Clone Sequence Records
BS04685.3prime Sequence
944 bp (878 high quality bases) assembled on 2005-12-02
> BS04685.3prime
ATGGTCTAGAAAGCTTCTAGCGGCCGAGAATGTTGCGCGACCACTGTTTG
ACCATTGGCTTGGTCTTGGACTGCTCGATGCGTTCCGCCTCCAGCATTTG
TTCGGCCAGCTTGCGCTGGTTCTCCCGGAACTGGTTGATGGGATCGTCGA
ACTGGCGATAGTAGTGGAGCACCTCGCGCACGTCGTCCACGTTGTTCTGC
GCAATTATCTTTAGGAAAGCGATAAGGTCCAGCAGTTGGCCATCATCGTC
GTTGCCATGCCAGCGGGCCAAGCCGAATGTGTTGTCCGGATGCATCTTGG
TGGCATTCGCATCCCAGTCCACAACAATCACCTTCTTGAGGTCGCGATTA
AGGTTGTCCAGGTTCTTCACATGATGGCCGTCCACAAAGTGCGTGGCATC
CCTGACCAGGCGGTACATAATGTAGCCGTTGGGATCGAGGGCATCCAGGA
TGGGGAACACGGTCATGCCCTGTTCGGCGGTGAAGACGACAATTTCAAAG
TCCTTGGCGCACTCGGCCAGAAAGTGGTCGACGCCGGGACGCTTCTTGAA
GCGCCAGCCAGTTTGGTAAGTCCAGTCCGGATGCACCAGCACGTCCTTCA
TCTCCAGCACAAGCGTGTAGCGCGGCTGCACGTACGGCGGCTTGAGCGGA
TCGGGCAGCAGTTTGGCGCGCGACGGCTCCTGGATCATGCGCTGATAGTA
GTGAATGCTCTTCCACATCCGCTGCAGATACTGCTGTACCAGCGGCTTGT
GTGTGAACTCGTCCTCGATGGGCTGCCCGTTGGGGTCCACCTCGGGCTTG
CCGAACTCGTAGACGGCCCAGAATCCAGCAGCCACGGCGCTGCCTCCGAA
TATTGCAAAGCCCAGCTTCATGCGCTTCCAGGCACGCTCGTTCTCCTTTT
CCTCCTCCTCCTCGCGCTTCTTGCGCTCCTGCTCGGCGTTGCTG
BS04685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 360..1287 | 944..17 | 4640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 502..1429 | 944..17 | 4640 | 100 | Minus |
ttm50-RA | 1728 | CG2713-RA | 502..1429 | 944..17 | 4640 | 100 | Minus |
ttm2-RA | 1513 | CG12313-RA | 769..1134 | 661..296 | 510 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2730948..2731478 | 331..861 | 2655 | 100 | Plus |
X | 23542271 | X | 2730516..2730706 | 17..207 | 955 | 100 | Plus |
X | 23542271 | X | 2730766..2730891 | 208..333 | 630 | 100 | Plus |
3L | 28110227 | 3L | 275923..276288 | 661..296 | 495 | 75.7 | Minus |
X | 23542271 | X | 2731534..2731617 | 861..944 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:19:02 has no hits.
BS04685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:59 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 360..1287 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:28 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 360..1287 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:06:04 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 502..1432 | 14..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:34 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 502..1432 | 14..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:34 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2730513..2730706 | 14..207 | 99 | <- | Plus |
X | 2730766..2730889 | 208..331 | 100 | <- | Plus |
X | 2730949..2731477 | 332..860 | 100 | <- | Plus |
X | 2731534..2731617 | 861..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:06:04 Download gff for
BS04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2624546..2624739 | 14..207 | 99 | <- | Plus |
arm_X | 2624799..2624922 | 208..331 | 100 | <- | Plus |
arm_X | 2624982..2625510 | 332..860 | 100 | <- | Plus |
arm_X | 2625567..2625650 | 861..944 | 100 | | Plus |
BS04685.5prime Sequence
809 bp (780 high quality bases) assembled on 2005-11-29
> BS04685.5prime
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGT
BS04685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2713-PA | 1287 | CG2713-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 142..935 | 16..809 | 3970 | 100 | Plus |
ttm50-RA | 1728 | CG2713-RA | 142..935 | 16..809 | 3970 | 100 | Plus |
ttm2-RA | 1513 | CG12313-RA | 769..903 | 659..793 | 270 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2731128..2731478 | 809..459 | 1755 | 100 | Minus |
X | 23542271 | X | 2731790..2732049 | 275..16 | 1300 | 100 | Minus |
X | 23542271 | X | 2731534..2731717 | 459..276 | 920 | 100 | Minus |
3L | 28110227 | 3L | 275923..276057 | 659..793 | 270 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:49:30 has no hits.
