Clone Sequence Records
BS04680.5prime Sequence
872 bp (720 high quality bases) assembled on 2005-12-02
> BS04680.5prime
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTNCACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGG
BS04680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9998-PA | 1251 | U2af50-RA | 1..856 | 17..872 | 4236 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 163..1018 | 17..872 | 4254 | 99.8 | Plus |
| U2af50-RA | 1527 | CG9998-RA | 217..1072 | 17..872 | 4254 | 99.8 | Plus |
| U2af50-RC | 1371 | CG9998-RC | 73..916 | 29..872 | 4194 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16357643..16358207 | 593..29 | 2825 | 100 | Minus |
| X | 23542271 | X | 16357295..16357419 | 805..681 | 599 | 98.4 | Minus |
| X | 23542271 | X | 16357481..16357573 | 685..593 | 465 | 100 | Minus |
| X | 23542271 | X | 16357151..16357219 | 872..804 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:45:41 has no hits.
BS04680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:49 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9998-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:15 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9998-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:41:20 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1072 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:56 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1072 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:56 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16357151..16357217 | 806..872 | 100 | <- | Minus |
| X | 16357295..16357417 | 683..805 | 98 | <- | Minus |
| X | 16357484..16357572 | 594..682 | 100 | <- | Minus |
| X | 16357643..16358206 | 30..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:41:20 Download gff for
BS04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16251184..16251250 | 806..872 | 100 | <- | Minus |
| arm_X | 16251328..16251450 | 683..805 | 98 | <- | Minus |
| arm_X | 16251517..16251605 | 594..682 | 100 | <- | Minus |
| arm_X | 16251676..16252239 | 30..593 | 100 | <- | Minus |
BS04680.3prime Sequence
942 bp (804 high quality bases) assembled on 2005-12-02
> BS04680.3prime
ATGGTCTAGAAAGCTTCTAAAACTCGCGTCTGTGGTATTTGTCGGGATCG
AAATATGATGTGACCACAACGCGGTCGCTGAATTTACGTCCAGTAAGTGC
TTGCTGCGCCTTCTGACAGTCGAGAACCGAGTTGAATTCGACAAAGACCT
TGCCGCAACCGGGAACTTCGACGCCCTCGATGGGACGTGGAATTTCCACG
CTCCGCACGACTCCGTATTTCGTGCACTCCTCCTTGATGTCCTCCAAGAT
GTCCTCGTACTCCTCCTCGTCCCGCAGTTCATCGGGCGTGACCATGTTGA
GCAAGCAAAGAACCTCAGTCGGCGGTCCAGAGGTCACCACATTGGACAGG
CCCGGCACTTGGAGCATTACGGACTGCGTGGTGTTGGCCGCGTTCTGGGC
ATTCTTGGCGCCCACACTGGCTCGTTGGACAATCAGTTTTTTGTCACCCA
GCTGCATTCCATTTAGGCCAGCAATCGACTGATCTGTGATGCTAAGATCG
ACATATTCACAGAAAGCATAACCCTTACTCAACCCAGTAGCGGCATCCTT
AACCAGGTTGAAGGCTCGTAGCTTGCCAAACGACAAAAGCAGTTCCTTAA
CCTGATCGTCATTCAGATAGTTTGGTAGACCTCCGATGAAGATTTTGTGA
GGCGAGTCCGGAACCACTGTCGAAATAACTCCACTGGAAACAACAGCGGG
CTTAATTGCCGGCGTATCTGTTATACCCGGCATGGGCTGGTAATCGTGCG
GACGCCTAATCTTTAAGCTCTGCCCCTTCAAATTGATGCCATCGAATGCC
ATGGCCTGGGTGGTTTCATCAATCGATCGGAATTCGAGGAAAGCAAAGTT
TTTTGTCCAGTTAATTTGGCATGCCAAGACGGGACTGCCGGCCGCCTGGG
CGAGCCCAACTAAATGCATCTGTTGGTTGAAGAACTCCATCA
BS04680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9998-PA | 1251 | U2af50-RA | 415..1251 | 853..17 | 4185 | 100 | Minus |
| CG9998-PA | 1251 | U2af50-RA | 326..409 | 942..859 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 488..1414 | 942..16 | 4590 | 99.8 | Minus |
| U2af50-RC | 1371 | CG9998-RC | 386..1312 | 942..16 | 4590 | 99.8 | Minus |
| U2af50-RB | 1344 | CG9998-RB | 359..1285 | 942..16 | 4590 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16356755..16357219 | 16..480 | 2325 | 100 | Plus |
| X | 23542271 | X | 16357643..16357894 | 691..942 | 1200 | 98.4 | Plus |
| X | 23542271 | X | 16357295..16357419 | 479..603 | 625 | 100 | Plus |
| X | 23542271 | X | 16357481..16357573 | 599..691 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:17:49 has no hits.
