Clone Sequence Records
BS04669.3prime Sequence
977 bp (784 high quality bases) assembled on 2005-12-02
> BS04669.3prime
ATGGTCTAGAAAGCTTCTAGAATTCAGCAAACTCCTTGGCACACTTCTCG
GTGCTGGAGATCCGCAGCGCCTCCTCCTCGTAGTCATCGAAATTGCTCGT
GTCGCCGGGACCCTTACACCGCGGAATGAACGGCGCCTCGATTTTCTTTT
GGAAGATCGCAATCCAGTCGGTGGAGGCGAACCACTTCTGGTTCTTAATA
TCATTGACGCCCGCCTTCAGATTGCCGTAGCGCTTGGTCAGATCCACCTG
CAGCAGGTTGCGCAGTAGGTCCTTCAGATCGGAGCCAAAGTGCGATGGGA
AGCGCACCTTGCCGGAGACGATCTTCTCGTAGATCTGAATCGGCTGATCC
GCAAAGAACGGCGGATAGCCGGCGGCCATTTCGTAGACGAGTACGCCCAA
CGCCCACCAGTCCACGGCCTTGTTATAGCCCTTGGACAGAATGATCTCCG
GGGCCAGGTATTCGGGCGTGCCGCACAGTGTCCAGGTGCGTCCCTTGACC
CGCTTGGCAAAACCGAAGTCCGTCACCTTGAGGTAGCCCTGCGAGTCAAT
CAGCAGATTCTCCGGCTTCAGATCACGGTAGATGAGGTCCAAGTAGTGCA
GGTACTCGAAGGCCAGCACGATTTGCGCCGCGTAGAAGCGCGAGTGCGGC
TCCGAGAAGCGGCCCACCTTGCGCAGGTGGGAGAACATCTCGCCACCGGG
AACATACTCCAGCACCATGTAAAGGTTGGAGTTGTCCTTGAAGTGGTAGC
GCAGCGAGACGAGGAAGGGGAACTGAATGGCCTGCAGGATTCGCTTCTCG
TTCAGCGTGTGCTCCACCTGCTTCAGCTTGACCACCTTCTGCTTGTCGAG
GATCTTCATGGCATAATAGTCTTTCGTGGGCTTGTGCTGGACGATCATGA
CACGGGCCAAAGGAGCGGGTGCCCAGGGTCTTGATCCGTTCGAGGTCATC
GAGGGCGGCGGGTGTTGGTCGGATTGC
BS04669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4379-PA | 1062 | Pka-C1-RA | 174..1062 | 905..17 | 4445 | 100 | Minus |
| CG4379-PB | 1062 | Pka-C1-RB | 174..1062 | 905..17 | 4445 | 100 | Minus |
| CG4379-PC | 1062 | Pka-C1-RC | 174..1062 | 905..17 | 4445 | 100 | Minus |
| CG4379-PA | 1062 | Pka-C1-RA | 119..175 | 961..905 | 235 | 96.4 | Minus |
| CG4379-PB | 1062 | Pka-C1-RB | 119..175 | 961..905 | 235 | 96.4 | Minus |
| CG4379-PC | 1062 | Pka-C1-RC | 119..175 | 961..905 | 235 | 96.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C1-RD | 4480 | CG4379-RD | 1367..2326 | 977..16 | 4730 | 99.6 | Minus |
| Pka-C1-RC | 5312 | CG4379-RC | 1152..2111 | 977..16 | 4730 | 99.6 | Minus |
| Pka-C1-RB | 5114 | CG4379-RB | 954..1913 | 977..16 | 4730 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9696504..9697463 | 16..977 | 4680 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:20:21 has no hits.
BS04669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:31 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4379-PB | 104..1062 | 17..977 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:52 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4379-PC | 104..1062 | 17..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:03:44 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 954..1923 | 9..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:11 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 954..1923 | 9..977 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:11 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9696494..9697463 | 9..977 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:03:44 Download gff for
BS04669.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9696494..9697463 | 9..977 | 99 | | Plus |
BS04669.5prime Sequence
866 bp (845 high quality bases) assembled on 2005-11-29
> BS04669.5prime
GAAGTTATCAGTCGACATGGGCAACAACGCCACCACGTCGAATAAGAAGG
TCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGAGGAG
TTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGA
CTTCGAACGGATCAAGACCCTGGGCACCGGCTCCTTTGGCCGTGTCATGA
TCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGAC
AAGCAGAAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAA
GCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGTCTCGCTGCGCTACC
ACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGT
GGCGAGATGTTCTCCCACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCA
CTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTGCACT
ACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGAC
TCGCAGGGCTACCTCAAGGTGACGGACTTCGGTTTTGCCAAGCGGGTCAA
GGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGA
TCATTCTGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGC
GTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCGTTCTTTGCGGATCA
GCCGATTCAGATCTACGAGAAGATCGTCTCCGGCAAGGTGCGCTTCCCAT
CGCACTTTGGCTCCGATCTGAAGGACCTACTGCGCAACCTGCTGCAGGTG
GATCTGACCAAGCGCT
BS04669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4379-PA | 1062 | Pka-C1-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
| CG4379-PB | 1062 | Pka-C1-RB | 1..850 | 17..866 | 4250 | 100 | Plus |
| CG4379-PC | 1062 | Pka-C1-RC | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C1-RD | 4480 | CG4379-RD | 1264..2113 | 17..866 | 4250 | 100 | Plus |
| Pka-C1-RC | 5312 | CG4379-RC | 1049..1898 | 17..866 | 4250 | 100 | Plus |
| Pka-C1-RB | 5114 | CG4379-RB | 851..1700 | 17..866 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9696717..9697566 | 866..17 | 4250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:58:20 has no hits.
