Clone Sequence Records
BS04681.3prime Sequence
822 bp (820 high quality bases) assembled on 2005-12-02
> BS04681.3prime
ATGGTCTAGAAAGCTTTTATCCCAGGTGCATCAGGCTCGGATGGAAGTAC
CCGGCCATGGCCCACTGGGCACCAGGTGCTCCTCGGCCCAGCGCCGCCAT
CTTGATCTTCTCGATCTCGGCCTCCTGGAGACGCTTGGCCTTGGCCCTTC
GGTTCTGGAACCAGATCTTCACCTGCGTCTCCGTCAGCCGCAGCGAGGAG
GAGAACTCCGCCCGTTCGGCGATGCTCAGGTACTGCTTCTCCCGGAACTT
CTTCTCCAGCGAGAGCAGCTGCTGTGTTGTGAAGGGGGTGCGGGGCTTCC
GGTTGGGCTTGTGCTTCCGCAGGTTGCACTTGATCCGCGGCGGTTCGTTG
GCATCTCCACCGAATCCTGCTCCCGGAAACATGCCAGGCGGTCCGAAGGG
CGGCATTTGTCTGGTTCCTGGCCACGGAACTCCACCGCCCATTCCCGTCC
AGGCCACCGCCGCGGCGGCCAGTGCACTGAAGGGGGTCGGGCGGATGGGC
ACATGACCGGAGGCCAGGGCCGCCGGGGAAAGTATCGTGGATTGCATGTG
AGAGCCCGGCGGCGGACCGTGCGGCGATTCCAGCGACTTGCCGCTGCCGT
CGAGGCCGTCGGGCGTGGAGCGCGGCGAGTCGTCGGCGTTCATGTCCTCG
ATATCCACAATGGAGTCCTCCTCCTCGTCGTGATCGGCCTCGTGGTCCTG
CAGCATCTCCTCGTCGTACTCCAGCTCGGAGTCCGTGTGGCTGCCCAGCG
GCGAATGGCGTTCATTTTTGGCGGGAGTGGAGGCCACATTGCCCTGCGAT
CCCAGTGCGGATCCCAGTGGCG
BS04681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1897-PA | 1548 | Dr-RA | 743..1548 | 822..17 | 4030 | 100 | Minus |
CG5832-PA | 792 | Hmx-RA | 521..566 | 198..153 | 180 | 95.6 | Minus |
CG7902-PA | 1149 | bap-RA | 634..677 | 193..150 | 145 | 93.1 | Minus |
CG8254-PA | 1578 | exex-RA | 1438..1466 | 181..153 | 145 | 100 | Minus |
CG10604-PA | 864 | bsh-RA | 517..548 | 181..150 | 135 | 96.8 | Minus |
CG1046-PA | 1062 | zen-RA | 397..423 | 175..149 | 135 | 100 | Minus |
CG10604-PB | 1290 | bsh-RB | 943..974 | 181..150 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dr-RA | 2552 | CG1897-RA | 993..1798 | 822..17 | 4030 | 100 | Minus |
Hmx-RE | 3384 | CG43748-RE | 1942..1987 | 198..153 | 200 | 95.7 | Minus |
Hmx-RD | 2691 | CG43748-RD | 1942..1987 | 198..153 | 200 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29557378..29557845 | 822..355 | 2340 | 100 | Minus |
3R | 32079331 | 3R | 29564151..29564490 | 356..17 | 1700 | 100 | Minus |
3R | 32079331 | 3R | 17567655..17567700 | 198..153 | 200 | 95.7 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:08:28 has no hits.
BS04681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:54:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:16 Download gff for
BS04681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1897-PA | 743..1548 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:04 Download gff for
BS04681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 993..1798 | 17..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:57 Download gff for
BS04681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 993..1798 | 17..822 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:57 Download gff for
BS04681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29557378..29557845 | 355..822 | 100 | -> | Minus |
3R | 29564153..29564490 | 17..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:04 Download gff for
BS04681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25383100..25383567 | 355..822 | 100 | -> | Minus |
arm_3R | 25389875..25390212 | 17..354 | 100 | | Minus |
BS04681.5prime Sequence
882 bp (783 high quality bases) assembled on 2005-12-02
> BS04681.5prime
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGAC
TCCGAGCTGGAGTACGACGAGGAGATGCTGCA
BS04681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1897-PA | 1548 | Dr-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dr-RA | 2552 | CG1897-RA | 251..1116 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29556636..29557501 | 17..882 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:14:18 has no hits.
