Clone BS04674 Report

Search the DGRC for BS04674

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG7341-RA
Protein status:BS04674.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04674.3prime Sequence

867 bp (847 high quality bases) assembled on 2005-12-02

> BS04674.3prime
ATGGTCTAGAAAGCTTCTAATTCGAACTACTGCTTTCGTCGCCATCGTTC
ACAAATTCAAAGGCCCTTCTGGACCGGAAAGCGTGATAGGGTCCTTGCTT
CGGCTGTCCTGCTTGAAATTCACTCCTAATCCTTGAGACCACTGCACCAC
TCTGCGGTGAATAGTTTGCCTTGAAGATCTTTAGGAATGACGGAATGGGA
GGCACAATGCCATCCGTATGAAACTGAACAATCCCCTGGATGTGTTGAGG
TCGCAAGAGGCTGCATAGCTGCCGAAGATGCATCCTGGTCGGAGTCGGTG
TCCACTTTAGTTCCTTTAGATCCAAGGAAACTACCTTTTGATAGTGATTA
AAGTCCGTCGGGCAACCGCTGACGAAAACCCTTGGTACATAATTTTCCTC
CAGAAAACGCTCCAGATCGATGCTAAGGCACTCATAGCTTTTTGCAATGT
GGTCGCCCAAATGAATATGCCCGCGAAGACTTGTGTGTGCCAATCTCCAT
AACATTTCCTCGTAGCCAAATTTTGGCACTTTCAGGTGCACCATACTCTG
GTCATTTCTTGCTCCGAGATCCTCGATGAAATGTGCCATCTCATCAAAAT
CAATATGATCAAACGGCAAATTTACAGAGGACAGATTCAGATACAGCTGC
TCGGTTCCCTGGGCGATCCAAGAGTTGAAGACAGAGTTGCCCAGTAGACG
ACCAAGATTATCCAGCCTCATAGCCGAGTAGCAGTACAGCAATCTGTTAC
CCTGCTGCCGCCGGATAAGCAGAATGAGGCTGTGTCCCAGATGACTTCCA
GAGCATAGCATCCCTTCCAACCGTTTTCCGTCTTTCAGAAGCAGTGCGAA
GGGCTGGCCCTCCTCAC

BS04674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-PA 1074 CG7341-RA 226..1074 865..17 4245 100 Minus
CG7341-PB 1074 CG7341-RB 226..1074 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-RB 1455 CG7341-RB 494..1342 865..17 4245 100 Minus
CG7341-RA 1436 CG7341-RA 475..1323 865..17 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18120042..18120890 865..17 4245 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:18:06 has no hits.

BS04674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:41 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-PB 223..1074 17..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:05 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-PB 223..1074 17..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:00 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 472..1326 11..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:56 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 472..1326 11..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:56 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18120039..18120893 11..867 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:00 Download gff for BS04674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18113139..18113993 11..867 99   Minus

BS04674.5prime Sequence

896 bp (864 high quality bases) assembled on 2005-11-29

> BS04674.5prime
GAAGTTATCAGTCGACATGCGACCCAAGGATCACCCTGATCTGCACTTCG
ACGTGATTCCCAAGCTCTACGATGCCCATTCCAAGGTGTTTCTAACCAGC
TTGTGCGATGTGGATGAGCAGCTGAAACTATTGCCACGCCGATTCTGTCG
GATGTACACCACTCGGCCACTGGCCACCCAGCTGTTTCAGTATCTGCAAT
CCCGCAAAGCGAACGTTTCGGAACAGGACTTCCTTGTGGTGGAGGAGGGC
CAGCCCTTCGCACTGCTTCTGAAAGACGGAAAACGGTTGGAAGGGATGCT
ATGCTCTGGAAGTCATCTGGGACACAGCCTCATTCTGCTTATCCGGCGGC
AGCAGGGTAACAGATTGCTGTACTGCTACTCGGCTATGAGGCTGGATAAT
CTTGGTCGTCTACTGGGCAACTCTGTCTTCAACTCTTGGATCGCCCAGGG
AACCGAGCAGCTGTATCTGAATCTGTCCTCTGTAAATTTGCCGTTTGATC
ATATTGATTTTGATGAGATGGCACATTTCATCGAGGATCTCGGAGCAAGA
AATGACCAGAGTATGGTGCACCTGAAAGTGCCAAAATTTGGCTACGAGGA
AATGTTATGGAGATTGGCACACACAAGTCTTCGCGGGCATATTCATTTGG
GCGACCACATTGCAAAAAGCTATGAGTGCCTTAGCATCGATCTGGAGCGT
TTTCTGGAGGAAAATTATGTACCAAGGGTTTTCGTCAGCGGTTGCCCGAC
GGACTTTAATCACTATCAAAAGGTAGTTTCCTTGGATCTAAAGGAACTAA
AGTGGACACCGACTCCGACCAGGATGCATCTTCGGCAGCTATGCAGCCTC
TTGCGACCTCACACATCCAGGGGATTGTTCAGTTTCATACGGATGG

BS04674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-PA 1074 CG7341-RA 1..845 17..861 4225 100 Plus
CG7341-PB 1074 CG7341-RB 1..845 17..861 4225 100 Plus
CG7341-PA 1074 CG7341-RA 846..881 861..896 180 100 Plus
CG7341-PB 1074 CG7341-RB 846..881 861..896 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-RB 1455 CG7341-RB 269..1149 17..896 4380 99.9 Plus
CG7341-RA 1436 CG7341-RA 250..1130 17..896 4380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18119817..18120697 17..896 4355 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 06:29:03 has no hits.