BS04685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:54:59 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:29 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2713-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:46 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 142..935 | 16..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:52 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 142..935 | 16..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:52 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2731790..2732049 | 16..275 | 100 | | Minus |
X | 2731128..2731477 | 460..809 | 100 | <- | Minus |
X | 2731534..2731717 | 276..459 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:46 Download gff for
BS04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2625161..2625510 | 460..809 | 100 | <- | Minus |
arm_X | 2625567..2625750 | 276..459 | 100 | <- | Minus |
arm_X | 2625823..2626082 | 16..275 | 100 | | Minus |
BS04685.complete Sequence
1319 bp (1319 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635007
> BS04685.complete
GAAGTTATCAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCC
AGTTGCTGCGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAG
CACCGCGCATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCA
CCAGCACCACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTT
GCACAGCACTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACA
GCGCGTGGCTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCC
CAATGATGCGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCT
TTCCTCAGACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAG
AAGCGCGAGGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCAT
GAAGCTGGGCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCT
GGGCCGTCTACGAGTTCGGCAAGCCCGAGGTGGACCCCAACGGGCAGCCC
ATCGAGGACGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCG
GATGTGGAAGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGC
GCGCCAAACTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGC
TACACGCTTGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGAC
TTACCAAACTGGCTGGCGCTTCAAGAAGCGTCCCGGCGTCGACCACTTTC
TGGCCGAGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAG
GGCATGACCGTGTTCCCCATCCTGGATGCCCTCGATCCCAACGGCTACAT
TATGTACCGCCTGGTCAGGGATGCCACGCACTTTGTGGACGGCCATCATG
TGAAGAACCTGGACAACCTTAATCGCGACCTCAAGAAGGTGATTGTTGTG
GACTGGGATGCGAATGCCACCAAGATGCATCCGGACAACACATTCGGCTT
GGCCCGCTGGCATGGCAACGACGATGATGGCCAACTGCTGGACCTTATCG
CTTTCCTAAAGATAATTGCGCAGAACAACGTGGACGACGTGCGCGAGGTG
CTCCACTACTATCGCCAGTTCGACGATCCCATCAACCAGTTCCGGGAGAA
CCAGCGCAAGCTGGCCGAACAAATGCTGGAGGCGGAACGCATCGAGCAGT
CCAAGACCAAGCCAATGGTCAAACAGTGGTCGCGCAACATTCTCGGCCGC
TAGAAGCTTTCTAGACCAT
BS04685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1287 | CG2713-PB | 1..1287 | 17..1303 | 6435 | 100 | Plus |
ttm50-RA | 1287 | CG2713-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
ttm2-RA | 1230 | CG12313-PA | 586..951 | 659..1024 | 495 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-RB | 1868 | CG2713-RB | 142..1429 | 16..1303 | 6440 | 100 | Plus |
ttm50-RA | 1728 | CG2713-RA | 142..1429 | 16..1303 | 6440 | 100 | Plus |
ttm2-RA | 1513 | CG12313-RA | 769..1134 | 659..1024 | 495 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2730948..2731478 | 989..459 | 2655 | 100 | Minus |
X | 23542271 | X | 2731790..2732049 | 275..16 | 1300 | 100 | Minus |
X | 23542271 | X | 2730516..2730706 | 1303..1113 | 955 | 100 | Minus |
X | 23542271 | X | 2731534..2731717 | 459..276 | 920 | 100 | Minus |
X | 23542271 | X | 2730766..2730891 | 1112..987 | 630 | 100 | Minus |
3L | 28110227 | 3L | 275923..276288 | 659..1024 | 495 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:31 has no hits.
BS04685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:17 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:22 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 137..1427 | 16..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:44 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 143..1429 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:17 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 137..1427 | 16..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:34 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttm50-RA | 143..1429 | 17..1303 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:34 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2731790..2732048 | 17..275 | 100 | | Minus |
X | 2730516..2730706 | 1113..1303 | 100 | <- | Minus |
X | 2730766..2730889 | 989..1112 | 100 | <- | Minus |
X | 2730949..2731477 | 460..988 | 100 | <- | Minus |
X | 2731534..2731717 | 276..459 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:44 Download gff for
BS04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2624549..2624739 | 1113..1303 | 100 | <- | Minus |
arm_X | 2624799..2624922 | 989..1112 | 100 | <- | Minus |
arm_X | 2624982..2625510 | 460..988 | 100 | <- | Minus |
arm_X | 2625567..2625750 | 276..459 | 100 | <- | Minus |
arm_X | 2625823..2626081 | 17..275 | 100 | | Minus |
BS04685.pep Sequence
Translation from 16 to 1302
> BS04685.pep
MSMSMAPATVLQLLRGLSTPRLLTHIHQHRALGNHYHHYHQHYQHQHHLL
HHQQQYLRLFTCTALPAAAPALFSILHTARGYSSTTKQEAGATGPNDAPE
VAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENERAWKRMKLGFA
IFGGSAVAAGFWAVYEFGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSI
HYYQRMIQEPSRAKLLPDPLKPPYVQPRYTLVLEMKDVLVHPDWTYQTGW
RFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIMYRLV
RDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHG
NDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLA
EQMLEAERIEQSKTKPMVKQWSRNILGR*
BS04685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttm50-PB | 428 | CG2713-PB | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm50-PA | 428 | CG2713-PA | 1..428 | 1..428 | 2305 | 100 | Plus |
ttm2-PA | 409 | CG12313-PA | 87..407 | 107..426 | 1119 | 63.4 | Plus |
ttm3-PA | 343 | CG6691-PA | 61..335 | 149..428 | 911 | 59.3 | Plus |
CG5830-PA | 329 | CG5830-PA | 130..276 | 254..406 | 193 | 32 | Plus |