Clone Sequence Records
BS04671.3prime Sequence
947 bp (867 high quality bases) assembled on 2005-12-02
> BS04671.3prime
ATGGTCTAGAAAGCTTTTACAACGCTGTAAACTTGTAGAAAGTTACGCCA
TTGGGATTGACGCGTGTGATGAACTGACTCTCAGACTGGAAGACGCCCAA
CTTGCTGCTGGCATCGTACAGATCCTGCACATTATAACCCTTGGGATTCG
TCAATCCGAGCTCCTTGACCGTGAAGGGGATCCTGTAGGGAGCGCCATCA
TCTCGGCGACTGACAAAGGCGACAGCATAGGAGTGATGTCCACTCTTGGT
TACTGGCGTAATGGGACGCTTCCAGACTTCGATTTGGTTGCGGGACAAAA
CACGGCGCCCCTGGATGCCCAGCTCATCCTGGTCCACAGCAATAACCGCA
CGATTCTGGAGTATAGCCTTGATCTCGGGACGCACTGCAGCCAGATCATT
GGACATAATTAGAGGAGCTGCCATAATGGCCCAAATCGCCATCTGCAGCT
TGCTTTGATCGTAGCTCAAGCCGTAGTTTCCCAGCAGCAGCATATCTGGA
TCGTTCCAATGTCCTGGTCCGCCATGCGGCTGAATCCTGTCCTGATTCTT
GGCAAAGTAGTCAATGATCTGCATAAGGGACTCGAGCGAGTCTTCGATGT
CGTCCCAGTTGCGCCACAGATTACAGTGCTGCTTGAGTGACTCATAATCG
GGCATTTCTCCTGCATCCTCCTGATACGCGGGCCAACTGCAGGAGTATAC
CATCGGTCGACCAGTTTCATTGAGCAGGCGTCCGAACTCCGGATAGCCCG
AGGCCATGTCGCTGATATTGGCATAACAGCCGTCCAGCTTCACGTAGTCC
ACATCCCAATCCGCAAAGGTTTGGGCGTCCAGCTTCATATGCTTGATCAC
TCCGGGATAGCCAGCGCAGGTGTTGGTGCCGTAATCCTGATACAAGCCAA
ACTTCAGACCCTGGTTGTGGATATGATCGGATAAAGCATTTAAGCCG
BS04671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-PB | 1254 | CG7997-RB | 329..1254 | 942..17 | 4630 | 100 | Minus |
CG7997-PA | 1254 | CG7997-RA | 329..1254 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-RA | 1729 | CG7997-RA | 660..1590 | 947..17 | 4640 | 99.9 | Minus |
CG7997-RB | 1680 | CG7997-RB | 611..1541 | 947..17 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16341844..16342415 | 351..922 | 2860 | 100 | Plus |
2R | 25286936 | 2R | 16341480..16341783 | 48..351 | 1520 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:28:29 has no hits.
BS04671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:35 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-PA | 324..1254 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:57 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-PA | 324..1254 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:18:16 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 611..1543 | 13..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:28 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 611..1543 | 13..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:28 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16341388..16341421 | 13..48 | 94 | <- | Plus |
2R | 16341481..16341782 | 49..350 | 100 | <- | Plus |
2R | 16341844..16342415 | 351..922 | 100 | <- | Plus |
2R | 16342477..16342501 | 923..947 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:18:16 Download gff for
BS04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12228893..12228926 | 13..48 | 94 | <- | Plus |
arm_2R | 12228986..12229287 | 49..350 | 100 | <- | Plus |
arm_2R | 12229349..12229920 | 351..922 | 100 | <- | Plus |
arm_2R | 12229982..12230006 | 923..947 | 96 | | Plus |
BS04671.5prime Sequence
849 bp (804 high quality bases) assembled on 2005-11-29
> BS04671.5prime
GAAGTTATCAGTCGACATGTACGGAACGTGGGGCGTCTTTCTGGGCGGGA
TTCTTCTGCTGCAGGTTCTGCAATTATCCATGGGCCTCGATAATGGCCTG
GCACTAAAGCCACCTATGGGCTGGATGTCCTGGGAGCGATTCCGTTGCAT
CACCGACTGTAAACTGTATCCGGATGAGTGCATCAGTGAAAAACTTTTCC
AAAGACATGCGGATCTCCTGGTTTCTGAAGGATATGCGGATGCTGGCTAC
GAGTACGTCATCATAGATGACTGCTGGCTGGAGAAGAATCGCGACAACGA
TACCCAGAAGCTGGTTCCGGACAGAAAGCGCTTTCCCAACGGCCTAAATG
CTTTATCCGATCATATCCACAACCAGGGTCTGAAGTTTGGCTTGTATCAG
GATTACGGCACCAACACCTGCGCTGGCTATCCCGGAGTGATCAAGCATAT
GAAGCTGGACGCCCAAACCTTTGCGGATTGGGATGTGGACTACGTGAAGC
