Clone BS04692 Report

Search the DGRC for BS04692

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG12713-RA
Protein status:BS04692.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04692.3prime Sequence

895 bp (890 high quality bases) assembled on 2005-12-02

> BS04692.3prime
ATGGTCTAGAAAGCTTTCATGAAAGTTTTTTCAGTTCTTTGGTTGGACAT
TCAGCTACAATAGGTTGACTCCCGGAACTGCTGTCCTCTTTCGTTGTCGG
AGTCTCAGCGGAGTATTCTTCATGCGCGAGTTGCATAAAAACCAAATCTT
CTTTTGCCGGAAAATCAGCGAGTACTGTAATGCCAATGTTGTTATCCGGC
AGCGCAGGCGTTTCCTCGTGGTACCCAAACCAATAGATTATCATTCCAGG
ACCAAAACGATTGCAGTAGCTTTGCAGCTGCTGTTGGATGTTCGACTTGT
GTCCCTTGGTGTCCCCAAAATTGGCCTTGCTCTCGATCCAGTTGATCACA
GAGCCTTTGTAAAGAAATGGCAGGATCATCTTGATGTCCGGCGTCTTGTC
ATATCCCATGCGTCGCAAATCTTTCTCGTCGTAGAAATGGATACCCGCCT
CCTTAGCCAGATTCTTAAGCTTAAGCTCGTACTCCTCGCCAACTATGCGG
CGTCGCAGGTCCGTTATGGATCCCTCTTGATTGTCGCTGACTATGCACTG
CTGCACATTGGCCGCCAGCTTGGGATCGTCGATAAGATGCGGATGCCTAA
GAAGCTGTGAGATGTGCGATCGATGCCGATCCTTGTACTTCTCCTGCAGC
AACATCCTGCAGAGAGCCACCGGGTTCAGTGCTTCGGCACAAGCCATTCG
GATCAGTAGGGCATTGTCGTAGTATAGGTTTTTCTGCTCCTCGTAGGCTT
TGAGAAGCCTTTTCCCGCGCTGATCCTGCTTCCAGTGACCACGCGACCGG
TTAAAAAGCTCCGACTGCAGGATGCATGTCAATGCCATTGGCTCCACGTC
CCTGAAGAAGCGATTCCCTCACTCGAACTCGCAGTCGATGGGCCA

BS04692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 990 CG12713-RA 140..990 867..17 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 180..1056 891..15 4340 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 746..258 2445 100 Minus
3L 28110227 3L 15833409..15833652 258..15 1220 100 Minus
3L 28110227 3L 15832643..15832787 891..747 680 97.9 Minus
Blast to na_te.dros performed on 2015-01-31 14:26:16 has no hits.

BS04692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:13 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 114..990 17..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:48 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 114..990 17..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:55 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 178..1058 12..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:12 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 178..1058 12..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:12 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15832641..15832787 747..894 97 -> Minus
3L 15832856..15833344 258..746 100 -> Minus
3L 15833410..15833654 12..257 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:55 Download gff for BS04692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825741..15825887 747..894 97 -> Minus
arm_3L 15825956..15826444 258..746 100 -> Minus
arm_3L 15826510..15826754 12..257 99   Minus

BS04692.5prime Sequence

951 bp (869 high quality bases) assembled on 2005-11-29

> BS04692.5prime
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTTATGCACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACNACGAAAGAGGACAGCAGTTTCC
G

BS04692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 990 CG12713-RA 1..870 17..886 4350 100 Plus
CG12713-PA 990 CG12713-RA 876..931 892..947 261 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 65..995 17..947 4599 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 277..765 2445 100 Plus
3L 28110227 3L 15832528..15832787 17..276 1300 100 Plus
3L 28110227 3L 15833409..15833591 765..947 829 96.7 Plus
Blast to na_te.dros performed on 2015-02-11 11:50:55 has no hits.

