Clone BS04707 Report

Search the DGRC for BS04707

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG31324-RA
Protein status:BS04707.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04707.3prime Sequence

825 bp (799 high quality bases) assembled on 2005-12-02

> BS04707.3prime
ATGGTCTAGAAAGCTTTTAGTGGCGCAGCAGCATGTTGCTGACCTTGGCC
TCTGCCTTTGGCGACATTTTGTCACGGAATTGGCGATTTTCCGGGTTGGC
CAGCACCGAGGCAATGAACTCCGAGGTCTCCAGCTGCAGTTGGGCCAATC
GCTTTTGCAGCAGCTTGTTGCGCTGCACCAGCTTGATAGTCTTGATGGCA
ATGGACAACAGGCCTTCGCTATTCTGGTGGTACATGTGCTGCTCCTTTAT
GGGATCCTGGCTGTACTCGTACCCACTGTCGCCATCGTGGTCGTCCTCTA
TCTGGAGCGGCACCTCTCGATCACAGTTTTTGGCCCTGGCCGATCGGTTC
TGCTTGCTACTATATCCGCTAGCCGTCGTCGGCTGTAATACTGTCTTGAT
GTTGTCGCTGCTGGAATGTGGCTGTTGCTGCAGTCCCTGGATCCTGGCAT
CCGAGTAGCGGTCGTCGTCCAGCTGCATCCTCTGCTCGGAGTCCATCTCC
ACCTCCGTTTCCACGCCGCTGCTCGTGTCCGTGGAGAAGGAGGACACGCG
GGCAAGGATGTGAGGCATCCTGCGCTGTAATCGCGCCGGTCGACGGCGGC
TCATCGAGTTCATCGAACCTTTGGCCACATGGTTGAGCACCGAACTAGCT
TGTGTGGCGGCAGCTGCAGATGTGGATCCCACGGACAAGGACGAGGACGA
TGATGCGGTGGATGCGGTTGCGGATGCTGATGAAATGGCGGCTGTGGCCA
CGCCATGATGTCGCCGCGTTTCGCGCAGCTGCTTTTTCTCCGAGCATATG
GTGGGCGCCATGTCGACTGATAACT

BS04707.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PA 795 CG31324-RA 1..795 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2797 811..16 3980 100 Minus
CG31324-RA 1885 CG31324-RA 515..1310 811..16 3980 100 Minus
CG31324-RC 1256 CG31324-RC 70..681 627..16 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129615 628..16 3065 100 Minus
3R 32079331 3R 26124474..26124657 811..628 920 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:10:16 has no hits.

BS04707.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:36 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:19 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:35 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 11..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:29 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 11..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:29 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26124469..26124657 628..818 97 -> Minus
3R 26129004..26129617 11..627 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:35 Download gff for BS04707.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950191..21950379 628..818 97 -> Minus
arm_3R 21954726..21955339 11..627 99   Minus

BS04707.5prime Sequence

825 bp (769 high quality bases) assembled on 2005-11-29

> BS04707.5prime
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACTAAAAGCTTTCTAGACC

BS04707.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PA 795 CG31324-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2797 17..812 3980 100 Plus
CG31324-RA 1885 CG31324-RA 515..1310 17..812 3980 100 Plus
CG31324-RC 1256 CG31324-RC 70..681 201..812 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129615 200..812 3065 100 Plus
3R 32079331 3R 26124474..26124657 17..200 920 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:27:27 has no hits.

BS04707.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:37 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:21 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:41 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 10..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:07 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 510..1312 10..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:07 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26124469..26124657 10..200 97 -> Plus
3R 26129004..26129617 201..817 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:41 Download gff for BS04707.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950191..21950379 10..200 97 -> Plus
arm_3R 21954726..21955339 201..817 99   Plus

BS04707.complete Sequence

827 bp (827 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635015

> BS04707.complete
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACTAAAAGCTTTCTAGACCAT

BS04707.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 795 CG31324-PB 1..795 17..811 3975 100 Plus
CG31324-RA 795 CG31324-PA 1..795 17..811 3975 100 Plus
CG31324-RC 612 CG31324-PC 2..612 201..811 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-RB 3856 CG31324-RB 2002..2797 17..812 3980 100 Plus
CG31324-RA 1885 CG31324-RA 515..1310 17..812 3980 100 Plus
CG31324-RC 1256 CG31324-RC 70..681 201..812 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26129003..26129615 200..812 3065 100 Plus
3R 32079331 3R 26124474..26124657 17..200 920 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:41 has no hits.

BS04707.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:15 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:17 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 512..1314 10..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:54 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 515..1307 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:16 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 512..1314 10..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:17 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
CG31324-RA 515..1307 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:17 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26124474..26124657 17..200 100 -> Plus
3R 26129004..26129612 201..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:54 Download gff for BS04707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21950196..21950379 17..200 100 -> Plus
arm_3R 21954726..21955334 201..809 100   Plus

BS04707.pep Sequence

Translation from 16 to 810

> BS04707.pep
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRH*

BS04707.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31324-PB 264 CG31324-PB 1..264 1..264 1310 100 Plus
CG31324-PA 264 CG31324-PA 1..264 1..264 1310 100 Plus
CG31324-PC 203 CG31324-PC 1..203 62..264 1020 99.5 Plus