Clone Sequence Records
BS04693.3prime Sequence
910 bp (868 high quality bases) assembled on 2005-12-02
> BS04693.3prime
ATGGTCTAGAAAGCTTTTAAGCCAGAGTGGGAAACTGACGCTCATCGTTG
ACCTTGGGAGCGGTGTTCTGTTGTCGCTCAAAACGCTTATTCGGCCCTGG
ACCGCTGTTCTGATTGTTGTTCTGGTTGTTTCCCGGACCGCGACGATCGA
TGGGTGGCCTTTGATTTTGAGCGGATGAACCGCCGCCCTCGTTATTATGC
TGCTGGCCATCCCGTGGGCCACGGTTTCCACCCTCACGATTATCTCGGCC
GCCCTCACGATTGCCGCCATCGCGGTTGCCACCCTCGCTGCGTGGTCCGC
CTCCAAATCCACCGGGTCTGGGGCCTCCACGGCCACCGCGTCCACCGAAA
CCGCCAGGTCCGCCACGACGACCATCGTTGAAATTGAACTGAATGTCCAG
GACGCGCTGTTGCCTGCCCACACGCTGTGGATAAAGGGCAGGGTCGTACT
CGAGCTCCTCTTCGCTGTCGTTCTCCTTCTTCTTGTTGCTAGTTAGGACG
ACCATTTTCTTCCATTGTGTGGTGTCCTCACCTTCTCCAGCCTTGCGGAT
ATTAAAGGTTGGCTTGATGCGCTGTCCTTGCTGTGCCTTCCACTCGTCCA
AGGTCAGCTCTTTGGCTTCCTCCTCGGCGGTAGCCTGCTCGTTTTGTGGT
TCAGTGCCAGATTCATCGGCCTTGGCGCCGCCCTCGGCATTGGTCACATT
GGTTTCGCTTTCGTTCTTGTTCACATCATCAATAGCCTCCTTGACCGATC
CCCAGTTGTGGGAGCCAGCTCCATCGCGTTTGTCAATTGACTTCACACCA
GTTCTATCGGAACCCGACTGGCGGTCGAACTCGCGCTTCCTGTTCTGGCC
ATCGTAGTTGCGGTTCTGACGCTGGGGACGATCTCCGCCAGCACCTGGGC
CTCCACCTGG
BS04693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4170-PD | 1473 | vig-RD | 580..1473 | 910..17 | 4470 | 100 | Minus |
CG4170-PC | 1473 | vig-RC | 580..1473 | 910..17 | 4470 | 100 | Minus |
CG4170-PA | 1473 | vig-RA | 580..1473 | 910..17 | 4470 | 100 | Minus |
CG4170-PB | 1473 | vig-RB | 580..1473 | 910..17 | 4470 | 100 | Minus |
CG11844-PC | 1239 | CG11844-RC | 433..497 | 838..774 | 200 | 92.3 | Minus |
CG11844-PA | 1239 | CG11844-RA | 433..497 | 838..774 | 200 | 92.3 | Minus |
CG11844-PB | 1332 | CG11844-RB | 526..590 | 838..774 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig-RB | 3164 | CG4170-RB | 768..1662 | 910..16 | 4475 | 100 | Minus |
vig-RA | 1918 | CG4170-RA | 805..1699 | 910..16 | 4475 | 100 | Minus |
vig-RC | 1838 | CG4170-RC | 725..1619 | 910..16 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15064433..15064950 | 16..533 | 2590 | 100 | Plus |
2L | 23513712 | 2L | 15065187..15065457 | 529..799 | 1355 | 100 | Plus |
2L | 23513712 | 2L | 15066934..15067048 | 796..910 | 575 | 100 | Plus |
Y | 3667352 | Y | 3023805..3023918 | 485..372 | 240 | 80.7 | Minus |
3R | 32079331 | 3R | 25124888..25125001 | 485..372 | 240 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:22:38 has no hits.
BS04693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:15 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-PA | 580..1473 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:52 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4170-PC | 580..1473 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:52:08 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 725..1625 | 9..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:59:10 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 725..1625 | 9..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:59:10 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15064427..15064948 | 9..531 | 99 | <- | Plus |
2L | 15065190..15065456 | 532..798 | 100 | <- | Plus |
2L | 15066937..15067048 | 799..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:52:08 Download gff for
BS04693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15064427..15064948 | 9..531 | 99 | <- | Plus |
arm_2L | 15065190..15065456 | 532..798 | 100 | <- | Plus |
arm_2L | 15066937..15067048 | 799..910 | 100 | | Plus |
BS04693.5prime Sequence
801 bp (786 high quality bases) assembled on 2005-11-29
> BS04693.5prime
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
A
BS04693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4170-PD | 1473 | vig-RD | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4170-PC | 1473 | vig-RC | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4170-PA | 1473 | vig-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
CG4170-PB | 1473 | vig-RB | 1..785 | 17..801 | 3925 | 100 | Plus |
CG11844-PC | 1239 | CG11844-RC | 433..497 | 668..732 | 200 | 92.3 | Plus |
CG11844-PA | 1239 | CG11844-RA | 433..497 | 668..732 | 200 | 92.3 | Plus |
CG11844-PB | 1332 | CG11844-RB | 526..590 | 668..732 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig-RB | 3164 | CG4170-RB | 188..973 | 16..801 | 3930 | 100 | Plus |
vig-RA | 1918 | CG4170-RA | 225..1010 | 16..801 | 3930 | 100 | Plus |
vig-RC | 1838 | CG4170-RC | 145..930 | 16..801 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15066934..15067628 | 710..16 | 3475 | 100 | Minus |
2L | 23513712 | 2L | 15065363..15065457 | 801..707 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:31:58 has no hits.
