Clone BS04693 Report

Search the DGRC for BS04693

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptvig-RA
Protein status:BS04693.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04693.3prime Sequence

910 bp (868 high quality bases) assembled on 2005-12-02

> BS04693.3prime
ATGGTCTAGAAAGCTTTTAAGCCAGAGTGGGAAACTGACGCTCATCGTTG
ACCTTGGGAGCGGTGTTCTGTTGTCGCTCAAAACGCTTATTCGGCCCTGG
ACCGCTGTTCTGATTGTTGTTCTGGTTGTTTCCCGGACCGCGACGATCGA
TGGGTGGCCTTTGATTTTGAGCGGATGAACCGCCGCCCTCGTTATTATGC
TGCTGGCCATCCCGTGGGCCACGGTTTCCACCCTCACGATTATCTCGGCC
GCCCTCACGATTGCCGCCATCGCGGTTGCCACCCTCGCTGCGTGGTCCGC
CTCCAAATCCACCGGGTCTGGGGCCTCCACGGCCACCGCGTCCACCGAAA
CCGCCAGGTCCGCCACGACGACCATCGTTGAAATTGAACTGAATGTCCAG
GACGCGCTGTTGCCTGCCCACACGCTGTGGATAAAGGGCAGGGTCGTACT
CGAGCTCCTCTTCGCTGTCGTTCTCCTTCTTCTTGTTGCTAGTTAGGACG
ACCATTTTCTTCCATTGTGTGGTGTCCTCACCTTCTCCAGCCTTGCGGAT
ATTAAAGGTTGGCTTGATGCGCTGTCCTTGCTGTGCCTTCCACTCGTCCA
AGGTCAGCTCTTTGGCTTCCTCCTCGGCGGTAGCCTGCTCGTTTTGTGGT
TCAGTGCCAGATTCATCGGCCTTGGCGCCGCCCTCGGCATTGGTCACATT
GGTTTCGCTTTCGTTCTTGTTCACATCATCAATAGCCTCCTTGACCGATC
CCCAGTTGTGGGAGCCAGCTCCATCGCGTTTGTCAATTGACTTCACACCA
GTTCTATCGGAACCCGACTGGCGGTCGAACTCGCGCTTCCTGTTCTGGCC
ATCGTAGTTGCGGTTCTGACGCTGGGGACGATCTCCGCCAGCACCTGGGC
CTCCACCTGG

BS04693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4170-PD 1473 vig-RD 580..1473 910..17 4470 100 Minus
CG4170-PC 1473 vig-RC 580..1473 910..17 4470 100 Minus
CG4170-PA 1473 vig-RA 580..1473 910..17 4470 100 Minus
CG4170-PB 1473 vig-RB 580..1473 910..17 4470 100 Minus
CG11844-PC 1239 CG11844-RC 433..497 838..774 200 92.3 Minus
CG11844-PA 1239 CG11844-RA 433..497 838..774 200 92.3 Minus
CG11844-PB 1332 CG11844-RB 526..590 838..774 200 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
vig-RB 3164 CG4170-RB 768..1662 910..16 4475 100 Minus
vig-RA 1918 CG4170-RA 805..1699 910..16 4475 100 Minus
vig-RC 1838 CG4170-RC 725..1619 910..16 4475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15064433..15064950 16..533 2590 100 Plus
2L 23513712 2L 15065187..15065457 529..799 1355 100 Plus
2L 23513712 2L 15066934..15067048 796..910 575 100 Plus
Y 3667352 Y 3023805..3023918 485..372 240 80.7 Minus
3R 32079331 3R 25124888..25125001 485..372 240 80.7 Minus
Blast to na_te.dros performed on 2015-02-06 13:22:38 has no hits.

BS04693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:15 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
vig-PA 580..1473 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:52 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4170-PC 580..1473 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:08 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
vig-RC 725..1625 9..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:10 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
vig-RC 725..1625 9..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:10 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15064427..15064948 9..531 99 <- Plus
2L 15065190..15065456 532..798 100 <- Plus
2L 15066937..15067048 799..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:08 Download gff for BS04693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15064427..15064948 9..531 99 <- Plus
arm_2L 15065190..15065456 532..798 100 <- Plus
arm_2L 15066937..15067048 799..910 100   Plus

BS04693.5prime Sequence

801 bp (786 high quality bases) assembled on 2005-11-29

> BS04693.5prime
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
A

BS04693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4170-PD 1473 vig-RD 1..785 17..801 3925 100 Plus
CG4170-PC 1473 vig-RC 1..785 17..801 3925 100 Plus
CG4170-PA 1473 vig-RA 1..785 17..801 3925 100 Plus
CG4170-PB 1473 vig-RB 1..785 17..801 3925 100 Plus
CG11844-PC 1239 CG11844-RC 433..497 668..732 200 92.3 Plus
CG11844-PA 1239 CG11844-RA 433..497 668..732 200 92.3 Plus
CG11844-PB 1332 CG11844-RB 526..590 668..732 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
vig-RB 3164 CG4170-RB 188..973 16..801 3930 100 Plus
vig-RA 1918 CG4170-RA 225..1010 16..801 3930 100 Plus
vig-RC 1838 CG4170-RC 145..930 16..801 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15066934..15067628 710..16 3475 100 Minus
2L 23513712 2L 15065363..15065457 801..707 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:31:58 has no hits.