BS04692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:14 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 1..934 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:49 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-PA 1..934 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:08 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 62..998 14..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:45 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 62..998 14..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:45 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15832525..15832787 14..276 99 -> Plus
3L 15832856..15833344 277..765 100 -> Plus
3L 15833410..15833594 766..951 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:08 Download gff for BS04692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825625..15825887 14..276 99 -> Plus
arm_3L 15825956..15826444 277..765 100 -> Plus
arm_3L 15826510..15826694 766..951 97   Plus

BS04692.complete Sequence

1022 bp (1022 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635010

> BS04692.complete
GAAGTTATCAGTCGACATGATGTCCCAAATTCCGGATTTGGCCGGCGGAA
ATGGGCAACAGAAGCGAAAGATTCTGAGCGGCGGCGAATACAATAAGATT
TGCCGGTTTATCAACGGCTTCCACGGCTTGGCCATCGACTGCGAGTTCGA
GTTGAGGAATCGCTTCTTCAGGGACGTGGAGCCAATGGCATTGACATGCA
TCCTGCAGTCGGAGCTTTTTAACCGGTCGCGTGGTCACTGGAAGCAGGAT
CAGCGCGGGAAAAGGCTTCTCAAAGCCTACGAGGAGCAGAAAAACCTATA
CTACGACAATGCCCTACTGATCCGAATGGCTTGTGCCGAAGCACTGAACC
CGGTGGCTCTCTGCAGGATGTTGCTGCAGGAGAAGTACAAGGATCGGCAT
CGATCGCACATCTCACAGCTTCTTAGGCATCCGCATCTTATCGACGATCC
CAAGCTGGCGGCCAATGTGCAGCAGTGCATAGTCAGCGACAATCAAGAGG
GATCCATAACGGACCTGCGACGCCGCATAGTTGGCGAGGAGTACGAGCTT
AAGCTTAAGAATCTGGCTAAGGAGGCGGGTATCCATTTCTACGACGAGAA
AGATTTGCGACGCATGGGATATGACAAGACGCCGGACATCAAGATGATCC
TGCCATTTCTTTACAAAGGCTCTGTGATCAACTGGATCGAGAGCAAGGCC
AATTTTGGGGACACCAAGGGACACAAGTCGAACATCCAACAGCAGCTGCA
AAGCTACTGCAATCGTTTTGGTCCTGGAATGATAATCTATTGGTTTGGGT
ACCACGAGGAAACGCCTGCGCTGCCGGATAACAACATTGGCATTACAGTA
CTCGCTGATTTTCCGGCAAAAGAAGATTTGGTTTTTATGCAACTCGCGCA
TGAAGAATACTCCGCTGAGACTCCGACAACGAAAGAGGACAGCAGTTCCG
GGAGTCAACCTATTGTAGCTGAATGTCCAACCAAAGAACTGAAAAAACTT
TCATGAAAGCTTTCTAGACCAT

BS04692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 990 CG12713-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-RA 1351 CG12713-RA 65..1056 17..1008 4960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15832856..15833344 277..765 2445 100 Plus
3L 28110227 3L 15832528..15832787 17..276 1300 100 Plus
3L 28110227 3L 15833409..15833652 765..1008 1220 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:09:48 has no hits.

BS04692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:36 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 1..990 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:52 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 66..1062 14..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:40 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 65..1053 17..1005 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:36 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 66..1062 14..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:18 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
CG12713-RA 65..1053 17..1005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:18 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15832528..15832787 17..276 100 -> Plus
3L 15832856..15833344 277..765 100 -> Plus
3L 15833410..15833649 766..1005 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:40 Download gff for BS04692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15825628..15825887 17..276 100 -> Plus
arm_3L 15825956..15826444 277..765 100 -> Plus
arm_3L 15826510..15826749 766..1005 100   Plus

BS04692.pep Sequence

Translation from 16 to 1005

> BS04692.pep
MMSQIPDLAGGNGQQKRKILSGGEYNKICRFINGFHGLAIDCEFELRNRF
FRDVEPMALTCILQSELFNRSRGHWKQDQRGKRLLKAYEEQKNLYYDNAL
LIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAAN
VQQCIVSDNQEGSITDLRRRIVGEEYELKLKNLAKEAGIHFYDEKDLRRM
GYDKTPDIKMILPFLYKGSVINWIESKANFGDTKGHKSNIQQQLQSYCNR
FGPGMIIYWFGYHEETPALPDNNIGITVLADFPAKEDLVFMQLAHEEYSA
ETPTTKEDSSSGSQPIVAECPTKELKKLS*

BS04692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12713-PA 329 CG12713-PA 1..329 1..329 1745 100 Plus