BS04681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:54:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:17 Download gff for
BS04681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1897-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:40 Download gff for
BS04681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 244..1115 | 10..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:55 Download gff for
BS04681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 244..1115 | 10..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:55 Download gff for
BS04681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29556629..29557500 | 10..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:40 Download gff for
BS04681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25382351..25383222 | 10..881 | 99 | | Plus |
BS04681.complete Sequence
1580 bp (1580 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635004
> BS04681.complete
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGAC
TCCGAGCTGGAGTACGACGAGGAGATGCTGCAGGACCACGAGGCCGATCA
CGACGAGGAGGAGGACTCCATTGTGGATATCGAGGACATGAACGCCGACG
ACTCGCCGCGCTCCACGCCCGACGGCCTCGACGGCAGCGGCAAGTCGCTG
GAATCGCCGCACGGTCCGCCGCCGGGCTCTCACATGCAATCCACGATACT
TTCCCCGGCGGCCCTGGCCTCCGGTCATGTGCCCATCCGCCCGACCCCCT
TCAGTGCACTGGCCGCCGCGGCGGTGGCCTGGACGGGAATGGGCGGTGGA
GTTCCGTGGCCAGGAACCAGACAAATGCCGCCCTTCGGACCGCCTGGCAT
GTTTCCGGGAGCAGGATTCGGTGGAGATGCCAACGAACCGCCGCGGATCA
AGTGCAACCTGCGGAAGCACAAGCCCAACCGGAAGCCCCGCACCCCCTTC
ACAACACAGCAGCTGCTCTCGCTGGAGAAGAAGTTCCGGGAGAAGCAGTA
CCTGAGCATCGCCGAACGGGCGGAGTTCTCCTCCTCGCTGCGGCTGACGG
AGACGCAGGTGAAGATCTGGTTCCAGAACCGAAGGGCCAAGGCCAAGCGT
CTCCAGGAGGCCGAGATCGAGAAGATCAAGATGGCGGCGCTGGGCCGAGG
AGCACCTGGTGCCCAGTGGGCCATGGCCGGGTACTTCCATCCGAGCCTGA
TGCACCTGGGATAAAAGCTTTCTAGACCAT
BS04681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dr-RA | 1548 | CG1897-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Hmx-RE | 1779 | CG43748-PE | 1508..1553 | 1383..1428 | 200 | 95.7 | Plus |
Hmx-RD | 2157 | CG43748-PD | 1508..1553 | 1383..1428 | 200 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dr-RA | 2552 | CG1897-RA | 251..1798 | 17..1564 | 7740 | 100 | Plus |
Hmx-RE | 3384 | CG43748-RE | 1942..1987 | 1383..1428 | 200 | 95.7 | Plus |
Hmx-RD | 2691 | CG43748-RD | 1942..1987 | 1383..1428 | 200 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29556636..29557845 | 17..1226 | 6050 | 100 | Plus |
3R | 32079331 | 3R | 29564151..29564490 | 1225..1564 | 1700 | 100 | Plus |
3R | 32079331 | 3R | 17567655..17567700 | 1383..1428 | 200 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:07:00 has no hits.
BS04681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:37 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 1..1548 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:45 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 243..1797 | 10..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:21 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 256..1796 | 22..1562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:37 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 243..1797 | 10..1564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:18 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dr-RA | 256..1796 | 22..1562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:18 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29556641..29557845 | 22..1226 | 100 | -> | Plus |
3R | 29564153..29564488 | 1227..1562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:21 Download gff for
BS04681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25382363..25383567 | 22..1226 | 100 | -> | Plus |
arm_3R | 25389875..25390210 | 1227..1562 | 100 | | Plus |
BS04681.pep Sequence
Translation from 16 to 1563
> BS04681.pep
MLKLSPASMTVTGLRQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSN
MSSGNMTSSNLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQ
QQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPN
QAADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAVAHHA
HLLQAAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPASTSSTPSSTPL
GSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEED
SIVDIEDMNADDSPRSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAAL
ASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPFGPPGMFPGAG
FGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE
RAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAPGAQ
WAMAGYFHPSLMHLG*
BS04681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dr-PA | 515 | CG1897-PA | 1..515 | 1..515 | 2673 | 100 | Plus |
CG32532-PD | 688 | CG32532-PD | 127..594 | 47..506 | 214 | 24.2 | Plus |
Dbx-PC | 741 | CG42234-PC | 144..497 | 124..484 | 207 | 26 | Plus |
Dll-PB | 322 | CG3629-PB | 1..215 | 308..515 | 201 | 31.9 | Plus |
Dll-PA | 327 | CG3629-PA | 1..215 | 308..515 | 201 | 31.9 | Plus |