BS04693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:16 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:53 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4170-PC | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:32 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 145..929 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:47 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 145..929 | 16..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:47 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15065364..15065456 | 708..800 | 100 | <- | Minus |
2L | 15066937..15067628 | 16..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:32 Download gff for
BS04693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15065364..15065456 | 708..800 | 100 | <- | Minus |
arm_2L | 15066937..15067628 | 16..707 | 100 | | Minus |
BS04693.complete Sequence
1505 bp (1505 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635011
> BS04693.complete
GAAGTTATCAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTT
TGTTCATGGACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCG
ACGGCCGCTGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGC
TGCTGCTGCAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCA
ATAACAAGGCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAA
CCAAATCAGGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAAC
CGATGGCAAGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCA
ATAATAACGCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGA
GGTGGCGCCAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCA
AGGACAAGGTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATG
GCAATGCCGAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAA
AACGTCGGAGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGG
TGGAGGCCCAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACT
ACGATGGCCAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGAT
AGAACTGGTGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAA
CTGGGGATCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCG
AAACCAATGTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGAATCTGGC
ACTGAACCACAAAACGAGCAGGCTACCGCCGAGGAGGAAGCCAAAGAGCT
GACCTTGGACGAGTGGAAGGCACAGCAAGGACAGCGCATCAAGCCAACCT
TTAATATCCGCAAGGCTGGAGAAGGTGAGGACACCACACAATGGAAGAAA
ATGGTCGTCCTAACTAGCAACAAGAAGAAGGAGAACGACAGCGAAGAGGA
GCTCGAGTACGACCCTGCCCTTTATCCACAGCGTGTGGGCAGGCAACAGC
GCGTCCTGGACATTCAGTTCAATTTCAACGATGGTCGTCGTGGCGGACCT
GGCGGTTTCGGTGGACGCGGTGGCCGTGGAGGCCCCAGACCCGGTGGATT
TGGAGGCGGACCACGCAGCGAGGGTGGCAACCGCGATGGCGGCAATCGTG
AGGGCGGCCGAGATAATCGTGAGGGTGGAAACCGTGGCCCACGGGATGGC
CAGCAGCATAATAACGAGGGCGGCGGTTCATCCGCTCAAAATCAAAGGCC
ACCCATCGATCGTCGCGGTCCGGGAAACAACCAGAACAACAATCAGAACA
GCGGTCCAGGGCCGAATAAGCGTTTTGAGCGACAACAGAACACCGCTCCC
AAGGTCAACGATGAGCGTCAGTTTCCCACTCTGGCTTAAAAGCTTTCTAG
ACCAT
BS04693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig-RB | 1473 | CG4170-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
vig-RA | 1473 | CG4170-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
vig-RC | 1473 | CG4170-PC | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig-RB | 3164 | CG4170-RB | 188..1662 | 16..1490 | 7375 | 100 | Plus |
vig-RA | 1918 | CG4170-RA | 225..1699 | 16..1490 | 7375 | 100 | Plus |
vig-RC | 1838 | CG4170-RC | 145..1619 | 16..1490 | 7375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15066934..15067628 | 710..16 | 3475 | 100 | Minus |
2L | 23513712 | 2L | 15064433..15064950 | 1490..973 | 2590 | 100 | Minus |
2L | 23513712 | 2L | 15065187..15065457 | 977..707 | 1355 | 100 | Minus |
Y | 3667352 | Y | 3023805..3023918 | 1021..1134 | 240 | 80.7 | Plus |
3R | 32079331 | 3R | 25124888..25125001 | 1021..1134 | 240 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:58:19 has no hits.
BS04693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:29 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RA | 1..1473 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:37 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RA | 203..1683 | 16..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:26 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 146..1616 | 17..1487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:29 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RA | 203..1683 | 16..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:25 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig-RC | 146..1616 | 17..1487 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:25 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15064436..15064948 | 975..1487 | 100 | <- | Minus |
2L | 15065190..15065456 | 708..974 | 100 | <- | Minus |
2L | 15066937..15067627 | 17..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:26 Download gff for
BS04693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15064436..15064948 | 975..1487 | 100 | <- | Minus |
arm_2L | 15065190..15065456 | 708..974 | 100 | <- | Minus |
arm_2L | 15066937..15067627 | 17..707 | 100 | | Minus |
BS04693.pep Sequence
Translation from 16 to 1488
> BS04693.pep
MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAA
TKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKF
TPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQ
QQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGA
GGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVK
EAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEW
KAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDP
ALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPR
SEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRR
GPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA*
BS04693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig-PB | 490 | CG4170-PB | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PA | 490 | CG4170-PA | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PC | 490 | CG4170-PC | 1..490 | 1..490 | 2614 | 100 | Plus |
vig-PD | 490 | CG4170-PD | 1..490 | 1..490 | 2614 | 100 | Plus |
vig2-PD | 412 | CG11844-PD | 1..411 | 1..489 | 716 | 41.7 | Plus |