Clone BS04703 Report

Search the DGRC for BS04703

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG11306-RA
Protein status:BS04703.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04703.3prime Sequence

891 bp (866 high quality bases) assembled on 2005-12-02

> BS04703.3prime
ATGGTCTAGAAAGCTTTTAATTGTTGGTAAATAGCGTTGAAACAGCTCGA
AGAAAGTTTTTTTCAAACTCTTGCTCAGAAAACCGTTCCACGGAGGCCCT
GGCTGCGTTTCGAATGCCGTTCATTTCTGAGTTGTTAACAATAATATTTA
ATATGTTTTCTGCGTATTCAACGGCGTCAGTAGCCAGGAATCCGTTCTGA
CTTCCCGCGGAAGTTTCGACAATGTCAAGCAAAGGACCCCCTGACTTGTG
GGCCACCATTATAAGGCCAGCAGCCATGGACTCGACGATGCCGATGCCAA
AATGTTCGTTCCACATAGTGTGAATGCCAATGTGGGCAGTTTGATACAAC
TTAAGAAGGTCTTCGTAAGGGACATTCACACTAAATTGCACATTGTTTTC
TAGCGACAGATGCTTTGTCAGGTCCTGCATGTTTTTCAACCGCTCGTAGT
CATCTTCATTTCGGCAGGAGCCCACAATAACCAACTTAATTTGGTTCCAA
AGGGCCTCGTCTTGGGCCAAGAGAGTTCGGAGCTCGTATATGGCTTGCAG
CTGGAGGGGATGGTCTTTCTCCGGGCGGAACTGTCCGACAGACAGTATGA
TGAATTCGTCGCCTTTTTCCGTGTGCTGAAGGCTCTTTAGGTGACTAACC
TCGCACGGAGGGTAAACCCGGTGTGTTTTGAAGGGCACATCCCACAGTTG
CAGAATATGATTCTCGGTCCACGAGGAGTTCACCATGATAGTCTCAGCAC
AACAGCCAACCCACTTGTACATTCTTGAGAAGAGGCGGTAGTAGGCAAGC
TTAGTCCAGGTGAGAAAGGGGTTCCTCGCCACGTACTTCTTGTTGTTGTG
CGACATCTGTCGCTGCTGAACCCTCTTCAGCATATCGGTGC

BS04703.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-PA 1428 CG11306-RA 554..1428 891..17 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-RB 1994 CG11306-RB 823..1699 891..15 4385 100 Minus
CG11306-RA 1563 CG11306-RA 647..1523 891..15 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21627462..21628136 772..98 3375 100 Minus
3L 28110227 3L 21627282..21627400 891..773 595 100 Minus
3L 28110227 3L 21628191..21628276 100..15 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:10:02 has no hits.

BS04703.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:27 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-PA 554..1428 17..891 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:08 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-PA 554..1428 17..891 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:33 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 647..1523 15..891 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:04 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 647..1523 15..891 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:04 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21627282..21627400 773..891 100 -> Minus
3L 21627462..21628135 99..772 100 -> Minus
3L 21628193..21628276 15..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:33 Download gff for BS04703.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21620382..21620500 773..891 100 -> Minus
arm_3L 21620562..21621235 99..772 100 -> Minus
arm_3L 21621293..21621376 15..98 100   Minus

BS04703.5prime Sequence

831 bp (588 high quality bases) assembled on 2005-11-29

> BS04703.5prime
GAAGTTATCAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGT
TATCGCTTGTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGG
TTGCTTGGCCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAA
CGTGGGCATTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCG
TCTTGTGGTGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGG
ATGGTAATCTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCA
AAAGGCCAAGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGT
TCGTCTTCCTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCAT
TTCACTCTGCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGC
ACTCTGCAGGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCT
TTACGTATCCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTAT
GTTCACTATCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCG
ACAGATGTCGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCA
CCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGG
GTTGGCTGTTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAA
TCATATTCTGCAACTGTGGGATGTGCCCTTCAAAACACACCGGGTTTACC
CTCCGTGCGAGGTTAGTCACCTAAAGAGCCT

BS04703.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-PA 1428 CG11306-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-RB 1994 CG11306-RB 270..1084 17..831 4075 100 Plus
CG11306-RA 1563 CG11306-RA 94..908 17..831 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21626940..21627400 228..688 2305 100 Plus
3L 28110227 3L 21626432..21626625 37..230 970 100 Plus
3L 28110227 3L 21627462..21627604 689..831 715 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:00:10 has no hits.

