Clone Sequence Records
BS04696.3prime Sequence
891 bp (805 high quality bases) assembled on 2005-12-02
> BS04696.3prime
ATGGTCTAGAAAGCTTTCAATTTCTTCGCAATCCAAAGGTGGGCAACTGA
TGGGCACAACAGCAGGCCACCACGTACAAGATGCCAAAAAAGAAGTTCAG
CTTGGCTGTTTGCCGAGGCACCAGATGCATCGTCTGTTCGTTGCGGAAAC
GTTTCTCAATCTGGAACGCTTGCGGCAGGGTTACCAGCGGCAGCAGGAAC
CACAGAGAGTACTTCAAACCGAAGATGAAGAACAATGAGTAGGGTGCAAA
GAGCAGCATGGCATACAGAACGTGCGATGCTGTACGGCCTATCAAAATGG
CGAGCGTTACGATTCCAGCCCGGCGATCGTTGTCCGCATCCCTTGTGTTG
TTGCTGTGCAGGATGGCCTCCGTGTTGAGAGCCAAAGGAATCGCATAGCC
CATTGTCGTCCAGTCCAAATGACCTGTTTGCGACATGAAGGCGAATAGCA
CCGAGATGGGTCCAAAGAGTATCAGTATAACCAGATCTCCCAGGGCGATG
TACTTGAAACCAATGCCTCCGGTGTACAGGAAGCTCGAGGACAATCCCCC
GAAGTAGATCAGTGCCAGGTGCTCCATTTTCGCCGGACTGAGCACAGCCA
GCAAAACAAATCCTCCACAGCCAGCCATGTACAGAATGGCACCCAGCGAT
ACCACCTCATCCTTGGTGAGTATGTGATCCACCAGCGTGCGGTCGTCGGC
TTTCTGCTTGTCAATGCCCTTGATGAAGTCGAAATAGGTGTTAACTACGT
TGCCGGCGCAGTGGACGGTGACCACGGTGAAGGCGGTGAGAAAGAAGGTG
GCCAGCGAAAACTCCTCCGCCCACTGGGAGCGGTAGGCCAGGGCTGAGCC
GAGCAGCGTTGGAACCAGACTGGCGGACAGCGACCAGGGAC
BS04696.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5876-PA | 1080 | heix-RA | 206..1080 | 891..17 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 752..1626 | 891..17 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16297555..16298195 | 17..657 | 3205 | 100 | Plus |
2L | 23513712 | 2L | 16298869..16299107 | 653..891 | 1195 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 09:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 743..793 | 111 | 68.6 | Plus |
BS04696.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:21 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-PA | 206..1080 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:00 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5876-PA | 206..1080 | 17..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:27 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 752..1629 | 14..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:16 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 752..1629 | 14..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:16 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297552..16298193 | 14..655 | 99 | <- | Plus |
2L | 16298872..16299107 | 656..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:27 Download gff for
BS04696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297552..16298193 | 14..655 | 99 | <- | Plus |
arm_2L | 16298872..16299107 | 656..891 | 100 | | Plus |
BS04696.5prime Sequence
875 bp (873 high quality bases) assembled on 2005-11-29
> BS04696.5prime
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCANACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACT
BS04696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5876-PA | 1080 | heix-RA | 1..859 | 17..875 | 4276 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 546..1405 | 16..875 | 4289 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16298869..16299313 | 460..16 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 16297776..16298195 | 875..456 | 2089 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-10 23:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 370..320 | 111 | 68.6 | Minus |
BS04696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:22 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:01 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5876-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:15 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 546..1405 | 16..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:13 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 546..1405 | 16..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:13 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297776..16298193 | 458..875 | 99 | <- | Minus |
2L | 16298872..16299313 | 16..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:15 Download gff for
BS04696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297776..16298193 | 458..875 | 99 | <- | Minus |
arm_2L | 16298872..16299313 | 16..457 | 100 | | Minus |
BS04696.complete Sequence
1112 bp (1112 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635013
> BS04696.complete
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAA
GTACTCTCTGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAAGCGTTCC
AGATTGAGAAACGTTTCCGCAACGAACAGACGATGCATCTGGTGCCTCGG
CAAACAGCCAAGCTGAACTTCTTTTTTGGCATCTTGTACGTGGTGGCCTG
CTGTTGTGCCCATCAGTTGCCCACCTTTGGATTGCGAAGAAATTGAAAGC
TTTCTAGACCAT
BS04696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 1080 | CG5876-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-RA | 3130 | CG5876-RA | 546..1626 | 16..1096 | 5405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16297555..16298195 | 1096..456 | 3205 | 100 | Minus |
2L | 23513712 | 2L | 16298869..16299313 | 460..16 | 2225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 370..320 | 111 | 68.6 | Minus |
BS04696.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:22 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:28 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 563..1646 | 16..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:29 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 547..1625 | 17..1095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:22 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 563..1646 | 16..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:33 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
heix-RA | 547..1625 | 17..1095 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:33 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16297556..16298193 | 458..1095 | 100 | <- | Minus |
2L | 16298872..16299312 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:29 Download gff for
BS04696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16297556..16298193 | 458..1095 | 100 | <- | Minus |
arm_2L | 16298872..16299312 | 17..457 | 100 | | Minus |
BS04696.pep Sequence
Translation from 16 to 1095
> BS04696.pep
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRN*
BS04696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
heix-PA | 359 | CG5876-PA | 1..359 | 1..359 | 1841 | 100 | Plus |