Clone BS04671 Report

Search the DGRC for BS04671

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG7997-RA
Protein status:BS04671.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04671.3prime Sequence

947 bp (867 high quality bases) assembled on 2005-12-02

> BS04671.3prime
ATGGTCTAGAAAGCTTTTACAACGCTGTAAACTTGTAGAAAGTTACGCCA
TTGGGATTGACGCGTGTGATGAACTGACTCTCAGACTGGAAGACGCCCAA
CTTGCTGCTGGCATCGTACAGATCCTGCACATTATAACCCTTGGGATTCG
TCAATCCGAGCTCCTTGACCGTGAAGGGGATCCTGTAGGGAGCGCCATCA
TCTCGGCGACTGACAAAGGCGACAGCATAGGAGTGATGTCCACTCTTGGT
TACTGGCGTAATGGGACGCTTCCAGACTTCGATTTGGTTGCGGGACAAAA
CACGGCGCCCCTGGATGCCCAGCTCATCCTGGTCCACAGCAATAACCGCA
CGATTCTGGAGTATAGCCTTGATCTCGGGACGCACTGCAGCCAGATCATT
GGACATAATTAGAGGAGCTGCCATAATGGCCCAAATCGCCATCTGCAGCT
TGCTTTGATCGTAGCTCAAGCCGTAGTTTCCCAGCAGCAGCATATCTGGA
TCGTTCCAATGTCCTGGTCCGCCATGCGGCTGAATCCTGTCCTGATTCTT
GGCAAAGTAGTCAATGATCTGCATAAGGGACTCGAGCGAGTCTTCGATGT
CGTCCCAGTTGCGCCACAGATTACAGTGCTGCTTGAGTGACTCATAATCG
GGCATTTCTCCTGCATCCTCCTGATACGCGGGCCAACTGCAGGAGTATAC
CATCGGTCGACCAGTTTCATTGAGCAGGCGTCCGAACTCCGGATAGCCCG
AGGCCATGTCGCTGATATTGGCATAACAGCCGTCCAGCTTCACGTAGTCC
ACATCCCAATCCGCAAAGGTTTGGGCGTCCAGCTTCATATGCTTGATCAC
TCCGGGATAGCCAGCGCAGGTGTTGGTGCCGTAATCCTGATACAAGCCAA
ACTTCAGACCCTGGTTGTGGATATGATCGGATAAAGCATTTAAGCCG

BS04671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-PB 1254 CG7997-RB 329..1254 942..17 4630 100 Minus
CG7997-PA 1254 CG7997-RA 329..1254 942..17 4630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-RA 1729 CG7997-RA 660..1590 947..17 4640 99.9 Minus
CG7997-RB 1680 CG7997-RB 611..1541 947..17 4640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16341844..16342415 351..922 2860 100 Plus
2R 25286936 2R 16341480..16341783 48..351 1520 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:28:29 has no hits.

BS04671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:35 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-PA 324..1254 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:57 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-PA 324..1254 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:18:16 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 611..1543 13..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:28 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 611..1543 13..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:28 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16341388..16341421 13..48 94 <- Plus
2R 16341481..16341782 49..350 100 <- Plus
2R 16341844..16342415 351..922 100 <- Plus
2R 16342477..16342501 923..947 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:18:16 Download gff for BS04671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12228893..12228926 13..48 94 <- Plus
arm_2R 12228986..12229287 49..350 100 <- Plus
arm_2R 12229349..12229920 351..922 100 <- Plus
arm_2R 12229982..12230006 923..947 96   Plus

