Clone Sequence Records
BS04672.3prime Sequence
960 bp (886 high quality bases) assembled on 2005-12-02
> BS04672.3prime
ATGGTCTAGAAAGCTTTTACTTTCGCTTCTTAAGGTTCTCGAAGCGACGT
GACAGGTCATCGAAATCAATCTCATCCTCGTCGTTCTTCTTCTCGGCACC
TGCGCCCGGAATATCTGGCAGATCGTTGGGAACGTTGGGCAGCGAGGGGA
AGTCCAATGCCGGAGGAGCACTTGGTAGCGTGGGATTACCCGGTGGCAGC
TTGGATCGGGGTTGTGGTTTCGGTTTGTTGGCATTCTGGAGATTTACAGG
ATTAATGGAGGTGTAACGCGGCGGCGGATCATTTTCGGGTTTGGGGCGCA
AAATATTCTCATCCGGGCTGCCCGAGCCATCCGTGTTGTTCGCTTCACGA
TCGATAAAGTTGGTGTTCAGATCCTTCTCCTCGGCACATTTGGCAGGCAG
GACTGCATGCGTTGGCGGCTGATTGGGCGGTATATTGTAGGCAAACGGCG
GCGGTGCCTGCACGGGATGGGGTAGAGCATATGCACCAGCTGGAGCTCCA
CCTCCTCCGCCGCCACCACCTCCACCGAAGGGTGGGTAATTGAAGGGCTT
TGCGCTCGGTGGCATCGGCATGTCGGGCAGTGCTGGCATAGCCGGATAGC
CAATGAAGCCCATTTGTGGCGGCGCAGCACCACCGCCGCCAGCACCTCCG
CCTCCGCTCAAGTTGTTCCGATCGGAGAGGTCAATCAGATGCGGCTGCTG
TGGCTGATCCTCCTGCATAACCTGCGGATCCGGTTCGTATTCGATGTTGT
AGTTCTTGGCAATGGCAATGAGGTAATTCTCCACCAAAAGCTTGGGTGGT
GCCTGCAGCGTCAGCTTGTGCATGAGTTTCTCGGACACATAGTGCTCGCC
AGTGGCGGTTCTCGATTGCTCGGCGAACTGTGGACCGTATTTGGTCACAA
ATATGTCCGATATGATCTTCAGCTCGGCTATATCGCTCTGTAGGCGGGGA
CACACCCAAA
BS04672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-PA | 1254 | CG10103-RA | 311..1254 | 960..17 | 4720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-RA | 1605 | CG10103-RA | 404..1348 | 960..16 | 4725 | 100 | Minus |
| CG10103-RE | 1506 | CG10103-RE | 404..1066 | 960..298 | 3315 | 100 | Minus |
| CG10103-RF | 1189 | CG10103-RF | 404..1065 | 960..299 | 3310 | 100 | Minus |
| CG10103-RE | 1506 | CG10103-RE | 1065..1249 | 200..16 | 925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6755420..6756030 | 350..960 | 3055 | 100 | Plus |
| 3L | 28110227 | 3L | 6754274..6754496 | 16..238 | 1115 | 100 | Plus |
| 3L | 28110227 | 3L | 6754745..6754808 | 236..299 | 320 | 100 | Plus |
| 3L | 28110227 | 3L | 6755073..6755123 | 299..349 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:26:52 has no hits.
BS04672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:37 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-PA | 314..1254 | 17..957 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:00 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-PA | 314..1254 | 17..957 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:25:51 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 407..1357 | 6..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:06 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 407..1357 | 6..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:06 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6754265..6754493 | 6..235 | 98 | <- | Plus |
| 3L | 6754745..6754807 | 236..298 | 100 | <- | Plus |
| 3L | 6755073..6755123 | 299..349 | 100 | <- | Plus |
| 3L | 6755420..6756027 | 350..957 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:25:51 Download gff for
BS04672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6747365..6747593 | 6..235 | 98 | <- | Plus |
| arm_3L | 6747845..6747907 | 236..298 | 100 | <- | Plus |
| arm_3L | 6748173..6748223 | 299..349 | 100 | <- | Plus |
| arm_3L | 6748520..6749127 | 350..957 | 100 | | Plus |
BS04672.5prime Sequence
899 bp (777 high quality bases) assembled on 2005-11-29
> BS04672.5prime
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCAATCAGCCCGCCACGCATGCAGTCCTGCCTGCCAAAT
BS04672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-PA | 1254 | CG10103-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-RF | 1189 | CG10103-RF | 94..976 | 17..899 | 4370 | 99.8 | Plus |
| CG10103-RE | 1506 | CG10103-RE | 94..976 | 17..899 | 4370 | 99.8 | Plus |
| CG10103-RD | 1491 | CG10103-RD | 94..976 | 17..899 | 4370 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6755458..6756161 | 899..196 | 3475 | 99.6 | Minus |
| 3L | 28110227 | 3L | 6756222..6756404 | 199..17 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:58:12 has no hits.
