Clone BS04690 Report

Search the DGRC for BS04690

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptUvrag-RA
Protein status:BS04690.pep: full length peptide match
Sequenced Size:2123

Clone Sequence Records

BS04690.complete Sequence

2123 bp assembled on 2009-12-07

GenBank Submission: KX794705

> BS04690.complete
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAG
CAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATC
AGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTC
AGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGAC
ATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTCCATGGGCCGCG
CCCTGAGCGTGTTGCTCGCCGAGCAGCAGCAGATCGCGCCCCTCACGCTT
TATAATGCCCAGCAGCTAACTAGAAGGATAGAAGCGCTAAGCAGTCAACA
GCGGCTACTTAAAGCGGAGCGGGAAACGTTTCGCCAACGAAACGAGCGCA
CCCGTCAACTTCTGAAGGAGATGAGAGAACAGCGGGAGGCACAGCAATGG
GAGCTCCACAGCCAGCGACATCGACTGGAAAAAGAACGTCTGGAGCTACG
AACCCTGGCACCTCAACATCTGGAACAGCGCGATCAAAAAAGACAAATAG
AACGGCAGGTGGAGCGCCGAATGTCCACACTGGTGTTGGAGCTACAGGAG
ATCTATAACATCCAGAATGTGGGCGGTCGGCAATTTAGTATCTGCGGCAT
CGCCTTCCCCCACATGGAGCAATACACGAGCGAGTCACGTCAGGCGGCAA
ACGCACAGCTTCTGGATAACGTCTCGCCGCTGGCAGTGAGTGCGGCACTG
GGTTATGTTGCCCATTTGGTGCAGATGTTAGCCATCATTATGGATCGACC
TCTGAGGAACCGTATTCTGTACGAGCCATCGAAAGCAAGGATAGTGGACG
ATATCAAAGAGTTGACGTACACAACAAGAGAATTTCCTCTGTATACACGC
TCCATTTTGCCGTCGCAGCAAACAAAGTATGCCATCTACCTTTTGCGCCA
GAATGTTTCGCAGCTGTGCTTCGACATCACGGGCCAGTGCGATCTGCGAA
ACACTTTTGGCAATCTGCTGGAGCTATTCAGCACTCTTCGCTACATCGAA
CGAACGCAAAGGGATGAGGTCGACGAACGGGATGGAACTGCAGTTGGAGC
TGGCTGTGGAGAAGCACGCTTGGCAAATGGGTTGACGGCGCCGCACCTGT
CGCAATCGCACTCTTCGGTCGACATGAATCATGTGCCACTGCCGACTGGC
GTCAATGCGGTCAAGGATGCACTGCTCCAGCAGCTGTTGCCGCCGGGTGT
GAGTGAGGCACTGGCAATCGAAGGCTATGCGTCAACTCAACGCATTTGCC
GTTCGGTGGGGTCCTATTCAGATGGCGAGGATGAGTTTCGCCCGCGACTG
GAGCATAACTATTCCAATTCGGACTCCAACATAACTCTGCAAACTGAGCG
CAGCTGAAAGCTTTCTAGACCAT

BS04690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-RA 2091 CG6116-PA 1..2091 17..2107 10455 100 Plus
Uvrag-RB 2088 CG6116-PB 1..2088 17..2107 10375 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-RA 2520 CG6116-RA 164..2254 17..2107 10455 100 Plus
Uvrag-RB 2465 CG6116-RB 112..2199 17..2107 10375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13287373..13288245 390..1262 4365 100 Plus
2L 23513712 2L 13288680..13289090 1582..1992 2055 100 Plus
2L 23513712 2L 13286940..13287313 17..390 1870 100 Plus
2L 23513712 2L 13288303..13288627 1257..1581 1625 100 Plus
2L 23513712 2L 13289175..13289290 1992..2107 580 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:10:37 has no hits.