BS04674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:42 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-PB 1..881 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:07 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-PB 1..881 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:04 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 242..1130 8..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:03 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 242..1130 8..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:03 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18119809..18120697 8..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:04 Download gff for BS04674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18112909..18113797 8..896 99   Plus

BS04674.complete Sequence

1106 bp (1106 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635001

> BS04674.complete
GAAGTTATCAGTCGACATGCGACCCAAGGATCACCCTGATCTGCACTTCG
ACGTGATTCCCAAGCTCTACGATGCCCATTCCAAGGTGTTTCTAACCAGC
TTGTGCGATGTGGATGAGCAGCTGAAACTATTGCCACGCCGATTCTGTCG
GATGTACACCACTCGGCCACTGGCCACCCAGCTGTTTCAGTATCTGCAAT
CCCGCAAAGCGAACGTTTCGGAACAGGACTTCCTTGTGGTGGAGGAGGGC
CAGCCCTTCGCACTGCTTCTGAAAGACGGAAAACGGTTGGAAGGGATGCT
ATGCTCTGGAAGTCATCTGGGACACAGCCTCATTCTGCTTATCCGGCGGC
AGCAGGGTAACAGATTGCTGTACTGCTACTCGGCTATGAGGCTGGATAAT
CTTGGTCGTCTACTGGGCAACTCTGTCTTCAACTCTTGGATCGCCCAGGG
AACCGAGCAGCTGTATCTGAATCTGTCCTCTGTAAATTTGCCGTTTGATC
ATATTGATTTTGATGAGATGGCACATTTCATCGAGGATCTCGGAGCAAGA
AATGACCAGAGTATGGTGCACCTGAAAGTGCCAAAATTTGGCTACGAGGA
AATGTTATGGAGATTGGCACACACAAGTCTTCGCGGGCATATTCATTTGG
GCGACCACATTGCAAAAAGCTATGAGTGCCTTAGCATCGATCTGGAGCGT
TTTCTGGAGGAAAATTATGTACCAAGGGTTTTCGTCAGCGGTTGCCCGAC
GGACTTTAATCACTATCAAAAGGTAGTTTCCTTGGATCTAAAGGAACTAA
AGTGGACACCGACTCCGACCAGGATGCATCTTCGGCAGCTATGCAGCCTC
TTGCGACCTCAACACATCCAGGGGATTGTTCAGTTTCATACGGATGGCAT
TGTGCCTCCCATTCCGTCATTCCTAAAGATCTTCAAGGCAAACTATTCAC
CGCAGAGTGGTGCAGTGGTCTCAAGGATTAGGAGTGAATTTCAAGCAGGA
CAGCCGAAGCAAGGACCCTATCACGCTTTCCGGTCCAGAAGGGCCTTTGA
ATTTGTGAACGATGGCGACGAAAGCAGTAGTTCGAATTAGAAGCTTTCTA
GACCAT

BS04674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-RB 1074 CG7341-PB 1..1074 17..1090 5370 100 Plus
CG7341-RA 1074 CG7341-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-RB 1455 CG7341-RB 269..1342 17..1090 5370 100 Plus
CG7341-RA 1436 CG7341-RA 250..1323 17..1090 5370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18119817..18120890 17..1090 5370 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:28:15 has no hits.

BS04674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:33 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
CG7341-RB 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:41 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
CG7341-RB 255..1339 8..1096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:03 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 250..1323 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:33 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
CG7341-RB 255..1339 8..1096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:02 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
CG7341-RA 250..1323 17..1090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:02 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18119817..18120890 17..1090 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:03 Download gff for BS04674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18112917..18113990 17..1090 100   Plus

BS04674.pep Sequence

Translation from 16 to 1089

> BS04674.pep
MRPKDHPDLHFDVIPKLYDAHSKVFLTSLCDVDEQLKLLPRRFCRMYTTR
PLATQLFQYLQSRKANVSEQDFLVVEEGQPFALLLKDGKRLEGMLCSGSH
LGHSLILLIRRQQGNRLLYCYSAMRLDNLGRLLGNSVFNSWIAQGTEQLY
LNLSSVNLPFDHIDFDEMAHFIEDLGARNDQSMVHLKVPKFGYEEMLWRL
AHTSLRGHIHLGDHIAKSYECLSIDLERFLEENYVPRVFVSGCPTDFNHY
QKVVSLDLKELKWTPTPTRMHLRQLCSLLRPQHIQGIVQFHTDGIVPPIP
SFLKIFKANYSPQSGAVVSRIRSEFQAGQPKQGPYHAFRSRRAFEFVNDG
DESSSSN*

BS04674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7341-PB 357 CG7341-PB 1..357 1..357 1893 100 Plus
CG7341-PA 357 CG7341-PA 1..357 1..357 1893 100 Plus