Clone Sequence Records
BS04686.3prime Sequence
925 bp (773 high quality bases) assembled on 2005-12-02
> BS04686.3prime
ATGGTCTAGAAAGCTTCTAGAGCCGAACTTCGGGCTTGGCCCAACCGCCA
AAGGCTCGCTCCAATTCCTCGGCAACGGCCAAACAAAGTCGATCCTGATT
GAAGTTGGCGATGATTTGGACACCCAGTGGCAGACCCTCGCTGCCCAGCT
TGCCCAGCGGCACAGCGGTGGCCGGGAAGCCCAGCACATTGACAATACCA
GTGTAGGCAAAGTTAATGGGTCGCGTAATGGGCTCATTGTGGTATGGAGC
CACCGTGGGATGCGTGGGATAGATCAGCACACCATTATCGCCCAGCAGGC
TTTGCAACTCCTCCCTCAGCTCATTTCGTTTGCGCACCAGATGATCGTAC
TTGGGAGATCCGTGCTTGCACTGTGCACTATCCATGATAGCTGTCGACAG
GCCAATGAATGTGTGCTTGGAAGCGCCGAAGAACCACTTGAAGAGCTCCA
GGTACGTGTTGATGTCATGATTCAGGTTGCCTAGCTGGTAGGCGAATCCA
TGGCCACTGTCGTCGCGCATGTTGGCAAACCAAATGGCCGCCGACTGCCG
GAAGTGGGGCAGCTGGATGCGCTCCACTTTCTGATTGCCGAACTTCTCTC
TCAAGTGCTGTGCCACGCGGTTCATGGCCTCTCTTAAGTCTGGATCAACG
GCGGAAACCAAGCGGCCGCCGCCATCGGACTCTTGGTAGAAGAACTTCAT
TTTGGTTAGGTCCACATCCTCGTCCAGATTAAGCAGGGCCGCCTTCTCGC
CAGCCATAATCTTTAGCATGGGTCGCAGGTCCTCGGCAAATCGTGACATA
GGTCCCAGGCCGAGGAAGGAGTTCTGCTCGGCACTGAAGGGCGCTGGGGA
CTGACCGACATTGGAGACGACCAACTTGCTGGGGCTGTGGCCAAGATGCC
ATTGAAAAAGCTGGCATGCGAATGG
BS04686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PD | 1590 | CG8839-RD | 713..1590 | 894..17 | 4315 | 99.6 | Minus |
| CG8839-PC | 1590 | CG8839-RC | 713..1590 | 894..17 | 4315 | 99.6 | Minus |
| CG8839-PA | 1590 | CG8839-RA | 713..1590 | 894..17 | 4315 | 99.6 | Minus |
| CG8839-PE | 1590 | CG8839-RE | 713..1590 | 894..17 | 4315 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 878..1792 | 925..13 | 4465 | 99.3 | Minus |
| CG8839-RA | 2082 | CG8839-RA | 889..1803 | 925..13 | 4465 | 99.3 | Minus |
| CG8839-RC | 2143 | CG8839-RC | 950..1864 | 925..13 | 4465 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12339889..12340506 | 13..630 | 3075 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12340565..12340864 | 628..925 | 1355 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:42:46 has no hits.