BS04690.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:31 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 151..2240 17..2106 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:51 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 164..2253 17..2106 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:52 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
CG6116-RA 151..2240 17..2106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:38 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 164..2253 17..2106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:38 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13286940..13287313 17..390 100 -> Plus
2L 13287374..13288241 391..1258 100 -> Plus
2L 13288305..13288627 1259..1581 100 -> Plus
2L 13288680..13289090 1582..1992 100 -> Plus
2L 13289176..13289289 1993..2106 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:51 Download gff for BS04690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13286940..13287313 17..390 100 -> Plus
arm_2L 13287374..13288241 391..1258 100 -> Plus
arm_2L 13288305..13288627 1259..1581 100 -> Plus
arm_2L 13288680..13289090 1582..1992 100 -> Plus
arm_2L 13289176..13289289 1993..2106 100   Plus

BS04690.3prime Sequence

912 bp (786 high quality bases) assembled on 2005-12-02

> BS04690.3prime
ATGGTCTAGAAAGCTTTCAGCTGCGCTCAGTTTGCAGAGTTATGTTGGAG
TCCGAATTGGAATAGTTATGCTCCAGTCGCGGGCGAAACTCATCCTCGCC
ATCTGAATAGGACCCCACCGAACGGCAAATGCGTTGAGTTGACGCATAGC
CTTCGATTGCCAGTGCCTCACTCACACCCGGCGGCAACAGCTGCTGGAGC
AGTGCATCCTTGACCGCATTGACGCCAGTCGGCAGTGGCACATGATTCAT
GTCGACCGAAGAGTGCGATTGCGACAGGTGCGGCGCCGTCAACCCATTTG
CCAAGCGTGCTTCTCCACAGCCAGCTCCAACTGCAGTTCCATCCCGTTCG
TCGACCTCATCCCTTTGCGTTCGTTCGATGTAGCGAAGAGTGCTGAATAG
CTCCAGCAGATTGCCAAAAGTGTTTCGCAGATCGCACTGGCCCGTGATGT
CGAAGCACAGCTGCGAAACATTCTGGCGCAAAAGGTAGATGGCATACTTT
GTTTGCTGCGACGGCAAAATGGAGCGTGTATACAGAGGAAATTCTCTTGT
TGTGTACGTCAACTCTTTGATATCGTCCACTATCCTTGCTTTCGATGGCT
CGTACAGAATACGGTTCCTCAGAGGTCGATCCATAATGATGGCTAACATC
TGCACCAAATGGGCAACATAACCCAGTGCCGCACTCACTGCCAGCGGCGA
GACGTTATCCAGAAGCTGTGCGTTTGCCGCCTGACGTGACTCGCTCGTGT
ATTGCTCCATGTGGGGGAAGGCGATGCCGCAGATACTAAATTGCCGACCG
CCCACATTCTGGATGTTATAGATCTCCTGTAGCTCCAACACCAGTGTGGA
CATTCGGCGCTCCACCTGCCGTTCTATTTGTCTTTTTTGATCGCGCTGTT
CCAGATGTTGAG

BS04690.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6116-PA 2091 CG6116-RA 1196..2091 912..17 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-RB 2465 CG6116-RB 1304..2199 912..17 4480 100 Minus
Uvrag-RA 2520 CG6116-RA 1359..2254 912..17 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13288680..13289090 542..132 2055 100 Minus
2L 23513712 2L 13288303..13288627 867..543 1625 100 Minus
2L 23513712 2L 13289175..13289290 132..17 580 100 Minus
2L 23513712 2L 13288195..13288245 912..862 255 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:22:20 has no hits.

