Clone BS04675 Report

Search the DGRC for BS04675

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ad1-RA
Protein status:BS04675.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04675.5prime Sequence

819 bp (816 high quality bases) assembled on 2005-12-02

> BS04675.5prime
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGCA

BS04675.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2110-PA 1551 Cyp4ad1-RA 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1698 CG2110-RA 54..857 16..819 4020 100 Plus
Cyp4ad1-RB 1227 CG2110-RB 204..452 571..819 1245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8441382..8441664 572..290 1415 100 Minus
2R 25286936 2R 8442587..8442753 182..16 835 100 Minus
2R 25286936 2R 8440571..8440697 769..643 635 100 Minus
2R 25286936 2R 8441715..8441825 292..182 555 100 Minus
2R 25286936 2R 8440755..8440825 642..572 355 100 Minus
2R 25286936 2R 8440462..8440512 819..769 255 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:20:47 has no hits.

BS04675.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:45 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:10 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:17:32 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 54..856 16..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:02 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 54..856 16..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:02 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8440463..8440511 770..818 100 <- Minus
2R 8440571..8440697 643..769 100 <- Minus
2R 8440755..8440824 573..642 100 <- Minus
2R 8441382..8441661 293..572 100 <- Minus
2R 8441715..8441824 183..292 100 <- Minus
2R 8442587..8442753 16..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:17:32 Download gff for BS04675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4327968..4328016 770..818 100 <- Minus
arm_2R 4328076..4328202 643..769 100 <- Minus
arm_2R 4328260..4328329 573..642 100 <- Minus
arm_2R 4328887..4329166 293..572 100 <- Minus
arm_2R 4329220..4329329 183..292 100 <- Minus
arm_2R 4330092..4330258 16..182 100   Minus

BS04675.3prime Sequence

863 bp (861 high quality bases) assembled on 2005-12-02

> BS04675.3prime
ATGGTCTAGAAAGCTTTCATCGCTTTCTAAGCCTAATCTGGATACCATTT
TCCGATTTAAGCGTGACACGAATATTCAACACAGGATCGTACTCGCTCTG
TGGGACACAATCCTCGCGGGAATGGTCGTTAATTCCCGGAGGAAGTCCAT
CCACGGCAGGCAGAATTTCAAAGCGGCGCAGCAATTGGGACAGCAAAGCC
TTCATCTGGTACATGGCGAACTTCTCGGCAATGCAGCGCCTTGGACCTGC
ACTAAATGGAACGCTCTTGAAAGCCTCGATGCCCACGTTTCCAGTTGGGT
TCTCGAATCTCTCTGGCCGGAATGTGCATGGATCGTCGAAGTACTTTTCG
TTGTAGCCCATGGCAATGAGGCACATGATCACCGTGGTGCACTTGGCCAC
CTTGGTGCCATTGATATCGATGGGATTGCGGTTTGTTCGAGCAATCAGTG
GGACAGAAGGGTACAAGCGCAGGGTCTCCCTAATAATCAACTCTAGATAA
TGCATCTGATCCAGCCGAGCCAAGTCCGCTTCCCCCGCGAAGTTCTCGCC
AAAGATGCGTCGCTGTTCCTCGGCAGCTTTTTGCTGAATCTCCGAGTGAC
GGGAAAGGGTGTACAGCGTGAAAGATATGGCGGCGGCAATGGGATCGTGA
CCTGTAAATATAAATGTGGACACTTCCTCGATAATCTCGCGCTCCTTGAG
GACTTTCCCATCGAGCTTGGCGGTCAGCAGGACGTCCAGGAAGGGTTTGT
TGATTGGCTGGCCCTGCTGGCACGTGTTTTCCGCAGCCAACTGGTGTCGC
CGTTGCGAGATAATCCGATTCAGTTCGCTGCGCAGGAGCGACAGAGCGCG
GCGCTGCTTCATG

BS04675.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2110-PA 1551 Cyp4ad1-RA 705..1551 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RB 1227 CG2110-RB 354..1201 863..16 4240 100 Minus
Cyp4ad1-RA 1698 CG2110-RA 759..1606 863..16 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8439992..8440232 412..652 1205 100 Plus
2R 25286936 2R 8439487..8439700 16..229 1070 100 Plus
2R 25286936 2R 8439755..8439937 229..411 915 100 Plus
2R 25286936 2R 8440349..8440512 652..815 820 100 Plus
2R 25286936 2R 8440571..8440619 815..863 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:24:25 has no hits.