BS04680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:48 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9998-PA | 327..1251 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:13 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9998-PA | 327..1251 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:58 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RB | 360..1285 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:15 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RB | 360..1285 | 16..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:15 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16357643..16357893 | 691..941 | 99 | | Plus |
| X | 16356755..16357217 | 16..478 | 100 | <- | Plus |
| X | 16357295..16357417 | 479..601 | 100 | <- | Plus |
| X | 16357484..16357572 | 602..690 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:58 Download gff for
BS04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16250788..16251250 | 16..478 | 100 | <- | Plus |
| arm_X | 16251328..16251450 | 479..601 | 100 | <- | Plus |
| arm_X | 16251517..16251605 | 602..690 | 100 | <- | Plus |
| arm_X | 16251676..16251926 | 691..941 | 99 | | Plus |
BS04680.complete Sequence
1283 bp (1283 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635003
> BS04680.complete
GAAGTTATCAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGA
GACGCCGACATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGG
GATCGACGCCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGA
TGTACCGCCGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCA
TGCAGGCGTCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAA
ACGGCAGTGCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCT
GTACGTTGGCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGT
TCTTCAACCAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGT
CCCGTCTTGGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGA
ATTCCGATCGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCA
ATTTGAAGGGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCC
ATGCCGGGTATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAG
TGGAGTTATTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCG
GAGGTCTACCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTG
TCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGG
GTTGAGTAAGGGTTATGCTTTCTGTGAATATGTCGATCTTAGCATCACAG
ATCAGTCGATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTG
ATTGTCCAACGAGCCAGTGTGGGCGCCAAGAATGCCCAGAACGCGGCCAA
CACCACGCAGTCCGTAATGCTCCAAGTGCCGGGCCTGTCCAATGTGGTGA
CCTCTGGACCGCCGACTGAGGTTCTTTGCTTGCTCAACATGGTCACGCCC
GATGAACTGCGGGACGAGGAGGAGTACGAGGACATCTTGGAGGACATCAA
GGAGGAGTGCACGAAATACGGAGTCGTGCGGAGCGTGGAAATTCCACGTC
CCATCGAGGGCGTCGAAGTTCCCGGTTGCGGCAAGGTCTTTGTCGAATTC
AACTCGGTTCTCGACTGTCAGAAGGCGCAGCAAGCACTTACTGGACGTAA
ATTCAGCGACCGCGTTGTGGTCACATCATATTTCGATCCCGACAAATACC
ACAGACGCGAGTTTTAGAAGCTTTCTAGACCAT
BS04680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1251 | CG9998-PD | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| U2af50-RA | 1251 | CG9998-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
| U2af50-RB | 1284 | CG9998-PB | 46..1284 | 29..1267 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 163..1414 | 17..1268 | 6260 | 100 | Plus |
| U2af50-RA | 1527 | CG9998-RA | 217..1468 | 17..1268 | 6260 | 100 | Plus |
| U2af50-RC | 1371 | CG9998-RC | 73..1312 | 29..1268 | 6200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16357643..16358207 | 593..29 | 2825 | 100 | Minus |
| X | 23542271 | X | 16356755..16357219 | 1268..804 | 2325 | 100 | Minus |
| X | 23542271 | X | 16357295..16357419 | 805..681 | 625 | 100 | Minus |
| X | 23542271 | X | 16357481..16357573 | 685..593 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:24 has no hits.
BS04680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:35 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:44 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1468 | 9..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:26 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 217..1467 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:36 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1468 | 9..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:29 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 217..1467 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:29 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16356756..16357217 | 806..1267 | 100 | <- | Minus |
| X | 16357295..16357417 | 683..805 | 100 | <- | Minus |
| X | 16357484..16357572 | 594..682 | 100 | <- | Minus |
| X | 16357643..16358206 | 30..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:26 Download gff for
BS04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16250789..16251250 | 806..1267 | 100 | <- | Minus |
| arm_X | 16251328..16251450 | 683..805 | 100 | <- | Minus |
| arm_X | 16251517..16251605 | 594..682 | 100 | <- | Minus |
| arm_X | 16251676..16252239 | 30..593 | 100 | <- | Minus |
BS04680.pep Sequence
Translation from 16 to 1266
> BS04680.pep
MGYDDRERDRERRRHRSRSRDRHRERSRDRRHHRNSRRKPSLYWDVPPPG
FEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNI
PFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSID
ETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST
VVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGY
AFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSV
MLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTK
YGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRV
VVTSYFDPDKYHRREF*
BS04680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-PD | 416 | CG9998-PD | 1..416 | 1..416 | 2163 | 100 | Plus |
| U2af50-PA | 416 | CG9998-PA | 1..416 | 1..416 | 2163 | 100 | Plus |
| U2af50-PB | 427 | CG9998-PB | 16..427 | 5..416 | 2139 | 100 | Plus |
| U2af50-PC | 360 | CG9998-PC | 1..360 | 57..416 | 1846 | 100 | Plus |
| LS2-PA | 449 | CG3162-PA | 15..443 | 6..411 | 1129 | 55.1 | Plus |
