Clone Sequence Records
BS04683.complete Sequence
2240 bp assembled on 2009-12-07
GenBank Submission: KX798807
> BS04683.complete
GAAGTTATCAGTCGACATGAGCGGAGAGGAATCTGCCGGCATGGACTTTT
CGCAAAAGACCCTGCAGGATTACGAGGTTTTGGCCGTGATGGGGAATGGA
TCCTTCGGCACCTGCTACAAGGTGCGCGACAAAAGCACCGGTGAATTGTT
CGCCTGGAAGGGAATGAACTACGATGAACTGGACGAGGCCAAGTGCGACG
CTTTGGTTTCGGAAATCAGTGTTCTGCGGCAGCTCCAGCATCCTAACATT
GTGCAATACTACCATCATCTGGTGAACCGAGAGGCCAAGTCGGTGTACAT
TGTTATGGAGTGCTGTGCCGGCGGCGATCTCGCCCAGATTGTCCAGCGAG
CGAGATCCCAGAGGCAGCGGTTTGAGGAGCCCTACATCTGGCGGGTGCTC
TTCCAACTTTGCCGGGCGCTTCAGGTGTGCCACAACAAAATCCCCAACGG
AACCATCTTGCATCGCGATATCAAGCCAGCAAATATTTTCCTGGATGCGG
CCGGGAATGCCAAACTGGGAGATTTCGGTCTGGCCAGAATGCTGCGACGA
GATCAGAGCTTTGCCGCCTCCTTTGTGGGCACTCCGCACTACATGAGTCC
GGAGTTGGTGAAGGGCAGGAAATACGATCGGAAGAGCGATGTCTGGGCCG
TTGGTTGTTTGGTATACGAGATGTGTGCCCTAAGACCGCCGTTTCGCGGC
AGAGCCTTTGACCAGTTGTCCGAGAAGATCGCCCAGGGTGAGTTCAGTCG
GATTCCGGCAATCTATAGTACTGATCTGCAGGAGATCATCGCCTTCATGC
TGGCAGTGGATCATGAACAGCGTCCTGGCATCGAGGTTATCATTCGGCAT
CCTCTGGTGGTGCGTAATATTAGCGAGTTGGATGGCAAGTTCCCAATTCT
AGTTGATTCTGGAGAGGATTTCTACACACTGCCTTCGGGTGCCAGGCTTT
TCGAGGACGAAGAGGAAGATGGAGTTCATCCAGAGCTATCGAGCACCATG
TTTACGGAACAGTACAGCTTCAATGAAGGCTATGGGCAAAGGAGACTCAG
CGTTACTGGTGTGTTTACTCCAGATTTGCGAAGTGAACTCTTCTACTCCG
CCAAGCGCAAAATCTTTCCTGCCAAGAAACTACAGCTGTCGGATCCCTCT
CTTTATGAAAGTATAAGGAGAGAGGAGCGAGCGGAGGAGAGGCAGGTGGA
ACTGGCGGAAGAGCGGCGCCGTAAAAAGGATCAGGAGCAGCAGAAAAGGG
ATCAGGAGCTTCTAAAGGAGGCCCCTAGCAGTCCTCGTGCTCTTACCCAA
AACATATTCGATGAAGTACTAAAGACCCGTCTCCACGCCATTCGTGCCCA
AGAATCCCTGTTGCAGCAGAAGCTCGAAGAGCTGCAGACCCGGGAGCAGG
AGTTACAGCTGGCCGAACAGCGCGTGCAAACGCTGGAGCGGCAGATGCAG
GAAAAACTTCTTCAGCAGGAGAAACACACTTGTAGTTGCAGACAGCCGAT
AGCTCCGCCCATTCCTCCTAGGAAGCCAGCGAAATCGCACCATGATGACA
CCTACTGCACTATCGAACTCAACGAGACGTCGCCCACGGTGGCTAAACTC
AATTTAGCCACACTTCCGGCACCAAAATCGCTAAATACTCTGCGTAAGGT
TACCTTCAAGTCGCCCCAAAAGTTTGTTACCTATGGTATCGAGAATATGC
CCCCACCGGCGGTTAAACCGGCAGTGAATCCTCCGCCCACTGGCGTTCCC
ATGCAAATGAGCGTATCCAGCAATGATTCCGGTGACAGCCAGGCCTCCTC
CACCCGCAGGAAATCTATACTCTCGCTTTTCGGGTTGAGTCGCGGATCCA
AGGCGACATCCAAATCCTTGCCATCGGTCAACCAGGTAGCCCAAGCAGCT
GCAACTCGCGTGCAGCGACCTCCTTTGGCCGTCAAGCCACCGATCACGCA
GGAACAGCCGGCAGAAGTTCCACCAGTGGCCAATCTCTGGACAAAGGAGC
AGAAGAAACAAGCCTTCGAGCTGCTGGCGGCCATGAATGCAGCCGAGAGG
GAGGCAAGCGGAGGTGGAGTCGTTGGTTCTGGACCCGGAGGAGCACGTCG
CCAGCATCTGCGGCAATCGGTGAGGGAACGGAATTCCACGCTGCAGCGGA
ACCGCATGCGGAGGTCTTTGGTGGTGGCCACTGGCCATCAGAAGCTAACA
ACGCGCGACCAGATGGTGATCTGAAAGCTTTCTAGACCAT
BS04683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2208 | CG17256-PA | 1..2208 | 17..2224 | 11040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 148..2355 | 17..2224 | 11040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7889292..7891499 | 2224..17 | 11040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:59 has no hits.