BS04686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:00 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PC | 680..1590 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:31 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PE | 680..1590 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:16:37 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 950..1874 | 4..925 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:45 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 950..1874 | 4..925 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:45 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12339879..12340504 | 4..628 | 99 | <- | Plus |
| 2R | 12340566..12340864 | 629..925 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:16:37 Download gff for
BS04686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8227384..8228009 | 4..628 | 99 | <- | Plus |
| arm_2R | 8228071..8228369 | 629..925 | 98 | | Plus |
BS04686.5prime Sequence
923 bp (816 high quality bases) assembled on 2005-11-29
> BS04686.5prime
GAAGTTATCAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTG
GTGGTTACATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGG
CTGATCTATGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCAT
TCTCTTGGAGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGC
TGAGCAGCGTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTG
AATCCCATTCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAA
GGAGGCAGCCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGG
AGGAGTTGGAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAG
GATTGCATATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACG
TCGGGATGTGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCA
AGGCGGGAGCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATG
TGGTGGGAGAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGA
CACTAACCGCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGT
CGGCGGCTGCCTCCGCCTTTGGCTTGGGCTCCGACATTGGCGGCTCCATT
CGCATGCCAGCCTTTTTCAATGGCATCTTTGGCCACAAGCCCAGCAAGTT
GGTCGTCTCCAATGTCGGTCAGTTCCCAGCGCCCTTCAGTGCCGAGCAGA
ACTCCTTCCTCGGCCTGGGAACTATGTCACGATTTGCCGAGGACCTGCGA
CCCATGCTAAAGATTATGGCTGGCGAGAAGGCCGCCCTGCTTTATCTGGA
CGAGGATGTGGACCTAACCAAAA
BS04686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PD | 1590 | CG8839-RD | 1..907 | 17..923 | 4460 | 99.6 | Plus |
| CG8839-PC | 1590 | CG8839-RC | 1..907 | 17..923 | 4460 | 99.6 | Plus |
| CG8839-PA | 1590 | CG8839-RA | 1..907 | 17..923 | 4460 | 99.6 | Plus |
| CG8839-PE | 1590 | CG8839-RE | 1..907 | 17..923 | 4460 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..1105 | 17..923 | 4490 | 99.7 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..1116 | 17..923 | 4490 | 99.7 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..1177 | 17..923 | 4490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12340637..12341141 | 923..419 | 2480 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 420..198 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 204..17 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:47:06 has no hits.
BS04686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:01 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PE | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:32 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-PE | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:53:32 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1173 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:23:24 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1173 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:23:24 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12340641..12341140 | 420..919 | 99 | <- | Minus |
| 2R | 12341210..12341429 | 200..419 | 100 | <- | Minus |
| 2R | 12341488..12341676 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:53:32 Download gff for
BS04686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8228146..8228645 | 420..919 | 99 | <- | Minus |
| arm_2R | 8228715..8228934 | 200..419 | 100 | <- | Minus |
| arm_2R | 8228993..8229181 | 9..199 | 97 | | Minus |
BS04686.complete Sequence
1622 bp (1622 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635008
> BS04686.complete
GAAGTTATCAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTG
GTGGTTACATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGG
CTGATCTATGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCAT
TCTCTTGGAGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGC
TGAGCAGCGTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTG
AATCCCATTCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAA
GGAGGCAGCCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGG
AGGAGTTGGAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAG
GATTGCATATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACG
TCGGGATGTGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCA
AGGCGGGAGCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATG
TGGTGGGAGAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGA
CACTAACCGCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGT
CGGCGGCTGCCTCCGCCTTTGGCTTGGGCTCCGACATTGGCGGCTCCATT
CGCATGCCAGCCTTTTTCAATGGCATCTTTGGCCACAAGCCCAGCAAGTT
GGTCGTCTCCAATGTCGGTCAGTTCCCAGCGCCCTTCAGTGCCGAGCAGA
ACTCCTTCCTCGGCCTGGGACCTATGTCACGATTTGCCGAGGACCTGCGA
CCCATGCTAAAGATTATGGCTGGCGAGAAGGCGGCCCTGCTTAATCTGGA
CGAGGATGTGGACCTAACCAAAATGAAGTTCTTCTACCAAGAGTCCGATG
GCGGCGGCCGCTTGGTTTCCGCCGTTGATCCAGACTTAAGAGAGGCCATG
AACCGCGTGGCACAGCACTTGAGAGAGAAGTTCGGCAATCAGAAAGTGGA
GCGCATCCAGCTGCCCCACTTCCGGCAGTCGGCGGCCATTTGGTTTGCCA
ACATGCGCGACGACAGTGGCCATGGATTCGCCTACCAGCTAGGCAACCTG
AATCATGACATCAACACGTACCTGGAGCTCTTCAAGTGGTTCTTCGGCGC
TTCCAAGCACACATTCATTGGCCTGTCGACAGCTATCATGGATAGTGCAC
AGTGCAAGCACGGATCTCCCAAGTACGATCATCTGGTGCGCAAACGAAAT
GAGCTGAGGGAGGAGTTGCAAAGCCTGCTGGGCGATAATGGTGTGCTGAT
CTATCCCACGCATCCCACGGTGGCTCCATACCACAATGAGCCCATTACGC
GACCCATTAACTTTGCCTACACTGGTATTGTCAATGTGCTGGGCTTCCCG
GCCACCGCTGTGCCGCTGGGCAAGCTGGGCAGCGAGGGTCTGCCACTGGG
TGTCCAAATCATCGCCAACTTCAATCAGGATCGACTTTGTTTGGCCGTTG
CCGAGGAATTGGAGCGAGCCTTTGGCGGTTGGGCCAAGCCCGAAGTTCGG
CTCTAGAAGCTTTCTAGACCAT
BS04686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 1590 | CG8839-PE | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG8839-RA | 1590 | CG8839-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| CG8839-RC | 1590 | CG8839-PC | 1..1590 | 17..1606 | 7950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..1792 | 17..1610 | 7955 | 99.9 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..1803 | 17..1610 | 7955 | 99.9 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..1864 | 17..1610 | 7955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12339889..12340506 | 1610..993 | 3075 | 99.8 | Minus |
| 2R | 25286936 | 2R | 12340565..12341141 | 995..419 | 2885 | 100 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 420..198 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 204..17 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:50:12 has no hits.
BS04686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:26 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 1..1590 | 17..1606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:33 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 200..1809 | 9..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:03 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 271..1860 | 17..1606 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:27 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 200..1809 | 9..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:44 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 271..1860 | 17..1606 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:44 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12339893..12340504 | 995..1606 | 100 | <- | Minus |
| 2R | 12340566..12341140 | 420..994 | 100 | <- | Minus |
| 2R | 12341210..12341429 | 200..419 | 100 | <- | Minus |
| 2R | 12341488..12341670 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:03 Download gff for
BS04686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8227398..8228009 | 995..1606 | 100 | <- | Minus |
| arm_2R | 8228071..8228645 | 420..994 | 100 | <- | Minus |
| arm_2R | 8228715..8228934 | 200..419 | 100 | <- | Minus |
| arm_2R | 8228993..8229175 | 17..199 | 100 | | Minus |
BS04686.pep Sequence
Translation from 16 to 1605
> BS04686.pep
MAKSVPLTQAIGGYIFGILQACIRFVFRLIYGQKGESVPPITDAILLESA
TSLARKIRKQELSSVQVLESFIRRIKEVNPILNCVVDERYDQALKEAAEA
DALIKSGQYSTEELEKEKPFLGVPITTKDCISVKGMLHTAGLFERRDVRA
ARDADAMALMRKAGAIPIALTNVSEVCMWWESNNTVHGRTRNAYDTNRIV
GGSSGGEGCIQSAAASAFGLGSDIGGSIRMPAFFNGIFGHKPSKLVVSNV
GQFPAPFSAEQNSFLGLGPMSRFAEDLRPMLKIMAGEKAALLNLDEDVDL
TKMKFFYQESDGGGRLVSAVDPDLREAMNRVAQHLREKFGNQKVERIQLP
HFRQSAAIWFANMRDDSGHGFAYQLGNLNHDINTYLELFKWFFGASKHTF
IGLSTAIMDSAQCKHGSPKYDHLVRKRNELREELQSLLGDNGVLIYPTHP
TVAPYHNEPITRPINFAYTGIVNVLGFPATAVPLGKLGSEGLPLGVQIIA
NFNQDRLCLAVAEELERAFGGWAKPEVRL*
BS04686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-PE | 529 | CG8839-PE | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PA | 529 | CG8839-PA | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PC | 529 | CG8839-PC | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG8839-PD | 529 | CG8839-PD | 1..529 | 1..529 | 2735 | 100 | Plus |
| CG5112-PA | 523 | CG5112-PA | 23..518 | 23..525 | 873 | 40.2 | Plus |