BS04671.5prime Sequence

849 bp (804 high quality bases) assembled on 2005-11-29

> BS04671.5prime
GAAGTTATCAGTCGACATGTACGGAACGTGGGGCGTCTTTCTGGGCGGGA
TTCTTCTGCTGCAGGTTCTGCAATTATCCATGGGCCTCGATAATGGCCTG
GCACTAAAGCCACCTATGGGCTGGATGTCCTGGGAGCGATTCCGTTGCAT
CACCGACTGTAAACTGTATCCGGATGAGTGCATCAGTGAAAAACTTTTCC
AAAGACATGCGGATCTCCTGGTTTCTGAAGGATATGCGGATGCTGGCTAC
GAGTACGTCATCATAGATGACTGCTGGCTGGAGAAGAATCGCGACAACGA
TACCCAGAAGCTGGTTCCGGACAGAAAGCGCTTTCCCAACGGCCTAAATG
CTTTATCCGATCATATCCACAACCAGGGTCTGAAGTTTGGCTTGTATCAG
GATTACGGCACCAACACCTGCGCTGGCTATCCCGGAGTGATCAAGCATAT
GAAGCTGGACGCCCAAACCTTTGCGGATTGGGATGTGGACTACGTGAAGC
TGGACGGCTGTTATGCCAATATCAGCGACATGGCCTCGGGCTATCCGGAG
TTCGGACGCCTGCTCAATGAAACTGGTCGACCGATGGTATACTCCTGCAG
TTGGCCCGCGTATCAGGAGGATGCAGGAGAAATGCCCGATTATGAGTCAC
TCAAGCAGCACTGTAATCTGTGGCGCAACTGGGACGACATCGAAGACTCG
CTCGAGTCCCTTATGCAGATCATTGACTACTTTGCCAAGAATCAGGACAG
GATTCAGCCGCATGGCGGACCAGGACATTGGAACGATCCAGATATGCTGC
TGCTGGGAAACTACGGCTTGAGCTACGATCAAAGCAAGCTGCAGATGGC

BS04671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-PB 1254 CG7997-RB 1..833 17..849 4165 100 Plus
CG7997-PA 1254 CG7997-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-RA 1729 CG7997-RA 332..1169 12..849 4175 99.9 Plus
CG7997-RB 1680 CG7997-RB 283..1120 12..849 4175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16341931..16342415 849..365 2425 100 Minus
2R 25286936 2R 16342477..16342658 364..183 910 100 Minus
2R 25286936 2R 16343094..16343191 109..12 475 99 Minus
2R 25286936 2R 16342723..16342771 186..138 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:16:30 has no hits.

BS04671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:36 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:58 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:21 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 283..1120 12..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:12 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 283..1120 12..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:12 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16341931..16342415 365..849 100 <- Minus
2R 16342477..16342654 187..364 100 <- Minus
2R 16342723..16342770 139..186 100 <- Minus
2R 16343006..16343035 109..138 100 <- Minus
2R 16343095..16343191 12..108 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:21 Download gff for BS04671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12229436..12229920 365..849 100 <- Minus
arm_2R 12229982..12230159 187..364 100 <- Minus
arm_2R 12230228..12230275 139..186 100 <- Minus
arm_2R 12230511..12230540 109..138 100 <- Minus
arm_2R 12230600..12230696 12..108 98   Minus

BS04671.complete Sequence

1286 bp (1286 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638778

> BS04671.complete
GAAGTTATCAGTCGACATGTACGGAACGTGGGGCGTCTTTCTGGGCGGGA
TTCTTCTGCTGCAGGTTCTGCAATTATCCATGGGCCTCGATAATGGCCTG
GCACTAAAGCCACCTATGGGCTGGATGTCCTGGGAGCGATTCCGTTGCAT
CACCGACTGTAAACTGTATCCGGATGAGTGCATCAGTGAAAAACTTTTCC
AAAGACATGCGGATCTCCTGGTTTCTGAAGGATATGCGGATGCTGGCTAC
GAGTACGTCATCATAGATGACTGCTGGCTGGAGAAGAATCGCGACAACGA
TACCCAGAAGCTGGTTCCGGACAGAAAGCGCTTTCCCAACGGCCTAAATG
CTTTATCCGATCATATCCACAACCAGGGTCTGAAGTTTGGCTTGTATCAG
GATTACGGCACCAACACCTGCGCTGGCTATCCCGGAGTGATCAAGCATAT
GAAGCTGGACGCCCAAACCTTTGCGGATTGGGATGTGGACTACGTGAAGC
TGGACGGCTGTTATGCCAATATCAGCGACATGGCCTCGGGCTATCCGGAG
TTCGGACGCCTGCTCAATGAAACTGGTCGACCGATGGTATACTCCTGCAG
TTGGCCCGCGTATCAGGAGGATGCAGGAGAAATGCCCGATTATGAGTCAC
TCAAGCAGCACTGTAATCTGTGGCGCAACTGGGACGACATCGAAGACTCG
CTCGAGTCCCTTATGCAGATCATTGACTACTTTGCCAAGAATCAGGACAG
GATTCAGCCGCATGGCGGACCAGGACATTGGAACGATCCAGATATGCTGC
TGCTGGGAAACTACGGCTTGAGCTACGATCAAAGCAAGCTGCAGATGGCG
ATTTGGGCCATTATGGCAGCTCCTCTAATTATGTCCAATGATCTGGCTGC
AGTGCGTCCCGAGATCAAGGCTATACTCCAGAATCGTGCGGTTATTGCTG
TGGACCAGGATGAGCTGGGCATCCAGGGGCGCCGTGTTTTGTCCCGCAAC
CAAATCGAAGTCTGGAAGCGTCCCATTACGCCAGTAACCAAGAGTGGACA
TCACTCCTATGCTGTCGCCTTTGTCAGTCGCCGAGATGATGGCGCTCCCT
ACAGGATCCCCTTCACGGTCAAGGAGCTCGGATTGACGAATCCCAAGGGT
TATAATGTGCAGGATCTGTACGATGCCAGCAGCAAGTTGGGCGTCTTCCA
GTCTGAGAGTCAGTTCATCACACGCGTCAATCCCAATGGCGTAACTTTCT
ACAAGTTTACAGCGTTGTAAAAGCTTTCTAGACCAT

