Clone Sequence Records
BS04692.3prime Sequence
895 bp (890 high quality bases) assembled on 2005-12-02
> BS04692.3prime
ATGGTCTAGAAAGCTTTCATGAAAGTTTTTTCAGTTCTTTGGTTGGACAT
TCAGCTACAATAGGTTGACTCCCGGAACTGCTGTCCTCTTTCGTTGTCGG
AGTCTCAGCGGAGTATTCTTCATGCGCGAGTTGCATAAAAACCAAATCTT
CTTTTGCCGGAAAATCAGCGAGTACTGTAATGCCAATGTTGTTATCCGGC
AGCGCAGGCGTTTCCTCGTGGTACCCAAACCAATAGATTATCATTCCAGG
ACCAAAACGATTGCAGTAGCTTTGCAGCTGCTGTTGGATGTTCGACTTGT
GTCCCTTGGTGTCCCCAAAATTGGCCTTGCTCTCGATCCAGTTGATCACA
GAGCCTTTGTAAAGAAATGGCAGGATCATCTTGATGTCCGGCGTCTTGTC
ATATCCCATGCGTCGCAAATCTTTCTCGTCGTAGAAATGGATACCCGCCT
CCTTAGCCAGATTCTTAAGCTTAAGCTCGTACTCCTCGCCAACTATGCGG
CGTCGCAGGTCCGTTATGGATCCCTCTTGATTGTCGCTGACTATGCACTG
CTGCACATTGGCCGCCAGCTTGGGATCGTCGATAAGATGCGGATGCCTAA
GAAGCTGTGAGATGTGCGATCGATGCCGATCCTTGTACTTCTCCTGCAGC
AACATCCTGCAGAGAGCCACCGGGTTCAGTGCTTCGGCACAAGCCATTCG
GATCAGTAGGGCATTGTCGTAGTATAGGTTTTTCTGCTCCTCGTAGGCTT
TGAGAAGCCTTTTCCCGCGCTGATCCTGCTTCCAGTGACCACGCGACCGG
TTAAAAAGCTCCGACTGCAGGATGCATGTCAATGCCATTGGCTCCACGTC
CCTGAAGAAGCGATTCCCTCACTCGAACTCGCAGTCGATGGGCCA
BS04692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 990 | CG12713-RA | 140..990 | 867..17 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 180..1056 | 891..15 | 4340 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 746..258 | 2445 | 100 | Minus |
3L | 28110227 | 3L | 15833409..15833652 | 258..15 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 15832643..15832787 | 891..747 | 680 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:26:16 has no hits.
BS04692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:13 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 114..990 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:48 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 114..990 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:55 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 178..1058 | 12..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:12 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 178..1058 | 12..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:12 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832641..15832787 | 747..894 | 97 | -> | Minus |
3L | 15832856..15833344 | 258..746 | 100 | -> | Minus |
3L | 15833410..15833654 | 12..257 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:55 Download gff for
BS04692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825741..15825887 | 747..894 | 97 | -> | Minus |
arm_3L | 15825956..15826444 | 258..746 | 100 | -> | Minus |
arm_3L | 15826510..15826754 | 12..257 | 99 | | Minus |
BS04692.5prime Sequence
951 bp (869 high quality bases) assembled on 2005-11-29
> BS04692.5prime
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTTATGCACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACNACGAAAGAGGACAGCAGTTTCC
G
BS04692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 990 | CG12713-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG12713-PA | 990 | CG12713-RA | 876..931 | 892..947 | 261 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 65..995 | 17..947 | 4599 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 277..765 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 15832528..15832787 | 17..276 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 15833409..15833591 | 765..947 | 829 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:50:55 has no hits.
BS04692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:14 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 1..934 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:49 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-PA | 1..934 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:08 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 62..998 | 14..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:45 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 62..998 | 14..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:45 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832525..15832787 | 14..276 | 99 | -> | Plus |
3L | 15832856..15833344 | 277..765 | 100 | -> | Plus |
3L | 15833410..15833594 | 766..951 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:08 Download gff for
BS04692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825625..15825887 | 14..276 | 99 | -> | Plus |
arm_3L | 15825956..15826444 | 277..765 | 100 | -> | Plus |
arm_3L | 15826510..15826694 | 766..951 | 97 | | Plus |
BS04692.complete Sequence
1022 bp (1022 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635010
> BS04692.complete
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACAACGAAAGAGGACAGCAGTTCCG
GGAGTCAACCTATTGTAGCTGAATGTCCAACCAAAGAACTGAAAAAACTT
TCATGAAAGCTTTCTAGACCAT
BS04692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 990 | CG12713-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-RA | 1351 | CG12713-RA | 65..1056 | 17..1008 | 4960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15832856..15833344 | 277..765 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 15832528..15832787 | 17..276 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 15833409..15833652 | 765..1008 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:48 has no hits.
BS04692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:36 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:52 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 66..1062 | 14..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:40 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 65..1053 | 17..1005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:36 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 66..1062 | 14..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:18 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12713-RA | 65..1053 | 17..1005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:18 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15832528..15832787 | 17..276 | 100 | -> | Plus |
3L | 15832856..15833344 | 277..765 | 100 | -> | Plus |
3L | 15833410..15833649 | 766..1005 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:40 Download gff for
BS04692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15825628..15825887 | 17..276 | 100 | -> | Plus |
arm_3L | 15825956..15826444 | 277..765 | 100 | -> | Plus |
arm_3L | 15826510..15826749 | 766..1005 | 100 | | Plus |
BS04692.pep Sequence
Translation from 16 to 1005
> BS04692.pep
MMSQIPDLAGGNGQQKRKILSGGEYNKICRFINGFHGLAIDCEFELRNRF
FRDVEPMALTCILQSELFNRSRGHWKQDQRGKRLLKAYEEQKNLYYDNAL
LIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAAN
VQQCIVSDNQEGSITDLRRRIVGEEYELKLKNLAKEAGIHFYDEKDLRRM
GYDKTPDIKMILPFLYKGSVINWIESKANFGDTKGHKSNIQQQLQSYCNR
FGPGMIIYWFGYHEETPALPDNNIGITVLADFPAKEDLVFMQLAHEEYSA
ETPTTKEDSSSGSQPIVAECPTKELKKLS*
BS04692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12713-PA | 329 | CG12713-PA | 1..329 | 1..329 | 1745 | 100 | Plus |