Clone BS04681 Report

Search the DGRC for BS04681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptDr-RA
Protein status:BS04681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04681.3prime Sequence

822 bp (820 high quality bases) assembled on 2005-12-02

> BS04681.3prime
ATGGTCTAGAAAGCTTTTATCCCAGGTGCATCAGGCTCGGATGGAAGTAC
CCGGCCATGGCCCACTGGGCACCAGGTGCTCCTCGGCCCAGCGCCGCCAT
CTTGATCTTCTCGATCTCGGCCTCCTGGAGACGCTTGGCCTTGGCCCTTC
GGTTCTGGAACCAGATCTTCACCTGCGTCTCCGTCAGCCGCAGCGAGGAG
GAGAACTCCGCCCGTTCGGCGATGCTCAGGTACTGCTTCTCCCGGAACTT
CTTCTCCAGCGAGAGCAGCTGCTGTGTTGTGAAGGGGGTGCGGGGCTTCC
GGTTGGGCTTGTGCTTCCGCAGGTTGCACTTGATCCGCGGCGGTTCGTTG
GCATCTCCACCGAATCCTGCTCCCGGAAACATGCCAGGCGGTCCGAAGGG
CGGCATTTGTCTGGTTCCTGGCCACGGAACTCCACCGCCCATTCCCGTCC
AGGCCACCGCCGCGGCGGCCAGTGCACTGAAGGGGGTCGGGCGGATGGGC
ACATGACCGGAGGCCAGGGCCGCCGGGGAAAGTATCGTGGATTGCATGTG
AGAGCCCGGCGGCGGACCGTGCGGCGATTCCAGCGACTTGCCGCTGCCGT
CGAGGCCGTCGGGCGTGGAGCGCGGCGAGTCGTCGGCGTTCATGTCCTCG
ATATCCACAATGGAGTCCTCCTCCTCGTCGTGATCGGCCTCGTGGTCCTG
CAGCATCTCCTCGTCGTACTCCAGCTCGGAGTCCGTGTGGCTGCCCAGCG
GCGAATGGCGTTCATTTTTGGCGGGAGTGGAGGCCACATTGCCCTGCGAT
CCCAGTGCGGATCCCAGTGGCG

BS04681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1897-PA 1548 Dr-RA 743..1548 822..17 4030 100 Minus
CG5832-PA 792 Hmx-RA 521..566 198..153 180 95.6 Minus
CG7902-PA 1149 bap-RA 634..677 193..150 145 93.1 Minus
CG8254-PA 1578 exex-RA 1438..1466 181..153 145 100 Minus
CG10604-PA 864 bsh-RA 517..548 181..150 135 96.8 Minus
CG1046-PA 1062 zen-RA 397..423 175..149 135 100 Minus
CG10604-PB 1290 bsh-RB 943..974 181..150 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-RA 2552 CG1897-RA 993..1798 822..17 4030 100 Minus
Hmx-RE 3384 CG43748-RE 1942..1987 198..153 200 95.7 Minus
Hmx-RD 2691 CG43748-RD 1942..1987 198..153 200 95.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29557378..29557845 822..355 2340 100 Minus
3R 32079331 3R 29564151..29564490 356..17 1700 100 Minus
3R 32079331 3R 17567655..17567700 198..153 200 95.7 Minus
Blast to na_te.dros performed on 2015-02-01 09:08:28 has no hits.

BS04681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:54:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:16 Download gff for BS04681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1897-PA 743..1548 17..822 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:04 Download gff for BS04681.3prime
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 993..1798 17..822 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:57 Download gff for BS04681.3prime
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 993..1798 17..822 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:57 Download gff for BS04681.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29557378..29557845 355..822 100 -> Minus
3R 29564153..29564490 17..354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:04 Download gff for BS04681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25383100..25383567 355..822 100 -> Minus
arm_3R 25389875..25390212 17..354 100   Minus

BS04681.5prime Sequence

882 bp (783 high quality bases) assembled on 2005-12-02

> BS04681.5prime
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGAC
TCCGAGCTGGAGTACGACGAGGAGATGCTGCA

BS04681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1897-PA 1548 Dr-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-RA 2552 CG1897-RA 251..1116 17..882 4330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29556636..29557501 17..882 4330 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:14:18 has no hits.

BS04681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:54:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:17 Download gff for BS04681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1897-PA 1..865 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:40 Download gff for BS04681.5prime
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 244..1115 10..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:55 Download gff for BS04681.5prime
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 244..1115 10..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:55 Download gff for BS04681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29556629..29557500 10..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:40 Download gff for BS04681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25382351..25383222 10..881 99   Plus