BS04683.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:35 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 74..2280 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:54 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 148..2354 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:12 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 74..2280 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:58 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 148..2354 | 17..2223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:58 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7889293..7891499 | 17..2223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:54 Download gff for
BS04683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7783326..7785532 | 17..2223 | 100 | | Minus |
BS04683.3prime Sequence
910 bp (775 high quality bases) assembled on 2005-12-02
> BS04683.3prime
ATGGTCTAGAAAGCTTTCAGATCACCATCTGGTCGCGCGTTGTTAGCTTC
TGATGGCCAGTGGCCACCACCAAAGACCTCCGCATGCGGTTCCGCTGCAG
CGTGGAATTCCGTTCCCTCACCGATTGCCGCAGATGCTGGCGACGTGCTC
CTCCGGGTCCAGAACCAACGACTCCACCTCCGCTTGCCTCCCTCTCGGCT
GCATTCATGGCCGCCAGCAGCTCGAAGGCTTGTTTCTTCTGCTCCTTTGT
CCAGAGATTGGCCACTGGTGGAACTTCTGCCGGCTGTTCCTGCGTGATCG
GTGGCTTGACGGCCAAAGGAGGTCGCTGCACGCGAGTTGCAGCTGCTTGG
GCTACCTGGTTGACCGATGGCAAGGATTTGGATGTCGCCTTGGATCCGCG
ACTCAACCCGAAAAGCGAGAGTATAGATTTCCTGCGGGTGGAGGAGGCCT
GGCTGTCACCGGAATCATTGCTGGATACGCTCATTTGCATGGGAACGCCA
GTGGGCGGAGGATTCACTGCCGGTTTAACCGCCGGTGGGGGCATATTCTC
GATACCATAGGTAACAAACTTTTGGGGCGACTTGAAGGTAACCTTACGCA
GAGTATTTAGCGATTTTGGTGCCGGAAGTGTGGCTAAATTGAGTTTAGCC
ACCGTGGGCGACGTCTCGTTGAGTTCGATAGTGCAGTAGGTGTCATCATG
GTGCGATTTCGCTGGCTTCCTAGGAGGAATGGGCGGAGCTATCGGCTGTC
TGCAACTACAAGTGTGTTTCTCCTGCTGAAGAAGTTTTTCCTGCATCTGC
CGCTCCAGCGTTTGCACGCGCTGTTCGGCCAGCTGTAACTCCTGCTCCCG
GGTCTGCAGCTCTTCGAGCTTCTGCTGCAACAGGGGATTCTTGGGCACGA
ATGGCGTGGA
BS04683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17256-PA | 2208 | Nek2-RA | 1340..2208 | 885..17 | 4345 | 100 | Minus |
| CG17256-PA | 2208 | Nek2-RA | 1316..1342 | 910..884 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 1463..2355 | 910..17 | 4445 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7889292..7890184 | 17..910 | 4420 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 19:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1046..1175 | 894..765 | 155 | 60.9 | Minus |
BS04683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:54 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-PA | 1317..2208 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:22 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17256-PA | 1317..2208 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:49 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 1464..2355 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:42 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 1464..2355 | 17..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:42 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7889292..7890183 | 17..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:49 Download gff for
BS04683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7783325..7784216 | 17..909 | 99 | | Plus |
BS04683.5prime Sequence
912 bp (823 high quality bases) assembled on 2005-12-02
