Clone BS04696 Report

Search the DGRC for BS04696

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:46
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptheix-RA
Protein status:BS04696.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04696.3prime Sequence

891 bp (805 high quality bases) assembled on 2005-12-02

> BS04696.3prime
ATGGTCTAGAAAGCTTTCAATTTCTTCGCAATCCAAAGGTGGGCAACTGA
TGGGCACAACAGCAGGCCACCACGTACAAGATGCCAAAAAAGAAGTTCAG
CTTGGCTGTTTGCCGAGGCACCAGATGCATCGTCTGTTCGTTGCGGAAAC
GTTTCTCAATCTGGAACGCTTGCGGCAGGGTTACCAGCGGCAGCAGGAAC
CACAGAGAGTACTTCAAACCGAAGATGAAGAACAATGAGTAGGGTGCAAA
GAGCAGCATGGCATACAGAACGTGCGATGCTGTACGGCCTATCAAAATGG
CGAGCGTTACGATTCCAGCCCGGCGATCGTTGTCCGCATCCCTTGTGTTG
TTGCTGTGCAGGATGGCCTCCGTGTTGAGAGCCAAAGGAATCGCATAGCC
CATTGTCGTCCAGTCCAAATGACCTGTTTGCGACATGAAGGCGAATAGCA
CCGAGATGGGTCCAAAGAGTATCAGTATAACCAGATCTCCCAGGGCGATG
TACTTGAAACCAATGCCTCCGGTGTACAGGAAGCTCGAGGACAATCCCCC
GAAGTAGATCAGTGCCAGGTGCTCCATTTTCGCCGGACTGAGCACAGCCA
GCAAAACAAATCCTCCACAGCCAGCCATGTACAGAATGGCACCCAGCGAT
ACCACCTCATCCTTGGTGAGTATGTGATCCACCAGCGTGCGGTCGTCGGC
TTTCTGCTTGTCAATGCCCTTGATGAAGTCGAAATAGGTGTTAACTACGT
TGCCGGCGCAGTGGACGGTGACCACGGTGAAGGCGGTGAGAAAGAAGGTG
GCCAGCGAAAACTCCTCCGCCCACTGGGAGCGGTAGGCCAGGGCTGAGCC
GAGCAGCGTTGGAACCAGACTGGCGGACAGCGACCAGGGAC

BS04696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5876-PA 1080 heix-RA 206..1080 891..17 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 752..1626 891..17 4375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16297555..16298195 17..657 3205 100 Plus
2L 23513712 2L 16298869..16299107 653..891 1195 100 Plus
Blast to na_te.dros performed 2015-02-01 09:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 743..793 111 68.6 Plus

BS04696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:21 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-PA 206..1080 17..891 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:00 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5876-PA 206..1080 17..891 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:27 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 752..1629 14..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:16 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 752..1629 14..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:16 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16297552..16298193 14..655 99 <- Plus
2L 16298872..16299107 656..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:27 Download gff for BS04696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297552..16298193 14..655 99 <- Plus
arm_2L 16298872..16299107 656..891 100   Plus

BS04696.5prime Sequence

875 bp (873 high quality bases) assembled on 2005-11-29

> BS04696.5prime
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCANACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACT

BS04696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5876-PA 1080 heix-RA 1..859 17..875 4276 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 546..1405 16..875 4289 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16298869..16299313 460..16 2225 100 Minus
2L 23513712 2L 16297776..16298195 875..456 2089 99.8 Minus
Blast to na_te.dros performed 2015-02-10 23:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 370..320 111 68.6 Minus

BS04696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:22 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:01 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5876-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:15 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 546..1405 16..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:13 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
heix-RA 546..1405 16..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:13 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16297776..16298193 458..875 99 <- Minus
2L 16298872..16299313 16..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:15 Download gff for BS04696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297776..16298193 458..875 99 <- Minus
arm_2L 16298872..16299313 16..457 100   Minus

BS04696.complete Sequence

1112 bp (1112 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635013

> BS04696.complete
GAAGTTATCAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCA
ACTTGTCCAGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAA
GCCGTTGTTGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAAC
GGGACGACTAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGA
AAACCTATCTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTT
CCAACGCTGCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGA
GTTTTCGCTGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCC
ACTGCGCCGGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATT
GACAAGCAGAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAA
GGATGAGGTGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAG
GATTTGTTTTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCA
CTGATCTACTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCAT
TGGTTTCAAGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTG
GACCCATCTCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGAC
TGGACGACAATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCAT
CCTGCACAGCAACAACACAAGGGATGCGGACAACGATCGCCGGGCTGGAA
TCGTAACGCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTAT
GCCATGCTGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAA
GTACTCTCTGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAAGCGTTCC
AGATTGAGAAACGTTTCCGCAACGAACAGACGATGCATCTGGTGCCTCGG
CAAACAGCCAAGCTGAACTTCTTTTTTGGCATCTTGTACGTGGTGGCCTG
CTGTTGTGCCCATCAGTTGCCCACCTTTGGATTGCGAAGAAATTGAAAGC
TTTCTAGACCAT

BS04696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 1080 CG5876-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
heix-RA 3130 CG5876-RA 546..1626 16..1096 5405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16297555..16298195 1096..456 3205 100 Minus
2L 23513712 2L 16298869..16299313 460..16 2225 100 Minus
Blast to na_te.dros performed 2014-11-27 01:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
invader2 5124 invader2 INVADER2 5124bp 717..767 370..320 111 68.6 Minus

BS04696.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:22 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 1..1080 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:28 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 563..1646 16..1099 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:29 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 547..1625 17..1095 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:22 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 563..1646 16..1099 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:33 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
heix-RA 547..1625 17..1095 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:33 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16297556..16298193 458..1095 100 <- Minus
2L 16298872..16299312 17..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:29 Download gff for BS04696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16297556..16298193 458..1095 100 <- Minus
arm_2L 16298872..16299312 17..457 100   Minus

BS04696.pep Sequence

Translation from 16 to 1095

> BS04696.pep
MATSSQLLPNGNLSRNGKTKTEDGEEVEAVVGARAAGADAGVALTGRLTG
HPSTSGTFMKLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAEEFSLAT
FFLTAFTVVTVHCAGNVVNTYFDFIKGIDKQKADDRTLVDHILTKDEVVS
LGAILYMAGCGGFVLLAVLSPAKMEHLALIYFGGLSSSFLYTGGIGFKYI
ALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIPLALNTEAILHSNN
TRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYSLWF
LLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCAHQ
LPTFGLRRN*

BS04696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
heix-PA 359 CG5876-PA 1..359 1..359 1841 100 Plus