Clone Sequence Records
BS04688.3prime Sequence
926 bp (897 high quality bases) assembled on 2005-12-02
> BS04688.3prime
ATGGTCTAGAAAGCTTTCATGTGATCTCGGGAGCACTGTGCTTCAGCTCC
GGCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGGTA
GCCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGACGG
ATGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTGATC
CTCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCACTC
CACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCCGG
ATGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCAGG
ACAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTGAA
GCTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAGCT
TGAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTGCG
CCCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTGGG
CGAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCTCA
GATCCCGCGGCTTGTCGTCGTCCACGCTCAAGCTCTCCTCGCGGTCGTTG
GCGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTCGG
CACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGACG
GCGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATTCCC
GAGCTGTTCTGGCTATGCTGGATGCGATTCTTGGCCGCAGCAGCCCGATC
CCGCTGGCGGCGGTTCTTGAACAGTTGCCCACTTGCGTGGGATTCAGGCC
CGTGGGCTTGGCCAGCTCCCGCTTCT
BS04688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18455-PA | 1464 | Optix-RA | 609..1464 | 872..17 | 4280 | 100 | Minus |
| CG18455-PB | 780 | Optix-RB | 1..780 | 796..17 | 3900 | 100 | Minus |
| CG18455-PA | 1464 | Optix-RA | 554..608 | 926..872 | 225 | 96.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 2668 | CG18455-RC | 1229..2139 | 926..17 | 4500 | 99.7 | Minus |
| Optix-RA | 2358 | CG18455-RA | 919..1829 | 926..17 | 4500 | 99.7 | Minus |
| Optix-RB | 1470 | CG18455-RB | 133..941 | 825..17 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8041192..8042000 | 825..17 | 4045 | 100 | Minus |
| 2R | 25286936 | 2R | 8034438..8034540 | 926..825 | 435 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:19:56 has no hits.
BS04688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:05 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-PA | 554..1464 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:36 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18455-PA | 554..1464 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:47 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 919..1829 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:37 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 919..1829 | 17..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:37 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8034438..8034540 | 825..926 | 97 | -> | Minus |
| 2R | 8041193..8042000 | 17..824 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:47 Download gff for
BS04688.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3921943..3922045 | 825..926 | 97 | -> | Minus |
| arm_2R | 3928698..3929505 | 17..824 | 100 | | Minus |
BS04688.5prime Sequence
948 bp (835 high quality bases) assembled on 2005-12-02
> BS04688.5prime
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCNACGGCGCCAAC
GACCGCGAGGAGAGCTTGAGCGTGGACGACGACNAGCCGCGGGATCTGAG
CGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGGCTCGCC
BS04688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18455-PA | 1464 | Optix-RA | 1..932 | 17..948 | 4597 | 99.6 | Plus |
| CG18455-PB | 780 | Optix-RB | 1..248 | 701..948 | 1177 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 2668 | CG18455-RC | 676..1607 | 17..948 | 4623 | 99.7 | Plus |
| Optix-RA | 2358 | CG18455-RA | 366..1297 | 17..948 | 4623 | 99.7 | Plus |
| Optix-RB | 1470 | CG18455-RB | 133..409 | 672..948 | 1348 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8031958..8032245 | 17..304 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 8041192..8041468 | 672..948 | 1348 | 98.9 | Plus |
| 2R | 25286936 | 2R | 8034290..8034540 | 422..672 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 8033300..8033424 | 299..423 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 20790294..20790427 | 511..378 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:43:34 has no hits.