BS04693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:16 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
vig-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:53 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4170-PC 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:32 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
vig-RC 145..929 16..800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:47 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
vig-RC 145..929 16..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:47 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15065364..15065456 708..800 100 <- Minus
2L 15066937..15067628 16..707 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:32 Download gff for BS04693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15065364..15065456 708..800 100 <- Minus
arm_2L 15066937..15067628 16..707 100   Minus

BS04693.complete Sequence

1505 bp (1505 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635011

> BS04693.complete
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
AAACCAATGTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGAATCTGGC
ACTGAACCACAAAACGAGCAGGCTACCGCCGAGGAGGAAGCCAAAGAGCT
GACCTTGGACGAGTGGAAGGCACAGCAAGGACAGCGCATCAAGCCAACCT
TTAATATCCGCAAGGCTGGAGAAGGTGAGGACACCACACAATGGAAGAAA
ATGGTCGTCCTAACTAGCAACAAGAAGAAGGAGAACGACAGCGAAGAGGA
GCTCGAGTACGACCCTGCCCTTTATCCACAGCGTGTGGGCAGGCAACAGC
GCGTCCTGGACATTCAGTTCAATTTCAACGATGGTCGTCGTGGCGGACCT
GGCGGTTTCGGTGGACGCGGTGGCCGTGGAGGCCCCAGACCCGGTGGATT
TGGAGGCGGACCACGCAGCGAGGGTGGCAACCGCGATGGCGGCAATCGTG
AGGGCGGCCGAGATAATCGTGAGGGTGGAAACCGTGGCCCACGGGATGGC
CAGCAGCATAATAACGAGGGCGGCGGTTCATCCGCTCAAAATCAAAGGCC
ACCCATCGATCGTCGCGGTCCGGGAAACAACCAGAACAACAATCAGAACA
GCGGTCCAGGGCCGAATAAGCGTTTTGAGCGACAACAGAACACCGCTCCC
AAGGTCAACGATGAGCGTCAGTTTCCCACTCTGGCTTAAAAGCTTTCTAG
ACCAT

BS04693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
vig-RB 1473 CG4170-PB 1..1473 17..1489 7365 100 Plus
vig-RA 1473 CG4170-PA 1..1473 17..1489 7365 100 Plus
vig-RC 1473 CG4170-PC 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
vig-RB 3164 CG4170-RB 188..1662 16..1490 7375 100 Plus
vig-RA 1918 CG4170-RA 225..1699 16..1490 7375 100 Plus
vig-RC 1838 CG4170-RC 145..1619 16..1490 7375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15066934..15067628 710..16 3475 100 Minus
2L 23513712 2L 15064433..15064950 1490..973 2590 100 Minus
2L 23513712 2L 15065187..15065457 977..707 1355 100 Minus
Y 3667352 Y 3023805..3023918 1021..1134 240 80.7 Plus
3R 32079331 3R 25124888..25125001 1021..1134 240 80.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:58:19 has no hits.

BS04693.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:29 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 1..1473 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:37 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 203..1683 16..1497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:26 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RC 146..1616 17..1487 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:29 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RA 203..1683 16..1497 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:25 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
vig-RC 146..1616 17..1487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:25 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15064436..15064948 975..1487 100 <- Minus
2L 15065190..15065456 708..974 100 <- Minus
2L 15066937..15067627 17..707 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:26 Download gff for BS04693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15064436..15064948 975..1487 100 <- Minus
arm_2L 15065190..15065456 708..974 100 <- Minus
arm_2L 15066937..15067627 17..707 100   Minus

BS04693.pep Sequence

Translation from 16 to 1488

> BS04693.pep
MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA
TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF
TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ
QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA
GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK
EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW
KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP
ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR
SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR
GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*

BS04693.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
vig-PB 490 CG4170-PB 1..490 1..490 2614 100 Plus
vig-PA 490 CG4170-PA 1..490 1..490 2614 100 Plus
vig-PC 490 CG4170-PC 1..490 1..490 2614 100 Plus
vig-PD 490 CG4170-PD 1..490 1..490 2614 100 Plus
vig2-PD 412 CG11844-PD 1..411 1..489 716 41.7 Plus