BS04681.complete Sequence

1580 bp (1580 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635004

> BS04681.complete
GAAGTTATCAGTCGACATGTTAAAGCTCAGCCCAGCGAGCATGACAGTTA
CAGGTCTGCGCCAGACGATGACCAGTCCCACGGTGCCGCCGAGCAGTAAC
ACTCCCGCGGGTAACCTCATCATCACCAGCAGCAGTAGCAACAGCGGCAG
CAACAGCGGCAGCAACATGAGCAGCGGCAACATGACCAGCAGCAACCTGA
CCAACCTGAGTCCTAGCCACCCGGCTGGCCTGAATGCCCTGGCCAGTCCC
ACCTCGCCGTCGGCACTGCTGCTGGCCCATCAGCAGCATCTGCTGCAGCA
GCACCAGCAACACCAGCAGCAGCAGCAACAGCAGCAGCAGGCGGCGGCGC
TCCAGCTGGCCGCAGTGCATCCGCCGGCCCACCATCTGCACAAGACCACC
TCCCGACTGAGCAACTTTAGTGTGGCCTCTCTCCTGGCGGACACGAGGCC
CAGAACGCCACCCAACCAGGCGGCGGATGGACCCCAGAACCTGACCAGTT
CGGCGGCCACCTCGCCCATCTCCCAGGCCAGCAGCACGCCGCCGCCTCCG
CCGGCCAGTGCGGCCGCCCAAGTTCCCGCCAACACCTTCCATCCCGCCGC
CGTCGCGCACCACGCCCACTTGCTGCAGGCCGCCCACGCGGCTGCGGCGG
CACATGCCCAGCACCAGGCGATGGCCGCCCAGCTGCGCCAACAGCAGCAG
CAGGCGGACGCCCGGGCCAACTCGCCACCCGCCTCCACGAGTTCCACGCC
CAGCTCCACGCCACTGGGATCCGCACTGGGATCGCAGGGCAATGTGGCCT
CCACTCCCGCCAAAAATGAACGCCATTCGCCGCTGGGCAGCCACACGGAC
TCCGAGCTGGAGTACGACGAGGAGATGCTGCAGGACCACGAGGCCGATCA
CGACGAGGAGGAGGACTCCATTGTGGATATCGAGGACATGAACGCCGACG
ACTCGCCGCGCTCCACGCCCGACGGCCTCGACGGCAGCGGCAAGTCGCTG
GAATCGCCGCACGGTCCGCCGCCGGGCTCTCACATGCAATCCACGATACT
TTCCCCGGCGGCCCTGGCCTCCGGTCATGTGCCCATCCGCCCGACCCCCT
TCAGTGCACTGGCCGCCGCGGCGGTGGCCTGGACGGGAATGGGCGGTGGA
GTTCCGTGGCCAGGAACCAGACAAATGCCGCCCTTCGGACCGCCTGGCAT
GTTTCCGGGAGCAGGATTCGGTGGAGATGCCAACGAACCGCCGCGGATCA
AGTGCAACCTGCGGAAGCACAAGCCCAACCGGAAGCCCCGCACCCCCTTC
ACAACACAGCAGCTGCTCTCGCTGGAGAAGAAGTTCCGGGAGAAGCAGTA
CCTGAGCATCGCCGAACGGGCGGAGTTCTCCTCCTCGCTGCGGCTGACGG
AGACGCAGGTGAAGATCTGGTTCCAGAACCGAAGGGCCAAGGCCAAGCGT
CTCCAGGAGGCCGAGATCGAGAAGATCAAGATGGCGGCGCTGGGCCGAGG
AGCACCTGGTGCCCAGTGGGCCATGGCCGGGTACTTCCATCCGAGCCTGA
TGCACCTGGGATAAAAGCTTTCTAGACCAT

BS04681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-RA 1548 CG1897-PA 1..1548 17..1564 7740 100 Plus
Hmx-RE 1779 CG43748-PE 1508..1553 1383..1428 200 95.7 Plus
Hmx-RD 2157 CG43748-PD 1508..1553 1383..1428 200 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-RA 2552 CG1897-RA 251..1798 17..1564 7740 100 Plus
Hmx-RE 3384 CG43748-RE 1942..1987 1383..1428 200 95.7 Plus
Hmx-RD 2691 CG43748-RD 1942..1987 1383..1428 200 95.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29556636..29557845 17..1226 6050 100 Plus
3R 32079331 3R 29564151..29564490 1225..1564 1700 100 Plus
3R 32079331 3R 17567655..17567700 1383..1428 200 95.7 Plus
Blast to na_te.dros performed on 2014-11-27 15:07:00 has no hits.

BS04681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:37 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 1..1548 17..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:45 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 243..1797 10..1564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:21 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 256..1796 22..1562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:37 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 243..1797 10..1564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:18 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
Dr-RA 256..1796 22..1562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:18 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29556641..29557845 22..1226 100 -> Plus
3R 29564153..29564488 1227..1562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:21 Download gff for BS04681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25382363..25383567 22..1226 100 -> Plus
arm_3R 25389875..25390210 1227..1562 100   Plus

BS04681.pep Sequence

Translation from 16 to 1563

> BS04681.pep
MLKLSPASMTVTGLRQTMTSPTVPPSSNTPAGNLIITSSSSNSGSNSGSN
MSSGNMTSSNLTNLSPSHPAGLNALASPTSPSALLLAHQQHLLQQHQQHQ
QQQQQQQQAAALQLAAVHPPAHHLHKTTSRLSNFSVASLLADTRPRTPPN
QAADGPQNLTSSAATSPISQASSTPPPPPASAAAQVPANTFHPAAVAHHA
HLLQAAHAAAAAHAQHQAMAAQLRQQQQQADARANSPPASTSSTPSSTPL
GSALGSQGNVASTPAKNERHSPLGSHTDSELEYDEEMLQDHEADHDEEED
SIVDIEDMNADDSPRSTPDGLDGSGKSLESPHGPPPGSHMQSTILSPAAL
ASGHVPIRPTPFSALAAAAVAWTGMGGGVPWPGTRQMPPFGPPGMFPGAG
FGGDANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE
RAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAPGAQ
WAMAGYFHPSLMHLG*

BS04681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dr-PA 515 CG1897-PA 1..515 1..515 2673 100 Plus
CG32532-PD 688 CG32532-PD 127..594 47..506 214 24.2 Plus
Dbx-PC 741 CG42234-PC 144..497 124..484 207 26 Plus
Dll-PB 322 CG3629-PB 1..215 308..515 201 31.9 Plus
Dll-PA 327 CG3629-PA 1..215 308..515 201 31.9 Plus