TGGACGGCTGTTATGCCAATATCAGCGACATGGCCTCGGGCTATCCGGAG
TTCGGACGCCTGCTCAATGAAACTGGTCGACCGATGGTATACTCCTGCAG
TTGGCCCGCGTATCAGGAGGATGCAGGAGAAATGCCCGATTATGAGTCAC
TCAAGCAGCACTGTAATCTGTGGCGCAACTGGGACGACATCGAAGACTCG
CTCGAGTCCCTTATGCAGATCATTGACTACTTTGCCAAGAATCAGGACAG
GATTCAGCCGCATGGCGGACCAGGACATTGGAACGATCCAGATATGCTGC
TGCTGGGAAACTACGGCTTGAGCTACGATCAAAGCAAGCTGCAGATGGC
BS04671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-PB | 1254 | CG7997-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
CG7997-PA | 1254 | CG7997-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-RA | 1729 | CG7997-RA | 332..1169 | 12..849 | 4175 | 99.9 | Plus |
CG7997-RB | 1680 | CG7997-RB | 283..1120 | 12..849 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16341931..16342415 | 849..365 | 2425 | 100 | Minus |
2R | 25286936 | 2R | 16342477..16342658 | 364..183 | 910 | 100 | Minus |
2R | 25286936 | 2R | 16343094..16343191 | 109..12 | 475 | 99 | Minus |
2R | 25286936 | 2R | 16342723..16342771 | 186..138 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:16:30 has no hits.
BS04671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:36 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:17:58 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:21 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 283..1120 | 12..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:12 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 283..1120 | 12..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:12 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16341931..16342415 | 365..849 | 100 | <- | Minus |
2R | 16342477..16342654 | 187..364 | 100 | <- | Minus |
2R | 16342723..16342770 | 139..186 | 100 | <- | Minus |
2R | 16343006..16343035 | 109..138 | 100 | <- | Minus |
2R | 16343095..16343191 | 12..108 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:21 Download gff for
BS04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12229436..12229920 | 365..849 | 100 | <- | Minus |
arm_2R | 12229982..12230159 | 187..364 | 100 | <- | Minus |
arm_2R | 12230228..12230275 | 139..186 | 100 | <- | Minus |
arm_2R | 12230511..12230540 | 109..138 | 100 | <- | Minus |
arm_2R | 12230600..12230696 | 12..108 | 98 | | Minus |
BS04671.complete Sequence
1286 bp (1286 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638778
> BS04671.complete
GAAGTTATCAGTCGACATGTACGGAACGTGGGGCGTCTTTCTGGGCGGGA
TTCTTCTGCTGCAGGTTCTGCAATTATCCATGGGCCTCGATAATGGCCTG
GCACTAAAGCCACCTATGGGCTGGATGTCCTGGGAGCGATTCCGTTGCAT
CACCGACTGTAAACTGTATCCGGATGAGTGCATCAGTGAAAAACTTTTCC
AAAGACATGCGGATCTCCTGGTTTCTGAAGGATATGCGGATGCTGGCTAC
GAGTACGTCATCATAGATGACTGCTGGCTGGAGAAGAATCGCGACAACGA
TACCCAGAAGCTGGTTCCGGACAGAAAGCGCTTTCCCAACGGCCTAAATG
CTTTATCCGATCATATCCACAACCAGGGTCTGAAGTTTGGCTTGTATCAG
GATTACGGCACCAACACCTGCGCTGGCTATCCCGGAGTGATCAAGCATAT
GAAGCTGGACGCCCAAACCTTTGCGGATTGGGATGTGGACTACGTGAAGC
TGGACGGCTGTTATGCCAATATCAGCGACATGGCCTCGGGCTATCCGGAG
TTCGGACGCCTGCTCAATGAAACTGGTCGACCGATGGTATACTCCTGCAG
TTGGCCCGCGTATCAGGAGGATGCAGGAGAAATGCCCGATTATGAGTCAC
TCAAGCAGCACTGTAATCTGTGGCGCAACTGGGACGACATCGAAGACTCG
CTCGAGTCCCTTATGCAGATCATTGACTACTTTGCCAAGAATCAGGACAG
GATTCAGCCGCATGGCGGACCAGGACATTGGAACGATCCAGATATGCTGC
TGCTGGGAAACTACGGCTTGAGCTACGATCAAAGCAAGCTGCAGATGGCG
ATTTGGGCCATTATGGCAGCTCCTCTAATTATGTCCAATGATCTGGCTGC
AGTGCGTCCCGAGATCAAGGCTATACTCCAGAATCGTGCGGTTATTGCTG
TGGACCAGGATGAGCTGGGCATCCAGGGGCGCCGTGTTTTGTCCCGCAAC
CAAATCGAAGTCTGGAAGCGTCCCATTACGCCAGTAACCAAGAGTGGACA
