ras64B-PA | 192 | CG1167-PA | 3..168 | 1..165 | 513 | 62.7 | Plus |