BS04690.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:09 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6116-PA 1196..2091 17..912 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:42 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6116-PA 1196..2091 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:04:07 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 1359..2257 12..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:31 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 1359..2257 12..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:31 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13288305..13288627 543..865 100 -> Minus
2L 13288195..13288241 866..912 100 -> Minus
2L 13288680..13289090 132..542 100 -> Minus
2L 13289176..13289293 12..131 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:04:07 Download gff for BS04690.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13289176..13289293 12..131 98   Minus
arm_2L 13288195..13288241 866..912 100 -> Minus
arm_2L 13288305..13288627 543..865 100 -> Minus
arm_2L 13288680..13289090 132..542 100 -> Minus

BS04690.5prime Sequence

941 bp (817 high quality bases) assembled on 2005-12-02

> BS04690.5prime
GAAGTTATCAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGC
CCCTAGCCACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGA
TTCAATATTGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCC
GGATGATGTGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAG
CGTTCTACACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGG
GCGGAGATTTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTG
TGTCTGTGTCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCC
AACCGCCTGAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAG
TTAACGCCCAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGG
CGTCTACTTCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGT
GCGGACGAAATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCC
CCGTCGATGATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTA
CCAAAAGTATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCA
TAAACTCGCCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGT
ACGATGCGCTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAG
CAACAACCTCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATC
AGCAGAAGCGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTC
AGTGTACACTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGAC
ATCGCTGTCCGGCGACTACTCCGCCCATCAGTACCATTCCA

BS04690.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6116-PA 2091 CG6116-RA 1..925 17..941 4625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-RA 2520 CG6116-RA 164..1088 17..941 4625 100 Plus
Uvrag-RB 2465 CG6116-RB 112..1033 17..941 4570 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13287373..13287924 390..941 2760 100 Plus
2L 23513712 2L 13286940..13287313 17..390 1870 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:46:31 has no hits.

BS04690.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:10 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6116-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:43 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6116-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:20:54 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 164..1087 17..940 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:10 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
Uvrag-RA 164..1087 17..940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:10 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13286940..13287313 17..390 100 -> Plus
2L 13287374..13287923 391..940 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:20:54 Download gff for BS04690.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13286940..13287313 17..390 100 -> Plus
arm_2L 13287374..13287923 391..940 100   Plus

BS04690.pep Sequence

Translation from 16 to 2106

> BS04690.pep
MNLRPRCRKWLPLATQQLRLRNLNRIQGFNIESWPHEKSLELDDPDDVLL
YYTLHTDKASEAFYTSEKLPQRHQQQKWAEICTDDEAWRKTNAQCVCVKV
WKHYSAERRDGQPPEVEQRHKDVFGRSQLTPSRLPRPPELLFSWGVYFSG
LIPLSPLTLSQCGRNCLVFQLNGEQFASPSMISEQALQSQLHLHYQKYAE
EEKLEEPQDEGINSPAVSRSSSPVLRMSTMRYAQLKCQRQEIRRSNNLEK
LLTLQRLQRLHQQKRRQMAEVCREIARLSVHCVTRNELRLKPRTTSLSGD
YSAHQYHSMGRALSVLLAEQQQIAPLTLYNAQQLTRRIEALSSQQRLLKA
ERETFRQRNERTRQLLKEMREQREAQQWELHSQRHRLEKERLELRTLAPQ
HLEQRDQKRQIERQVERRMSTLVLELQEIYNIQNVGGRQFSICGIAFPHM
EQYTSESRQAANAQLLDNVSPLAVSAALGYVAHLVQMLAIIMDRPLRNRI
LYEPSKARIVDDIKELTYTTREFPLYTRSILPSQQTKYAIYLLRQNVSQL
CFDITGQCDLRNTFGNLLELFSTLRYIERTQRDEVDERDGTAVGAGCGEA
RLANGLTAPHLSQSHSSVDMNHVPLPTGVNAVKDALLQQLLPPGVSEALA
IEGYASTQRICRSVGSYSDGEDEFRPRLEHNYSNSDSNITLQTERS*

BS04690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Uvrag-PA 696 CG6116-PA 1..696 1..696 3597 100 Plus
Uvrag-PB 695 CG6116-PB 1..695 1..696 3580 99.9 Plus