TCACTCCTATGCTGTCGCCTTTGTCAGTCGCCGAGATGATGGCGCTCCCT
ACAGGATCCCCTTCACGGTCAAGGAGCTCGGATTGACGAATCCCAAGGGT
TATAATGTGCAGGATCTGTACGATGCCAGCAGCAAGTTGGGCGTCTTCCA
GTCTGAGAGTCAGTTCATCACACGCGTCAATCCCAATGGCGTAACTTTCT
ACAAGTTTACAGCGTTGTAAAAGCTTTCTAGACCAT
BS04671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-RA | 1254 | CG7997-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
CG7997-RB | 1254 | CG7997-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-RA | 1729 | CG7997-RA | 332..1590 | 12..1270 | 6280 | 99.9 | Plus |
CG7997-RB | 1680 | CG7997-RB | 283..1541 | 12..1270 | 6280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16341844..16342415 | 936..365 | 2860 | 100 | Minus |
2R | 25286936 | 2R | 16341480..16341783 | 1239..936 | 1520 | 100 | Minus |
2R | 25286936 | 2R | 16342477..16342658 | 364..183 | 910 | 100 | Minus |
2R | 25286936 | 2R | 16343094..16343191 | 109..12 | 475 | 99 | Minus |
2R | 25286936 | 2R | 16342723..16342771 | 186..138 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:19:57 has no hits.
BS04671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:45 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RA | 1..1254 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:55 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RA | 368..1628 | 12..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:09 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 288..1539 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:45 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RA | 368..1628 | 12..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:37 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7997-RB | 288..1539 | 17..1268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:37 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16341392..16341421 | 1239..1268 | 100 | <- | Minus |
2R | 16341481..16341782 | 937..1238 | 100 | <- | Minus |
2R | 16341844..16342415 | 365..936 | 100 | <- | Minus |
2R | 16342477..16342654 | 187..364 | 100 | <- | Minus |
2R | 16342723..16342770 | 139..186 | 100 | <- | Minus |
2R | 16343006..16343035 | 109..138 | 100 | <- | Minus |
2R | 16343095..16343186 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:09 Download gff for
BS04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12228897..12228926 | 1239..1268 | 100 | <- | Minus |
arm_2R | 12228986..12229287 | 937..1238 | 100 | <- | Minus |
arm_2R | 12229349..12229920 | 365..936 | 100 | <- | Minus |
arm_2R | 12229982..12230159 | 187..364 | 100 | <- | Minus |
arm_2R | 12230228..12230275 | 139..186 | 100 | <- | Minus |
arm_2R | 12230511..12230540 | 109..138 | 100 | <- | Minus |
arm_2R | 12230600..12230691 | 17..108 | 100 | | Minus |
BS04671.pep Sequence
Translation from 16 to 1269
> BS04671.pep
MYGTWGVFLGGILLLQVLQLSMGLDNGLALKPPMGWMSWERFRCITDCKL
YPDECISEKLFQRHADLLVSEGYADAGYEYVIIDDCWLEKNRDNDTQKLV
PDRKRFPNGLNALSDHIHNQGLKFGLYQDYGTNTCAGYPGVIKHMKLDAQ
TFADWDVDYVKLDGCYANISDMASGYPEFGRLLNETGRPMVYSCSWPAYQ
EDAGEMPDYESLKQHCNLWRNWDDIEDSLESLMQIIDYFAKNQDRIQPHG
GPGHWNDPDMLLLGNYGLSYDQSKLQMAIWAIMAAPLIMSNDLAAVRPEI
KAILQNRAVIAVDQDELGIQGRRVLSRNQIEVWKRPITPVTKSGHHSYAV
AFVSRRDDGAPYRIPFTVKELGLTNPKGYNVQDLYDASSKLGVFQSESQF
ITRVNPNGVTFYKFTAL*
BS04671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7997-PA | 417 | CG7997-PA | 1..417 | 1..417 | 2262 | 100 | Plus |
CG7997-PB | 417 | CG7997-PB | 1..417 | 1..417 | 2262 | 100 | Plus |
CG5731-PA | 413 | CG5731-PA | 18..404 | 24..413 | 1320 | 61.8 | Plus |