BS04672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:38 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:01 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:00 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RD | 87..976 | 10..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:54 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RD | 87..976 | 10..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:54 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6755458..6756158 | 199..899 | 99 | <- | Minus |
| 3L | 6756223..6756411 | 10..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:00 Download gff for
BS04672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6748558..6749258 | 199..899 | 99 | <- | Minus |
| arm_3L | 6749323..6749511 | 10..198 | 98 | | Minus |
BS04672.complete Sequence
1286 bp (1286 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635000
> BS04672.complete
GAAGTTATCAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGA
AGACCAATCTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAG
AAGGCGGAGCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGC
CACGGGCAAAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGG
AGGACTACTTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTG
TTGCTCGCCAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGG
GATCGCTGAGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGA
GCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATAC
GGTCCACAGTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGT
GTCCGAGAAACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTT
TGGTGGAGAATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATAC
GAACCGGATCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCT
GATTGACCTCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCG
GCGGTGGTGCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATG
CCAGCACTGCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTA
CCCACCCTTCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTG
GTGCATATGCTCTACCCCATCCCGTGCAGGCACCGCCGCCGTTTGCCTAC
AATATACCGCCCAATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAAATG
TGCCGAGGAGAAGGATCTGAACACCAACTTTATCGATCGTGAAGCGAACA
ACACGGATGGCTCGGGCAGCCCGGATGAGAATATTTTGCGCCCCAAACCC
GAAAATGATCCGCCGCCGCGTTACACCTCCATTAATCCTGTAAATCTCCA
GAATGCCAACAAACCGAAACCACAACCCCGATCCAAGCTGCCACCGGGTA
ATCCCACGCTACCAAGTGCTCCTCCGGCATTGGACTTCCCCTCGCTGCCC
AACGTTCCCAACGATCTGCCAGATATTCCGGGCGCAGGTGCCGAGAAGAA
GAACGACGAGGATGAGATTGATTTCGATGACCTGTCACGTCGCTTCGAGA
ACCTTAAGAAGCGAAAGTAAAAGCTTTCTAGACCAT
BS04672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-RA | 1254 | CG10103-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| CG10103-RE | 1155 | CG10103-PE | 1..973 | 17..989 | 4865 | 100 | Plus |
| CG10103-RF | 984 | CG10103-PF | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG10103-RE | 1155 | CG10103-PE | 972..1155 | 1087..1270 | 920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-RA | 1605 | CG10103-RA | 94..1348 | 17..1271 | 6275 | 100 | Plus |
| CG10103-RE | 1506 | CG10103-RE | 94..1066 | 17..989 | 4865 | 100 | Plus |
| CG10103-RF | 1189 | CG10103-RF | 94..1065 | 17..988 | 4860 | 100 | Plus |
| CG10103-RE | 1506 | CG10103-RE | 1065..1249 | 1087..1271 | 925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6755420..6756161 | 937..196 | 3710 | 100 | Minus |
| 3L | 28110227 | 3L | 6754274..6754496 | 1271..1049 | 1115 | 100 | Minus |
| 3L | 28110227 | 3L | 6756222..6756404 | 199..17 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 6754745..6754808 | 1051..988 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 6755073..6755123 | 988..938 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:29:06 has no hits.
BS04672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:46 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 1..1254 | 17..1270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:56 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 109..1379 | 10..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:15 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 101..1345 | 24..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:46 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 109..1379 | 10..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:36 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 101..1345 | 24..1268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:36 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6755073..6755123 | 938..988 | 100 | <- | Minus |
| 3L | 6754277..6754493 | 1052..1268 | 100 | <- | Minus |
| 3L | 6754745..6754807 | 989..1051 | 100 | <- | Minus |
| 3L | 6755420..6756158 | 199..937 | 100 | <- | Minus |
| 3L | 6756223..6756397 | 24..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:15 Download gff for
BS04672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6748173..6748223 | 938..988 | 100 | <- | Minus |
| arm_3L | 6747377..6747593 | 1052..1268 | 100 | <- | Minus |
| arm_3L | 6747845..6747907 | 989..1051 | 100 | <- | Minus |
| arm_3L | 6748520..6749258 | 199..937 | 100 | <- | Minus |
| arm_3L | 6749323..6749497 | 24..198 | 100 | | Minus |
BS04672.pep Sequence
Translation from 16 to 1269
> BS04672.pep
MFSSGPNYNKLKTNLRLALNRLKLLEKKKAELTQKSRKEIADYLATGKTE
RARIRVEHIIREDYLVEAMEMVEMYCDLLLARFGLITQMKELDTGIAEPV
ASLVWVCPRLQSDIAELKIISDIFVTKYGPQFAEQSRTATGEHYVSEKLM
HKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLIDLSD
RNNLSGGGGAGGGGAAPPQMGFIGYPAMPALPDMPMPPSAKPFNYPPFGG
GGGGGGGGAPAGAYALPHPVQAPPPFAYNIPPNQPPTHAVLPAKCAEEKD
LNTNFIDREANNTDGSGSPDENILRPKPENDPPPRYTSINPVNLQNANKP
KPQPRSKLPPGNPTLPSAPPALDFPSLPNVPNDLPDIPGAGAEKKNDEDE
IDFDDLSRRFENLKKRK*
BS04672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-PA | 417 | CG10103-PA | 1..417 | 1..417 | 2221 | 100 | Plus |
| CG10103-PB | 400 | CG10103-PB | 1..400 | 1..417 | 2104 | 95.9 | Plus |
| CG10103-PC | 396 | CG10103-PC | 1..396 | 1..417 | 2070 | 95 | Plus |
| CG10103-PE | 384 | CG10103-PE | 1..384 | 1..417 | 1992 | 92.1 | Plus |
| CG10103-PD | 379 | CG10103-PD | 1..379 | 1..417 | 1964 | 90.9 | Plus |