BS04671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-RA 1254 CG7997-PA 1..1254 17..1270 6270 100 Plus
CG7997-RB 1254 CG7997-PB 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-RA 1729 CG7997-RA 332..1590 12..1270 6280 99.9 Plus
CG7997-RB 1680 CG7997-RB 283..1541 12..1270 6280 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16341844..16342415 936..365 2860 100 Minus
2R 25286936 2R 16341480..16341783 1239..936 1520 100 Minus
2R 25286936 2R 16342477..16342658 364..183 910 100 Minus
2R 25286936 2R 16343094..16343191 109..12 475 99 Minus
2R 25286936 2R 16342723..16342771 186..138 245 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:19:57 has no hits.

BS04671.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:45 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 1..1254 17..1270 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:55 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 368..1628 12..1274 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:09 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 288..1539 17..1268 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:45 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RA 368..1628 12..1274 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:37 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG7997-RB 288..1539 17..1268 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:37 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16341392..16341421 1239..1268 100 <- Minus
2R 16341481..16341782 937..1238 100 <- Minus
2R 16341844..16342415 365..936 100 <- Minus
2R 16342477..16342654 187..364 100 <- Minus
2R 16342723..16342770 139..186 100 <- Minus
2R 16343006..16343035 109..138 100 <- Minus
2R 16343095..16343186 17..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:09 Download gff for BS04671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12228897..12228926 1239..1268 100 <- Minus
arm_2R 12228986..12229287 937..1238 100 <- Minus
arm_2R 12229349..12229920 365..936 100 <- Minus
arm_2R 12229982..12230159 187..364 100 <- Minus
arm_2R 12230228..12230275 139..186 100 <- Minus
arm_2R 12230511..12230540 109..138 100 <- Minus
arm_2R 12230600..12230691 17..108 100   Minus

BS04671.pep Sequence

Translation from 16 to 1269

> BS04671.pep
MYGTWGVFLGGILLLQVLQLSMGLDNGLALKPPMGWMSWERFRCITDCKL
YPDECISEKLFQRHADLLVSEGYADAGYEYVIIDDCWLEKNRDNDTQKLV
PDRKRFPNGLNALSDHIHNQGLKFGLYQDYGTNTCAGYPGVIKHMKLDAQ
TFADWDVDYVKLDGCYANISDMASGYPEFGRLLNETGRPMVYSCSWPAYQ
EDAGEMPDYESLKQHCNLWRNWDDIEDSLESLMQIIDYFAKNQDRIQPHG
GPGHWNDPDMLLLGNYGLSYDQSKLQMAIWAIMAAPLIMSNDLAAVRPEI
KAILQNRAVIAVDQDELGIQGRRVLSRNQIEVWKRPITPVTKSGHHSYAV
AFVSRRDDGAPYRIPFTVKELGLTNPKGYNVQDLYDASSKLGVFQSESQF
ITRVNPNGVTFYKFTAL*

BS04671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7997-PA 417 CG7997-PA 1..417 1..417 2262 100 Plus
CG7997-PB 417 CG7997-PB 1..417 1..417 2262 100 Plus
CG5731-PA 413 CG5731-PA 18..404 24..413 1320 61.8 Plus