BS04669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:32 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4379-PB | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:53 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4379-PC | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:23:43 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 851..1700 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:36:20 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 851..1700 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:36:20 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9696717..9697566 | 17..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:23:43 Download gff for
BS04669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9696717..9697566 | 17..866 | 100 | | Minus |
BS04669.complete Sequence
1094 bp (1094 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634999
> BS04669.complete
GAAGTTATCAGTCGACATGGGCAACAACGCCACCACGTCGAATAAGAAGG
TCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGAGGAG
TTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGA
CTTCGAACGGATCAAGACCCTGGGCACCGGCTCCTTTGGCCGTGTCATGA
TCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGAC
AAGCAGAAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAA
GCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGTCTCGCTGCGCTACC
ACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGT
GGCGAGATGTTCTCCCACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCA
CTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTGCACT
ACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGAC
TCGCAGGGCTACCTCAAGGTGACGGACTTCGGTTTTGCCAAGCGGGTCAA
GGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGA
TCATTCTGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGC
GTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCGTTCTTTGCGGATCA
GCCGATTCAGATCTACGAGAAGATCGTCTCCGGCAAGGTGCGCTTCCCAT
CGCACTTTGGCTCCGATCTGAAGGACCTACTGCGCAACCTGCTGCAGGTG
GATCTGACCAAGCGCTACGGCAATCTGAAGGCGGGCGTCAATGATATTAA
GAACCAGAAGTGGTTCGCCTCCACCGACTGGATTGCGATCTTCCAAAAGA
AAATCGAGGCGCCGTTCATTCCGCGGTGTAAGGGTCCCGGCGACACGAGC
AATTTCGATGACTACGAGGAGGAGGCGCTGCGGATCTCCAGCACCGAGAA
GTGTGCCAAGGAGTTTGCTGAATTCTAGAAGCTTTCTAGACCAT
BS04669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C1-RD | 1062 | CG4379-PD | 1..1062 | 17..1078 | 5310 | 100 | Plus |
| Pka-C1-RC | 1062 | CG4379-PC | 1..1062 | 17..1078 | 5310 | 100 | Plus |
| Pka-C1-RB | 1062 | CG4379-PB | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C1-RD | 4480 | CG4379-RD | 1264..2326 | 17..1079 | 5315 | 100 | Plus |
| Pka-C1-RC | 5312 | CG4379-RC | 1049..2111 | 17..1079 | 5315 | 100 | Plus |
| Pka-C1-RB | 5114 | CG4379-RB | 851..1913 | 17..1079 | 5315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9696504..9697566 | 1079..17 | 5315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:54:37 has no hits.
BS04669.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:18 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RC | 1045..2117 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:10 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 851..1912 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:17 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RC | 1045..2117 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:49 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C1-RB | 851..1912 | 17..1078 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:49 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9696505..9697566 | 17..1078 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:10 Download gff for
BS04669.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9696505..9697566 | 17..1078 | 100 | | Minus |
BS04669.pep Sequence
Translation from 16 to 1077
> BS04669.pep
MGNNATTSNKKVDAAETVKEFLEQAKEEFEDKWRRNPTNTAALDDFERIK
TLGTGSFGRVMIVQHKPTKDYYAMKILDKQKVVKLKQVEHTLNEKRILQA
IQFPFLVSLRYHFKDNSNLYMVLEYVPGGEMFSHLRKVGRFSEPHSRFYA
AQIVLAFEYLHYLDLIYRDLKPENLLIDSQGYLKVTDFGFAKRVKGRTWT
LCGTPEYLAPEIILSKGYNKAVDWWALGVLVYEMAAGYPPFFADQPIQIY
EKIVSGKVRFPSHFGSDLKDLLRNLLQVDLTKRYGNLKAGVNDIKNQKWF
ASTDWIAIFQKKIEAPFIPRCKGPGDTSNFDDYEEEALRISSTEKCAKEF
AEF*
BS04669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C1-PD | 353 | CG4379-PD | 1..353 | 1..353 | 1863 | 100 | Plus |
| Pka-C1-PC | 353 | CG4379-PC | 1..353 | 1..353 | 1863 | 100 | Plus |
| Pka-C1-PB | 353 | CG4379-PB | 1..353 | 1..353 | 1863 | 100 | Plus |
| Pka-C3-PA | 500 | CG6117-PA | 148..481 | 3..336 | 946 | 51.8 | Plus |
| Pka-C3-PB | 583 | CG6117-PB | 231..564 | 3..336 | 946 | 51.8 | Plus |
