Clone Sequence Records
BS04690.complete Sequence
2123 bp assembled on 2009-12-07
GenBank Submission: KX794705
> BS04690.complete
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAG
CAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATC
AGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTC
AGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGAC
ATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTCCATGGGCCGCG
CCCTGAGCGTGTTGCTCGCCGAGCAGCAGCAGATCGCGCCCCTCACGCTT
TATAATGCCCAGCAGCTAACTAGAAGGATAGAAGCGCTAAGCAGTCAACA
GCGGCTACTTAAAGCGGAGCGGGAAACGTTTCGCCAACGAAACGAGCGCA
CCCGTCAACTTCTGAAGGAGATGAGAGAACAGCGGGAGGCACAGCAATGG
GAGCTCCACAGCCAGCGACATCGACTGGAAAAAGAACGTCTGGAGCTACG
AACCCTGGCACCTCAACATCTGGAACAGCGCGATCAAAAAAGACAAATAG
AACGGCAGGTGGAGCGCCGAATGTCCACACTGGTGTTGGAGCTACAGGAG
ATCTATAACATCCAGAATGTGGGCGGTCGGCAATTTAGTATCTGCGGCAT
CGCCTTCCCCCACATGGAGCAATACACGAGCGAGTCACGTCAGGCGGCAA
ACGCACAGCTTCTGGATAACGTCTCGCCGCTGGCAGTGAGTGCGGCACTG
GGTTATGTTGCCCATTTGGTGCAGATGTTAGCCATCATTATGGATCGACC
TCTGAGGAACCGTATTCTGTACGAGCCATCGAAAGCAAGGATAGTGGACG
ATATCAAAGAGTTGACGTACACAACAAGAGAATTTCCTCTGTATACACGC
TCCATTTTGCCGTCGCAGCAAACAAAGTATGCCATCTACCTTTTGCGCCA
GAATGTTTCGCAGCTGTGCTTCGACATCACGGGCCAGTGCGATCTGCGAA
ACACTTTTGGCAATCTGCTGGAGCTATTCAGCACTCTTCGCTACATCGAA
CGAACGCAAAGGGATGAGGTCGACGAACGGGATGGAACTGCAGTTGGAGC
TGGCTGTGGAGAAGCACGCTTGGCAAATGGGTTGACGGCGCCGCACCTGT
CGCAATCGCACTCTTCGGTCGACATGAATCATGTGCCACTGCCGACTGGC
GTCAATGCGGTCAAGGATGCACTGCTCCAGCAGCTGTTGCCGCCGGGTGT
GAGTGAGGCACTGGCAATCGAAGGCTATGCGTCAACTCAACGCATTTGCC
GTTCGGTGGGGTCCTATTCAGATGGCGAGGATGAGTTTCGCCCGCGACTG
GAGCATAACTATTCCAATTCGGACTCCAACATAACTCTGCAAACTGAGCG
CAGCTGAAAGCTTTCTAGACCAT
BS04690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uvrag-RA | 2091 | CG6116-PA | 1..2091 | 17..2107 | 10455 | 100 | Plus |
Uvrag-RB | 2088 | CG6116-PB | 1..2088 | 17..2107 | 10375 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uvrag-RA | 2520 | CG6116-RA | 164..2254 | 17..2107 | 10455 | 100 | Plus |
Uvrag-RB | 2465 | CG6116-RB | 112..2199 | 17..2107 | 10375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13287373..13288245 | 390..1262 | 4365 | 100 | Plus |
2L | 23513712 | 2L | 13288680..13289090 | 1582..1992 | 2055 | 100 | Plus |
2L | 23513712 | 2L | 13286940..13287313 | 17..390 | 1870 | 100 | Plus |
2L | 23513712 | 2L | 13288303..13288627 | 1257..1581 | 1625 | 100 | Plus |
2L | 23513712 | 2L | 13289175..13289290 | 1992..2107 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:37 has no hits.
BS04690.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:31 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-RA | 151..2240 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:51 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 164..2253 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:52 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-RA | 151..2240 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:38 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 164..2253 | 17..2106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:38 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
2L | 13287374..13288241 | 391..1258 | 100 | -> | Plus |
2L | 13288305..13288627 | 1259..1581 | 100 | -> | Plus |
2L | 13288680..13289090 | 1582..1992 | 100 | -> | Plus |
2L | 13289176..13289289 | 1993..2106 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:51 Download gff for
BS04690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
arm_2L | 13287374..13288241 | 391..1258 | 100 | -> | Plus |
arm_2L | 13288305..13288627 | 1259..1581 | 100 | -> | Plus |
arm_2L | 13288680..13289090 | 1582..1992 | 100 | -> | Plus |
arm_2L | 13289176..13289289 | 1993..2106 | 100 | | Plus |
BS04690.3prime Sequence
912 bp (786 high quality bases) assembled on 2005-12-02
> BS04690.3prime
ATGGTCTAGAAAGCTTTCAGCTGCGCTCAGTTTGCAGAGTTATGTTGGAG
TCCGAATTGGAATAGTTATGCTCCAGTCGCGGGCGAAACTCATCCTCGCC
ATCTGAATAGGACCCCACCGAACGGCAAATGCGTTGAGTTGACGCATAGC
CTTCGATTGCCAGTGCCTCACTCACACCCGGCGGCAACAGCTGCTGGAGC
AGTGCATCCTTGACCGCATTGACGCCAGTCGGCAGTGGCACATGATTCAT
GTCGACCGAAGAGTGCGATTGCGACAGGTGCGGCGCCGTCAACCCATTTG
CCAAGCGTGCTTCTCCACAGCCAGCTCCAACTGCAGTTCCATCCCGTTCG
TCGACCTCATCCCTTTGCGTTCGTTCGATGTAGCGAAGAGTGCTGAATAG
CTCCAGCAGATTGCCAAAAGTGTTTCGCAGATCGCACTGGCCCGTGATGT
CGAAGCACAGCTGCGAAACATTCTGGCGCAAAAGGTAGATGGCATACTTT
GTTTGCTGCGACGGCAAAATGGAGCGTGTATACAGAGGAAATTCTCTTGT
TGTGTACGTCAACTCTTTGATATCGTCCACTATCCTTGCTTTCGATGGCT
CGTACAGAATACGGTTCCTCAGAGGTCGATCCATAATGATGGCTAACATC
TGCACCAAATGGGCAACATAACCCAGTGCCGCACTCACTGCCAGCGGCGA
GACGTTATCCAGAAGCTGTGCGTTTGCCGCCTGACGTGACTCGCTCGTGT
ATTGCTCCATGTGGGGGAAGGCGATGCCGCAGATACTAAATTGCCGACCG
CCCACATTCTGGATGTTATAGATCTCCTGTAGCTCCAACACCAGTGTGGA