BS04675.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:44 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 705..1551 17..863 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:08 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2110-PA 705..1551 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:25:23 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 759..1608 11..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:35 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 759..1608 11..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:35 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8439992..8440232 412..652 100 <- Plus
2R 8440350..8440511 653..814 100 <- Plus
2R 8440571..8440619 815..863 100   Plus
2R 8439755..8439937 229..411 100 <- Plus
2R 8439485..8439699 11..228 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:25:23 Download gff for BS04675.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4326990..4327204 11..228 98 <- Plus
arm_2R 4327260..4327442 229..411 100 <- Plus
arm_2R 4327497..4327737 412..652 100 <- Plus
arm_2R 4327855..4328016 653..814 100 <- Plus
arm_2R 4328076..4328124 815..863 100   Plus

BS04675.complete Sequence

1583 bp (1583 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635002

> BS04675.complete
GAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATTTTGGCCA
CCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGACCACATG
GCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCTTCGTGGG
TAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAAAAGGTCC
TGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCTGGTCTTC
CTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGAACATCCT
GTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTTCTGAGGC
CCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTGGCTAAAG
CACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCGAGGGTTA
CCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAACTCGACG
TACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGTGGCTAAG
TGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACAGCAGCTC
ACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGACTTATGCG
ATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGACGCCCTC
TTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGTCGCTCCT
GCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAGTTGGCTG
CGGAAAACACGTGCCAGCAGGGCCAGCCAATCAACAAACCCTTCCTGGAC
GTCCTGCTGACCGCCAAGCTCGATGGGAAAGTCCTCAAGGAGCGCGAGAT
TATCGAGGAAGTGTCCACATTTATATTTACAGGTCACGATCCCATTGCCG
CCGCCATATCTTTCACGCTGTACACCCTTTCCCGTCACTCGGAGATTCAG
CAAAAAGCTGCCGAGGAACAGCGACGCATCTTTGGCGAGAACTTCGCGGG
GGAAGCGGACTTGGCTCGGCTGGATCAGATGCATTATCTAGAGTTGATTA
TTAGGGAGACCCTGCGCTTGTACCCTTCTGTCCCACTGATTGCTCGAACA
AACCGCAATCCCATCGATATCAATGGCACCAAGGTGGCCAAGTGCACCAC
GGTGATCATGTGCCTCATTGCCATGGGCTACAACGAAAAGTACTTCGACG
ATCCATGCACATTCCGGCCAGAGAGATTCGAGAACCCAACTGGAAACGTG
GGCATCGAGGCTTTCAAGAGCGTTCCATTTAGTGCAGGTCCAAGGCGCTG
CATTGCCGAGAAGTTCGCCATGTACCAGATGAAGGCTTTGCTGTCCCAAT
TGCTGCGCCGCTTTGAAATTCTGCCTGCCGTGGATGGACTTCCTCCGGGA
ATTAACGACCATTCCCGCGAGGATTGTGTCCCACAGAGCGAGTACGATCC
TGTGTTGAATATTCGTGTCACGCTTAAATCGGAAAATGGTATCCAGATTA
GGCTTAGAAAGCGATGAAAGCTTTCTAGACCAT