BS04703.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:28 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:09 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-PA 1..815 17..831 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:39:27 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 85..908 9..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:08 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 85..908 9..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:08 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21626432..21626624 37..229 100 -> Plus
3L 21626942..21627400 230..688 100 -> Plus
3L 21627462..21627604 689..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:39:27 Download gff for BS04703.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21619532..21619724 37..229 100 -> Plus
arm_3L 21620042..21620500 230..688 100 -> Plus
arm_3L 21620562..21620704 689..831 100   Plus

BS04703.complete Sequence

1460 bp (1460 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635014

> BS04703.complete
GAAGTTATCAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGT
TATCGCTTGTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGG
TTGCTTGGCCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAA
CGTGGGCATTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCG
TCTTGTGGTGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGG
ATGGTAATCTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCA
AAAGGCCAAGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGT
TCGTCTTCCTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCAT
TTCACTCTGCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGC
ACTCTGCAGGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCT
TTACGTATCCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTAT
GTTCACTATCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCG
ACAGATGTCGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCA
CCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGG
GTTGGCTGTTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAA
TCATATTCTGCAACTGTGGGATGTGCCCTTCAAAACACACCGGGTTTACC
CTCCGTGCGAGGTTAGTCACCTAAAGAGCCTTCAGCACACGGAAAAAGGC
GACGAATTCATCATACTGTCTGTCGGACAGTTCCGCCCGGAGAAAGACCA
TCCCCTCCAGCTGCAAGCCATATACGAGCTCCGAACTCTCTTGGCCCAAG
ACGAGGCCCTTTGGAACCAAATTAAGTTGGTTATTGTGGGCTCCTGCCGA
AATGAAGATGACTACGAGCGGTTGAAAAACATGCAGGACCTGACAAAGCA
TCTGTCGCTAGAAAACAATGTGCAATTTAGTGTGAATGTCCCTTACGAAG
ACCTTCTTAAGTTGTATCAAACTGCCCACATTGGCATTCACACTATGTGG
AACGAACATTTTGGCATCGGCATCGTCGAGTCCATGGCTGCTGGCCTTAT
AATGGTGGCCCACAAGTCAGGGGGTCCTTTGCTTGACATTGTCGAAACTT
CCGCGGGAAGTCAGAACGGATTCCTGGCTACTGACGCCGTTGAATACGCA
GAAAACATATTAAATATTATTGTTAACAACTCAGAAATGAACGGCATTCG
AAACGCAGCCAGGGCCTCCGTGGAACGGTTTTCTGAGCAAGAGTTTGAAA
AAAACTTTCTTCGAGCTGTTTCAACGCTATTTACCAACAATTAAAAGCTT
TCTAGACCAT

BS04703.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-RB 1428 CG11306-PB 1..1428 17..1444 7140 100 Plus
CG11306-RA 1428 CG11306-PA 1..1428 17..1444 7140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-RB 1994 CG11306-RB 270..1699 17..1446 7150 100 Plus
CG11306-RA 1563 CG11306-RA 94..1523 17..1446 7150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21627462..21628136 689..1363 3375 100 Plus
3L 28110227 3L 21626940..21627400 228..688 2305 100 Plus
3L 28110227 3L 21626432..21626625 37..230 970 100 Plus
3L 28110227 3L 21628191..21628276 1361..1446 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:42 has no hits.

BS04703.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:23 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 1..1428 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:30 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 72..1510 9..1446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:23 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 100..1519 23..1442 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:24 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 72..1510 9..1446 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:56 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
CG11306-RA 100..1519 23..1442 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:56 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21626432..21626624 37..229 100 -> Plus
3L 21626942..21627400 230..688 100 -> Plus
3L 21627462..21628135 689..1362 100 -> Plus
3L 21628193..21628272 1363..1442 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:23 Download gff for BS04703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21619532..21619724 37..229 100 -> Plus
arm_3L 21620042..21620500 230..688 100 -> Plus
arm_3L 21620562..21621235 689..1362 100 -> Plus
arm_3L 21621293..21621372 1363..1442 100   Plus

BS04703.pep Sequence

Translation from 16 to 1443

> BS04703.pep
MFLFLFLLWLLLSLVLVAVLSFLFLRQWLLGRKNKLHTSSENGINVGIFH
PYCNAGGGGERVLWCAVRALQEKYQNARMVIYTGDIDASPNSILQKAKNV
FNIAVDSDNVKFVFLKQRHWIEAKNYPHFTLLGQSIGSMVVGLEALCRFP
PDIYIDTMGYAFTYPLFRYLAQSKVGCYVHYPVISTDMLKRVQQRQMSHN
NKKYVARNPFLTWTKLAYYRLFSRMYKWVGCCAETIMVNSSWTENHILQL
WDVPFKTHRVYPPCEVSHLKSLQHTEKGDEFIILSVGQFRPEKDHPLQLQ
AIYELRTLLAQDEALWNQIKLVIVGSCRNEDDYERLKNMQDLTKHLSLEN
NVQFSVNVPYEDLLKLYQTAHIGIHTMWNEHFGIGIVESMAAGLIMVAHK
SGGPLLDIVETSAGSQNGFLATDAVEYAENILNIIVNNSEMNGIRNAARA
SVERFSEQEFEKNFLRAVSTLFTNN*

BS04703.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11306-PB 475 CG11306-PB 1..475 1..475 2507 100 Plus
CG11306-PA 475 CG11306-PA 1..475 1..475 2507 100 Plus
CG1291-PA 424 CG1291-PA 223..356 281..414 155 30.9 Plus