CATTCGGCGCTCCACCTGCCGTTCTATTTGTCTTTTTTGATCGCGCTGTT
CCAGATGTTGAG
BS04690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6116-PA | 2091 | CG6116-RA | 1196..2091 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uvrag-RB | 2465 | CG6116-RB | 1304..2199 | 912..17 | 4480 | 100 | Minus |
Uvrag-RA | 2520 | CG6116-RA | 1359..2254 | 912..17 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13288680..13289090 | 542..132 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 13288303..13288627 | 867..543 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 13289175..13289290 | 132..17 | 580 | 100 | Minus |
2L | 23513712 | 2L | 13288195..13288245 | 912..862 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:22:20 has no hits.
BS04690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:09 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-PA | 1196..2091 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:42 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-PA | 1196..2091 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:07 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 1359..2257 | 12..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:31 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 1359..2257 | 12..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:31 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13288305..13288627 | 543..865 | 100 | -> | Minus |
2L | 13288195..13288241 | 866..912 | 100 | -> | Minus |
2L | 13288680..13289090 | 132..542 | 100 | -> | Minus |
2L | 13289176..13289293 | 12..131 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:07 Download gff for
BS04690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13289176..13289293 | 12..131 | 98 | | Minus |
arm_2L | 13288195..13288241 | 866..912 | 100 | -> | Minus |
arm_2L | 13288305..13288627 | 543..865 | 100 | -> | Minus |
arm_2L | 13288680..13289090 | 132..542 | 100 | -> | Minus |
BS04690.5prime Sequence
941 bp (817 high quality bases) assembled on 2005-12-02
> BS04690.5prime
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAG
CAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATC
AGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTC
AGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGAC
ATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTCCA
BS04690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6116-PA | 2091 | CG6116-RA | 1..925 | 17..941 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uvrag-RA | 2520 | CG6116-RA | 164..1088 | 17..941 | 4625 | 100 | Plus |
Uvrag-RB | 2465 | CG6116-RB | 112..1033 | 17..941 | 4570 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13287373..13287924 | 390..941 | 2760 | 100 | Plus |
2L | 23513712 | 2L | 13286940..13287313 | 17..390 | 1870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:46:31 has no hits.
BS04690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:10 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:43 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6116-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:20:54 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 164..1087 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:10 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uvrag-RA | 164..1087 | 17..940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:10 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
2L | 13287374..13287923 | 391..940 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:20:54 Download gff for
BS04690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13286940..13287313 | 17..390 | 100 | -> | Plus |
arm_2L | 13287374..13287923 | 391..940 | 100 | | Plus |
BS04690.pep Sequence
Translation from 16 to 2106
> BS04690.pep
MNLRPRCRKWLPLATQQLRLRNLNRIQGFNIESWPHEKSLELDDPDDVLL
YYTLHTDKASEAFYTSEKLPQRHQQQKWAEICTDDEAWRKTNAQCVCVKV
WKHYSAERRDGQPPEVEQRHKDVFGRSQLTPSRLPRPPELLFSWGVYFSG
LIPLSPLTLSQCGRNCLVFQLNGEQFASPSMISEQALQSQLHLHYQKYAE
EEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEK
LLTLQRLQRLHQQKRRQMAEVCREIARLSVHCVTRNELRLKPRTTSLSGD
YSAHQYHSMGRALSVLLAEQQQIAPLTLYNAQQLTRRIEALSSQQRLLKA
ERETFRQRNERTRQLLKEMREQREAQQWELHSQRHRLEKERLELRTLAPQ
HLEQRDQKRQIERQVERRMSTLVLELQEIYNIQNVGGRQFSICGIAFPHM
EQYTSESRQAANAQLLDNVSPLAVSAALGYVAHLVQMLAIIMDRPLRNRI
LYEPSKARIVDDIKELTYTTREFPLYTRSILPSQQTKYAIYLLRQNVSQL
CFDITGQCDLRNTFGNLLELFSTLRYIERTQRDEVDERDGTAVGAGCGEA
RLANGLTAPHLSQSHSSVDMNHVPLPTGVNAVKDALLQQLLPPGVSEALA
IEGYASTQRICRSVGSYSDGEDEFRPRLEHNYSNSDSNITLQTERS*
BS04690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uvrag-PA | 696 | CG6116-PA | 1..696 | 1..696 | 3597 | 100 | Plus |
Uvrag-PB | 695 | CG6116-PB | 1..695 | 1..696 | 3580 | 99.9 | Plus |