BS04675.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1551 CG2110-PA 1..1551 17..1567 7755 100 Plus
Cyp4ad1-RB 846 CG2110-PB 1..846 722..1567 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-RA 1698 CG2110-RA 54..1606 16..1568 7765 100 Plus
Cyp4ad1-RB 1227 CG2110-RB 204..1201 571..1568 4990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8441382..8441664 572..290 1415 100 Minus
2R 25286936 2R 8439992..8440232 1172..932 1205 100 Minus
2R 25286936 2R 8439487..8439700 1568..1355 1070 100 Minus
2R 25286936 2R 8439755..8439937 1355..1173 915 100 Minus
2R 25286936 2R 8442587..8442753 182..16 835 100 Minus
2R 25286936 2R 8440349..8440512 932..769 820 100 Minus
2R 25286936 2R 8440571..8440697 769..643 635 100 Minus
2R 25286936 2R 8441715..8441825 292..182 555 100 Minus
2R 25286936 2R 8440755..8440825 642..572 355 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:32:24 has no hits.

BS04675.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:34 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:42 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 27..1581 16..1573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:14 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 61..1604 23..1566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:35 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 27..1581 16..1573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:16 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ad1-RA 61..1604 23..1566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:16 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8439489..8439699 1356..1566 100 <- Minus
2R 8439755..8439937 1173..1355 100 <- Minus
2R 8439992..8440232 932..1172 100 <- Minus
2R 8440350..8440511 770..931 100 <- Minus
2R 8440571..8440697 643..769 100 <- Minus
2R 8440755..8440824 573..642 100 <- Minus
2R 8441382..8441661 293..572 100 <- Minus
2R 8441715..8441824 183..292 100 <- Minus
2R 8442587..8442746 23..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:14 Download gff for BS04675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4326994..4327204 1356..1566 100 <- Minus
arm_2R 4327260..4327442 1173..1355 100 <- Minus
arm_2R 4327497..4327737 932..1172 100 <- Minus
arm_2R 4327855..4328016 770..931 100 <- Minus
arm_2R 4328076..4328202 643..769 100 <- Minus
arm_2R 4328260..4328329 573..642 100 <- Minus
arm_2R 4328887..4329166 293..572 100 <- Minus
arm_2R 4329220..4329329 183..292 100 <- Minus
arm_2R 4330092..4330251 23..182 100   Minus

BS04675.pep Sequence

Translation from 16 to 1566

> BS04675.pep
MFLIAIAIILATILVFKGVRIFNYIDHMAGIMEMIPGPTPYPFVGNLFQF
GLKPAEYPKKVLQYCRKYDFQGFRSLVFLQYHMMLSDPAEIQNILSSSSL
LYKEHLYSFLRPWLGDGLLTSSGARWLKHQKLYAPAFERSAIEGYLRVVH
RTGGQFVQKLDVLSDTQEVFDAQELVAKCTLDIVCENATGQDSSSLNGET
SDLHGAIKDLCDVVQERTFSIVKRFDALFRLTSYYMKQRRALSLLRSELN
RIISQRRHQLAAENTCQQGQPINKPFLDVLLTAKLDGKVLKEREIIEEVS
TFIFTGHDPIAAAISFTLYTLSRHSEIQQKAAEEQRRIFGENFAGEADLA
RLDQMHYLELIIRETLRLYPSVPLIARTNRNPIDINGTKVAKCTTVIMCL
IAMGYNEKYFDDPCTFRPERFENPTGNVGIEAFKSVPFSAGPRRCIAEKF
AMYQMKALLSQLLRRFEILPAVDGLPPGINDHSREDCVPQSEYDPVLNIR
VTLKSENGIQIRLRKR*

BS04675.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ad1-PA 516 CG2110-PA 1..516 1..516 2662 100 Plus
Cyp4ad1-PB 281 CG2110-PB 1..281 236..516 1441 100 Plus
Cyp4e2-PB 526 CG2060-PB 29..525 31..516 861 37.3 Plus
Cyp4e2-PA 526 CG2060-PA 29..525 31..516 861 37.3 Plus
Cyp4e3-PA 526 CG4105-PA 1..524 1..516 844 34.3 Plus