> BS04683.5prime
GAAGTTATCAGTCGACATGAGCGGAGAGGAATCTGCCGGCATGGACTTTT
CGCAAAAGACCCTGCAGGATTACGAGGTTTTGGCCGTGATGGGGAATGGA
TCCTTCGGCACCTGCTACAAGGTGCGCGACAAAAGCACCGGTGAATTGTT
CGCCTGGAAGGGAATGAACTACGATGAACTGGACGAGGCCAAGTGCGACG
CTTTGGTTTCGGAAATCAGTGTTCTGCGGCAGCTCCAGCATCCTAACATT
GTGCAATACTACCATCATCTGGTGAACCGAGAGGCCAAGTCGGTGTACAT
TGTTATGGAGTGCTGTGCCGGCGGCGATCTCGCCCAGATTGTCCAGCGAG
CGAGATCCCAGAGGCAGCGGTTTGAGGAGCCCTACATCTGGCGGGTGCTC
TTCCAACTTTGCCGGGCGCTTCAGGTGTGCCACAACAAAATCCCCAACGG
AACCATCTTGCATCGCGATATCAAGCCAGCAAATATTTTCCTGGATGCGG
CCGGGAATGCCAAACTGGGAGATTTCGGTCTGGCCAGAATGCTGCGACGA
GATCAGAGCTTTGCCGCCTCCTTTGTGGGCACTCCGCACTACATGAGTCC
GGAGTTGGTGAAGGGCAGGAAATACGATCGGAAGAGCGATGTCTGGGCCG
TTGGTTGTTTGGTATACGAGATGTGTGCCCTAAGACCGCCGTTTCGCGGC
AGAGCCTTTGACCAGTTGTCCGAGAAGATCGCCCAGGGTGAGTTCAGTCG
GATTCCGGCAATCTATAGTACTGATCTGCAGGAGATCATCGCCTTCATGC
TGGCAGTGGATCATGAACAGCGTCCTGGCATCGAGGTTATCATTCGGCAT
CCTCTGGTGGTGCGTAATATTAGCGAGTTGGATGGCAAGTTCCCAATTCT
AGTTGATTCTGG
BS04683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17256-PA | 2208 | Nek2-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-RA | 2581 | CG17256-RA | 148..1043 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7890604..7891499 | 912..17 | 4480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:16 has no hits.
BS04683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:55 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:24 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17256-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:35 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 138..1043 | 5..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:12 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nek2-RA | 138..1043 | 5..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:12 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7890604..7891509 | 5..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:35 Download gff for
BS04683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7784637..7785542 | 5..912 | 99 | | Minus |
BS04683.pep Sequence
Translation from 16 to 2223
> BS04683.pep
MSGEESAGMDFSQKTLQDYEVLAVMGNGSFGTCYKVRDKSTGELFAWKGM
NYDELDEAKCDALVSEISVLRQLQHPNIVQYYHHLVNREAKSVYIVMECC
AGGDLAQIVQRARSQRQRFEEPYIWRVLFQLCRALQVCHNKIPNGTILHR
DIKPANIFLDAAGNAKLGDFGLARMLRRDQSFAASFVGTPHYMSPELVKG
RKYDRKSDVWAVGCLVYEMCALRPPFRGRAFDQLSEKIAQGEFSRIPAIY
STDLQEIIAFMLAVDHEQRPGIEVIIRHPLVVRNISELDGKFPILVDSGE
DFYTLPSGARLFEDEEEDGVHPELSSTMFTEQYSFNEGYGQRRLSVTGVF
TPDLRSELFYSAKRKIFPAKKLQLSDPSLYESIRREERAEERQVELAEER
RRKKDQEQQKRDQELLKEAPSSPRALTQNIFDEVLKTRLHAIRAQESLLQ
QKLEELQTREQELQLAEQRVQTLERQMQEKLLQQEKHTCSCRQPIAPPIP
PRKPAKSHHDDTYCTIELNETSPTVAKLNLATLPAPKSLNTLRKVTFKSP
QKFVTYGIENMPPPAVKPAVNPPPTGVPMQMSVSSNDSGDSQASSTRRKS
ILSLFGLSRGSKATSKSLPSVNQVAQAAATRVQRPPLAVKPPITQEQPAE
VPPVANLWTKEQKKQAFELLAAMNAAEREASGGGVVGSGPGGARRQHLRQ
SVRERNSTLQRNRMRRSLVVATGHQKLTTRDQMVI*
BS04683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nek2-PA | 735 | CG17256-PA | 1..735 | 1..735 | 3776 | 100 | Plus |
| niki-PA | 841 | CG10951-PA | 87..370 | 1..290 | 463 | 34.6 | Plus |
| polo-PB | 576 | CG12306-PB | 17..268 | 9..272 | 334 | 27.9 | Plus |
| polo-PA | 576 | CG12306-PA | 17..268 | 9..272 | 334 | 27.9 | Plus |
| Pka-C1-PD | 353 | CG4379-PD | 43..285 | 16..271 | 320 | 30.7 | Plus |
