Clone Sequence Records
BS04695.3prime Sequence
918 bp (817 high quality bases) assembled on 2005-12-02
> BS04695.3prime
ATGGTCTAGAAAGCTTTCATTTGGCAGACGATATGGCCGCCACACGCTGC
TCCACCTTGGCCACCTTGCTGTTGATAGTCTCCAGATTCTGGGCGAAAGT
CTCCTGTACGGAATGCAGCAGCTCCTTGTTGTTCACCAAGCTAGTGGTGA
TGGTTCCCTGCTTCTGCTCAATCTCTGCGATGATCTTGGCGAAATTGTTT
GCATATTTATGGAGGGCCTCGAGGGCTTGCATGCGTTCGATGACGTGCGG
CAGTATTTCCACCACTGGCTCCGTGCGCTTCGCGATGTCGTATAGTTCCG
TAATCTTCTGATCTCGTTTGGCGTCCTGGGCACTGCCGCTGGACTTTTCG
GCGATAGCATCCATCTTGCCGGCCAGCGAGGTCAGGCGCTGCTCGATGGT
GTCCAGTTTATCAGGCTGTATCAGGGCCGCCTTGGTGCTTAGATGACGCA
CTGCCTCTAGTACATTGGTGGTGTTGGTGGCGGCGGTAAGGCGGCTCAAC
TTGTCCGGCTGAGCGCCCAGCACCTTCTCCAGCTGCGAGATTCGCTGCTC
TAGACTGGCTACGCGGGCCGTGGCCGCCAGATCGGTGCCAGGCGTGGGTA
TGGCTGTGAGAACGCCGGACTGCTTGAACTCCTCCACCTGGCTAATGAGT
GCTTTCACCTGCTTACTTCCAGGCGTCTGCTCCTTGCCCAGCACTTGCTC
CAGCTTCAGCGACTCCAGCACCTTTCGGGCCGTGCTGATAACCGTGGCCA
CCGCATCGTACGACTGCTTCTCCTCGTCGGCTACCTTGCGGTCCACCTGC
AAGGCGGCCACCTCGTTCAGAAGCTCGTTCATCTCGATCTGCAGGCGCTG
GCACTTCTGCACCGGCGTCTCCTTCTCGCCCTGGCCAACCAGCTCGTAGT
CGCTGGAGCCGCGCGTAT
BS04695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8269-PA | 1143 | Dmn-RA | 242..1143 | 918..17 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmn-RA | 1358 | CG8269-RA | 364..1265 | 918..17 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8892279..8892995 | 918..202 | 3585 | 100 | Minus |
2R | 25286936 | 2R | 8893061..8893246 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:06:54 has no hits.
BS04695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:19 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-PA | 242..1143 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:57 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8269-PA | 242..1143 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:07 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 364..1265 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:12 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 364..1265 | 17..918 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:12 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8892279..8892995 | 202..918 | 100 | -> | Minus |
2R | 8893062..8893246 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:07 Download gff for
BS04695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4779784..4780500 | 202..918 | 100 | -> | Minus |
arm_2R | 4780567..4780751 | 17..201 | 100 | | Minus |
BS04695.5prime Sequence
902 bp (824 high quality bases) assembled on 2005-11-29
> BS04695.5prime
GAAGTTATCAGTCGACATGGCCGATCCCAAGTTCCAGAACCTACCGGGAA
TAGCTTATGACCAGCCGGACGTGTACGAAACTCCAGATGACCCGGAGCTC
GATACATCCGACTACTACGAAGAGGAGCCGGAGAACGAAGCCATCGAGCG
ACTGCACATCTCGCCGAGCGTCGCTCACAAGCGCTTCAGCGGAGCAACGG
TCGAGGGGAGTGTGGACTTCACGGATCGCATTGGACGACGCATGTGCCGG
GGTTACGATACGCGCGGCTCCAGCGACTACGAGCTGGTTGGCCAGGGCGA
GAAGGAGACGCCGGTGCAGAAGTGCCAGCGCCTGCAGATCGAGATGAACG
AGCTTCTGAACGAGGTGGCCGCCTTGCAGGTGGACCGCAAGGTAGCCGAC
GAGGAGAAGCAGTCGTACGATGCGGTGGCCACGGTTATCAGCACGGCCCG
AAAGGTGCTGGAGTCGCTGAAGCTGGAGCAAGTGCTGGGCAAGGAGCAGA
CGCCTGGAAGTAAGCAGGTGAAAGCACTCATTAGCCAGGTGGAGGAGTTC
AAGCAGTCCGGCGTTCTCACAGCCATACCCACGCCTGGCACCGATCTGGC
GGCCACGGCCCGCGTAGCCAGTCTAGAGCAGCGAATCTCGCAGCTGGAGA
AGGTGCTGGGCGCTCAGCCGGACAAGTTGAGCCGCCTTACCGCCGCCACC
AACACCACCAATGTACTAGAGGCAGTGCGTCATCTAAGCACCAAGGCGGC
CCTGATACAGCCTGATAAACTGGACACCATCGAGCAGCGCCTGACCTCGC
TGGCCGGCAAGATGGATGCTATCGCCGAAAAGTCCAGCGGCAGTGCCCAG
GACGCCAAACGAGATCAGAAGATTACGGAACTATACGACATCGCGAAGCG
CA
BS04695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8269-PA | 1143 | Dmn-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmn-RA | 1358 | CG8269-RA | 123..1008 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8892074..8892923 | 53..902 | 4250 | 100 | Plus |
2R | 25286936 | 2R | 8891954..8891990 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:49:23 has no hits.
