Clone BS04685 Report

Search the DGRC for BS04685

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptttm50-RA
Protein status:BS04685.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04685.3prime Sequence

944 bp (878 high quality bases) assembled on 2005-12-02

> BS04685.3prime
ATGGTCTAGAAAGCTTCTAGCGGCCGAGAATGTTGCGCGACCACTGTTTG
ACCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTG
TTCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGA
ACTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGC
GCAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTC
GTTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGG
TGGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTA
AGGTTGTCCAGGTTCTTCACATGATGGCCGTCCACAAAGTGCGTGGCATC
CCTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGA
TGGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAG
TCCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAA
GCGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCAGCACGTCCTTCA
TCTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGA
TCGGGCAGCAGTTTGGCGCGCGACGGCTCCTGGATCATGCGCTGATAGTA
GTGAATGCTCTTCCACATCCGCTGCAGATACTGCTGTACCAGCGGCTTGT
GTGTGAACTCGTCCTCGATGGGCTGCCCGTTGGGGTCCACCTCGGGCTTG
CCGAACTCGTAGACGGCCCAGAATCCAGCAGCCACGGCGCTGCCTCCGAA
TATTGCAAAGCCCAGCTTCATGCGCTTCCAGGCACGCTCGTTCTCCTTTT
CCTCCTCCTCCTCGCGCTTCTTGCGCTCCTGCTCGGCGTTGCTG

BS04685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 360..1287 944..17 4640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 502..1429 944..17 4640 100 Minus
ttm50-RA 1728 CG2713-RA 502..1429 944..17 4640 100 Minus
ttm2-RA 1513 CG12313-RA 769..1134 661..296 510 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731478 331..861 2655 100 Plus
X 23542271 X 2730516..2730706 17..207 955 100 Plus
X 23542271 X 2730766..2730891 208..333 630 100 Plus
3L 28110227 3L 275923..276288 661..296 495 75.7 Minus
X 23542271 X 2731534..2731617 861..944 420 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:19:02 has no hits.

BS04685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:59 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 360..1287 17..944 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:28 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 360..1287 17..944 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:04 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 502..1432 14..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:34 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 502..1432 14..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:34 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2730513..2730706 14..207 99 <- Plus
X 2730766..2730889 208..331 100 <- Plus
X 2730949..2731477 332..860 100 <- Plus
X 2731534..2731617 861..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:04 Download gff for BS04685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624546..2624739 14..207 99 <- Plus
arm_X 2624799..2624922 208..331 100 <- Plus
arm_X 2624982..2625510 332..860 100 <- Plus
arm_X 2625567..2625650 861..944 100   Plus

BS04685.5prime Sequence

809 bp (780 high quality bases) assembled on 2005-11-29

> BS04685.5prime
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGT

BS04685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2713-PA 1287 CG2713-RA 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 142..935 16..809 3970 100 Plus
ttm50-RA 1728 CG2713-RA 142..935 16..809 3970 100 Plus
ttm2-RA 1513 CG12313-RA 769..903 659..793 270 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2731128..2731478 809..459 1755 100 Minus
X 23542271 X 2731790..2732049 275..16 1300 100 Minus
X 23542271 X 2731534..2731717 459..276 920 100 Minus
3L 28110227 3L 275923..276057 659..793 270 80 Plus
Blast to na_te.dros performed on 2015-02-11 11:49:30 has no hits.

BS04685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:59 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:29 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2713-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:46 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 142..935 16..809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:52 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 142..935 16..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:52 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2731790..2732049 16..275 100   Minus
X 2731128..2731477 460..809 100 <- Minus
X 2731534..2731717 276..459 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:46 Download gff for BS04685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2625161..2625510 460..809 100 <- Minus
arm_X 2625567..2625750 276..459 100 <- Minus
arm_X 2625823..2626082 16..275 100   Minus

BS04685.complete Sequence

1319 bp (1319 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635007

> BS04685.complete
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCATG
TGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTGTG
GACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGCTT
GGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTATCG
CTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGGTG
CTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAGAA
CCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCAGT
CCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCCGC
TAGAAGCTTTCTAGACCAT

BS04685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1287 CG2713-PB 1..1287 17..1303 6435 100 Plus
ttm50-RA 1287 CG2713-PA 1..1287 17..1303 6435 100 Plus
ttm2-RA 1230 CG12313-PA 586..951 659..1024 495 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-RB 1868 CG2713-RB 142..1429 16..1303 6440 100 Plus
ttm50-RA 1728 CG2713-RA 142..1429 16..1303 6440 100 Plus
ttm2-RA 1513 CG12313-RA 769..1134 659..1024 495 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2730948..2731478 989..459 2655 100 Minus
X 23542271 X 2731790..2732049 275..16 1300 100 Minus
X 23542271 X 2730516..2730706 1303..1113 955 100 Minus
X 23542271 X 2731534..2731717 459..276 920 100 Minus
X 23542271 X 2730766..2730891 1112..987 630 100 Minus
3L 28110227 3L 275923..276288 659..1024 495 75.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:31 has no hits.

BS04685.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:17 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 1..1287 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:22 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 137..1427 16..1306 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:44 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 143..1429 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:17 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 137..1427 16..1306 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:34 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
ttm50-RA 143..1429 17..1303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:34 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
X 2731790..2732048 17..275 100   Minus
X 2730516..2730706 1113..1303 100 <- Minus
X 2730766..2730889 989..1112 100 <- Minus
X 2730949..2731477 460..988 100 <- Minus
X 2731534..2731717 276..459 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:44 Download gff for BS04685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2624549..2624739 1113..1303 100 <- Minus
arm_X 2624799..2624922 989..1112 100 <- Minus
arm_X 2624982..2625510 460..988 100 <- Minus
arm_X 2625567..2625750 276..459 100 <- Minus
arm_X 2625823..2626081 17..275 100   Minus

BS04685.pep Sequence

Translation from 16 to 1302

> BS04685.pep
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGR*

BS04685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
ttm50-PB 428 CG2713-PB 1..428 1..428 2305 100 Plus
ttm50-PA 428 CG2713-PA 1..428 1..428 2305 100 Plus
ttm2-PA 409 CG12313-PA 87..407 107..426 1119 63.4 Plus
ttm3-PA 343 CG6691-PA 61..335 149..428 911 59.3 Plus
CG5830-PA 329 CG5830-PA 130..276 254..406 193 32 Plus