BS04688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:06 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:38 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18455-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:41:00 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1297 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:38 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1297 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:38 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8031958..8032244 | 17..303 | 100 | -> | Plus |
| 2R | 8033305..8033423 | 304..422 | 100 | -> | Plus |
| 2R | 8034291..8034540 | 423..672 | 100 | -> | Plus |
| 2R | 8041193..8041468 | 673..948 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:41:00 Download gff for
BS04688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3919463..3919749 | 17..303 | 100 | -> | Plus |
| arm_2R | 3920810..3920928 | 304..422 | 100 | -> | Plus |
| arm_2R | 3921796..3922045 | 423..672 | 100 | -> | Plus |
| arm_2R | 3928698..3928973 | 673..948 | 98 | | Plus |
BS04688.complete Sequence
1496 bp (1496 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635009
> BS04688.complete
GAAGTTATCAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGC
CCTCAGAGAGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCC
ATCCTGGCCGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGT
TTGCAAGACGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCC
TCTGGAGCCTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGC
GAGGCGGTGCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTT
CAGGGAACTTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCT
ACGGCAAACTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAG
AAGCTGCGCGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAA
GAAGTTCCCCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACT
GCTTCAAGGAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGAT
CCCTACCCGAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCT
GAATCCCACGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATC
GGGCTGCTGCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGA
ATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTC
GGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGA
GCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCAAC
GACCGCGAGGAGAGCTTGAGCGTGGACGACGACAAGCCGCGGGATCTGAG
CGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGCCTCGCCCA
CCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGGGCGGGCGCA
GGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACCCTTCAAGCT
GGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGCAGAGCTTCA
GCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCGATTGTCCTG
CGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGGCGCATCCGG
CGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACAGTGTGGAGT
GCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAGCTGAGGATC
AACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGCAGCATCCGT
CGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGACCGGCTACC
ATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACGTCGCCGGAG
CTGAAGCACAGTGCTCCCGAGATCACATGAAAGCTTTCTAGACCAT
BS04688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 1479 | CG18455-PC | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| Optix-RA | 1464 | CG18455-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| Optix-RB | 780 | CG18455-PB | 1..780 | 701..1480 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 2668 | CG18455-RC | 676..2139 | 17..1480 | 7320 | 100 | Plus |
| Optix-RA | 2358 | CG18455-RA | 366..1829 | 17..1480 | 7320 | 100 | Plus |
| Optix-RB | 1470 | CG18455-RB | 133..941 | 672..1480 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8041192..8042000 | 672..1480 | 4045 | 100 | Plus |
| 2R | 25286936 | 2R | 8031958..8032245 | 17..304 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 8034290..8034540 | 422..672 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 8033300..8033424 | 299..423 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 20790294..20790427 | 511..378 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:46:19 has no hits.
BS04688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:28 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:51 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 326..1788 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:02 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1828 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:28 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 326..1789 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:11 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1828 | 17..1479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:11 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8031958..8032244 | 17..303 | 100 | -> | Plus |
| 2R | 8033305..8033423 | 304..422 | 100 | -> | Plus |
| 2R | 8034291..8034540 | 423..672 | 100 | -> | Plus |
| 2R | 8041193..8041999 | 673..1479 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:02 Download gff for
BS04688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3919463..3919749 | 17..303 | 100 | -> | Plus |
| arm_2R | 3920810..3920928 | 304..422 | 100 | -> | Plus |
| arm_2R | 3921796..3922045 | 423..672 | 100 | -> | Plus |
| arm_2R | 3928698..3929504 | 673..1479 | 100 | | Plus |
BS04688.pep Sequence
Translation from 16 to 1479
> BS04688.pep
MAVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLE
DSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYA
IIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLP
PTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQV
GNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTPSDSSDS
DISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKPRDLSGSLPL
PLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTGPGCLPPFKLDAATS
LFSAGCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLH
HPAYAAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGG
NQHHEPTTTGYHHSGQLMLHRPFSTSPELKHSAPEIT*
BS04688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-PC | 492 | CG18455-PC | 1..487 | 1..487 | 2607 | 100 | Plus |
| Optix-PA | 487 | CG18455-PA | 1..487 | 1..487 | 2607 | 100 | Plus |
| Optix-PB | 259 | CG18455-PB | 1..259 | 229..487 | 1397 | 100 | Plus |
| so-PA | 416 | CG11121-PA | 98..393 | 32..350 | 633 | 43 | Plus |
| Six4-PB | 392 | CG3871-PB | 159..352 | 15..212 | 516 | 51.5 | Plus |