BS04695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:20 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:18:59 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8269-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:44 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 118..1007 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:25 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 118..1007 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:25 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8892074..8892922 | 53..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:44 Download gff for
BS04695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4779579..4780427 | 53..901 | 100 | | Plus |
BS04695.complete Sequence
1175 bp (1175 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635012
> BS04695.complete
GAAGTTATCAGTCGACATGGCCGATCCCAAGTTCCAGAACCTACCGGGAA
TAGCTTATGACCAGCCGGACGTGTACGAAACTCCAGATGACCCGGAGCTC
GATACATCCGACTACTACGAAGAGGAGCCGGAGAACGAAGCCATCGAGCG
ACTGCACATCTCGCCGAGCGTCGCTCACAAGCGCTTCAGCGGAGCAACGG
TCGAGGGGAGTGTGGACTTCACGGATCGCATTGGACGACGCATGTGCCGG
GGTTACGATACGCGCGGCTCCAGCGACTACGAGCTGGTTGGCCAGGGCGA
GAAGGAGACGCCGGTGCAGAAGTGCCAGCGCCTGCAGATCGAGATGAACG
AGCTTCTGAACGAGGTGGCCGCCTTGCAGGTGGACCGCAAGGTAGCCGAC
GAGGAGAAGCAGTCGTACGATGCGGTGGCCACGGTTATCAGCACGGCCCG
AAAGGTGCTGGAGTCGCTGAAGCTGGAGCAAGTGCTGGGCAAGGAGCAGA
CGCCTGGAAGTAAGCAGGTGAAAGCACTCATTAGCCAGGTGGAGGAGTTC
AAGCAGTCCGGCGTTCTCACAGCCATACCCACGCCTGGCACCGATCTGGC
GGCCACGGCCCGCGTAGCCAGTCTAGAGCAGCGAATCTCGCAGCTGGAGA
AGGTGCTGGGCGCTCAGCCGGACAAGTTGAGCCGCCTTACCGCCGCCACC
AACACCACCAATGTACTAGAGGCAGTGCGTCATCTAAGCACCAAGGCGGC
CCTGATACAGCCTGATAAACTGGACACCATCGAGCAGCGCCTGACCTCGC
TGGCCGGCAAGATGGATGCTATCGCCGAAAAGTCCAGCGGCAGTGCCCAG
GACGCCAAACGAGATCAGAAGATTACGGAACTATACGACATCGCGAAGCG
CACGGAGCCAGTGGTGGAAATACTGCCGCACGTCATCGAACGCATGCAAG
CCCTCGAGGCCCTCCATAAATATGCAAACAATTTCGCCAAGATCATCGCA
GAGATTGAGCAGAAGCAGGGAACCATCACCACTAGCTTGGTGAACAACAA
GGAGCTGCTGCATTCCGTACAGGAGACTTTCGCCCAGAATCTGGAGACTA
TCAACAGCAAGGTGGCCAAGGTGGAGCAGCGTGTGGCGGCCATATCGTCT
GCCAAATGAAAGCTTTCTAGACCAT
BS04695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmn-RA | 1143 | CG8269-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmn-RA | 1358 | CG8269-RA | 123..1265 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8892074..8892995 | 53..974 | 4610 | 100 | Plus |
2R | 25286936 | 2R | 8893061..8893246 | 974..1159 | 930 | 100 | Plus |
2R | 25286936 | 2R | 8891954..8891990 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:03 has no hits.
BS04695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:21 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 1..1143 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:27 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 110..1257 | 9..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:47:08 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 123..1264 | 17..1158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:21 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 110..1257 | 9..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:29 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dmn-RA | 123..1264 | 17..1158 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:29 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8891954..8891989 | 17..52 | 100 | -> | Plus |
2R | 8892074..8892995 | 53..974 | 100 | -> | Plus |
2R | 8893062..8893245 | 975..1158 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:47:08 Download gff for
BS04695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4779459..4779494 | 17..52 | 100 | -> | Plus |
arm_2R | 4779579..4780500 | 53..974 | 100 | -> | Plus |
arm_2R | 4780567..4780750 | 975..1158 | 100 | | Plus |
BS04695.pep Sequence
Translation from 16 to 1158
> BS04695.pep
MADPKFQNLPGIAYDQPDVYETPDDPELDTSDYYEEEPENEAIERLHISP
SVAHKRFSGATVEGSVDFTDRIGRRMCRGYDTRGSSDYELVGQGEKETPV
QKCQRLQIEMNELLNEVAALQVDRKVADEEKQSYDAVATVISTARKVLES
LKLEQVLGKEQTPGSKQVKALISQVEEFKQSGVLTAIPTPGTDLAATARV
ASLEQRISQLEKVLGAQPDKLSRLTAATNTTNVLEAVRHLSTKAALIQPD
KLDTIEQRLTSLAGKMDAIAEKSSGSAQDAKRDQKITELYDIAKRTEPVV
EILPHVIERMQALEALHKYANNFAKIIAEIEQKQGTITTSLVNNKELLHS
VQETFAQNLETINSKVAKVEQRVAAISSAK*
BS04695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmn-PA | 380 | CG8269-PA | 1..380 | 1..380 | 1881 | 100 | Plus |