Clone Sequence Records
BS04707.3prime Sequence
825 bp (799 high quality bases) assembled on 2005-12-02
> BS04707.3prime
ATGGTCTAGAAAGCTTTTAGTGGCGCAGCAGCATGTTGCTGACCTTGGCC
TCTGCCTTTGGCGACATTTTGTCACGGAATTGGCGATTTTCCGGGTTGGC
CAGCACCGAGGCAATGAACTCCGAGGTCTCCAGCTGCAGTTGGGCCAATC
GCTTTTGCAGCAGCTTGTTGCGCTGCACCAGCTTGATAGTCTTGATGGCA
ATGGACAACAGGCCTTCGCTATTCTGGTGGTACATGTGCTGCTCCTTTAT
GGGATCCTGGCTGTACTCGTACCCACTGTCGCCATCGTGGTCGTCCTCTA
TCTGGAGCGGCACCTCTCGATCACAGTTTTTGGCCCTGGCCGATCGGTTC
TGCTTGCTACTATATCCGCTAGCCGTCGTCGGCTGTAATACTGTCTTGAT
GTTGTCGCTGCTGGAATGTGGCTGTTGCTGCAGTCCCTGGATCCTGGCAT
CCGAGTAGCGGTCGTCGTCCAGCTGCATCCTCTGCTCGGAGTCCATCTCC
ACCTCCGTTTCCACGCCGCTGCTCGTGTCCGTGGAGAAGGAGGACACGCG
GGCAAGGATGTGAGGCATCCTGCGCTGTAATCGCGCCGGTCGACGGCGGC
TCATCGAGTTCATCGAACCTTTGGCCACATGGTTGAGCACCGAACTAGCT
TGTGTGGCGGCAGCTGCAGATGTGGATCCCACGGACAAGGACGAGGACGA
TGATGCGGTGGATGCGGTTGCGGATGCTGATGAAATGGCGGCTGTGGCCA
CGCCATGATGTCGCCGCGTTTCGCGCAGCTGCTTTTTCTCCGAGCATATG
GTGGGCGCCATGTCGACTGATAACT
BS04707.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PA | 795 | CG31324-RA | 1..795 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2797 | 811..16 | 3980 | 100 | Minus |
CG31324-RA | 1885 | CG31324-RA | 515..1310 | 811..16 | 3980 | 100 | Minus |
CG31324-RC | 1256 | CG31324-RC | 70..681 | 627..16 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129615 | 628..16 | 3065 | 100 | Minus |
3R | 32079331 | 3R | 26124474..26124657 | 811..628 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:10:16 has no hits.
BS04707.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:36 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:19 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:44:35 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 11..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:29 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 11..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:29 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124469..26124657 | 628..818 | 97 | -> | Minus |
3R | 26129004..26129617 | 11..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:44:35 Download gff for
BS04707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950191..21950379 | 628..818 | 97 | -> | Minus |
arm_3R | 21954726..21955339 | 11..627 | 99 | | Minus |
BS04707.5prime Sequence
825 bp (769 high quality bases) assembled on 2005-11-29
> BS04707.5prime
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACTAAAAGCTTTCTAGACC
BS04707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PA | 795 | CG31324-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2797 | 17..812 | 3980 | 100 | Plus |
CG31324-RA | 1885 | CG31324-RA | 515..1310 | 17..812 | 3980 | 100 | Plus |
CG31324-RC | 1256 | CG31324-RC | 70..681 | 201..812 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129615 | 200..812 | 3065 | 100 | Plus |
3R | 32079331 | 3R | 26124474..26124657 | 17..200 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:27:27 has no hits.
BS04707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:37 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:21 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:41 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 10..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:07 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 510..1312 | 10..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:07 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124469..26124657 | 10..200 | 97 | -> | Plus |
3R | 26129004..26129617 | 201..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:41 Download gff for
BS04707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950191..21950379 | 10..200 | 97 | -> | Plus |
arm_3R | 21954726..21955339 | 201..817 | 99 | | Plus |
BS04707.complete Sequence
827 bp (827 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635015
> BS04707.complete
GAAGTTATCAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGC
TGCGCGAAACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCA
GCATCCGCAACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGG
ATCCACATCTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATG
TGGCCAAAGGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTA
CAGCGCAGGATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGA
CACGAGCAGCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGA
TGCAGCTGGACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAG
CAACAGCCACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGAC
GACGGCTAGCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAA
ACTGTGATCGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGAC
AGTGGGTACGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCA
CCAGAATAGCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGG
TGCAGCGCAACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAG
ACCTCGGAGTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATT
CCGTGACAAAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGC
TGCGCCACTAAAAGCTTTCTAGACCAT
BS04707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 795 | CG31324-PB | 1..795 | 17..811 | 3975 | 100 | Plus |
CG31324-RA | 795 | CG31324-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG31324-RC | 612 | CG31324-PC | 2..612 | 201..811 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-RB | 3856 | CG31324-RB | 2002..2797 | 17..812 | 3980 | 100 | Plus |
CG31324-RA | 1885 | CG31324-RA | 515..1310 | 17..812 | 3980 | 100 | Plus |
CG31324-RC | 1256 | CG31324-RC | 70..681 | 201..812 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26129003..26129615 | 200..812 | 3065 | 100 | Plus |
3R | 32079331 | 3R | 26124474..26124657 | 17..200 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:41 has no hits.
BS04707.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:15 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:17 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 512..1314 | 10..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:54 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 515..1307 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:16 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 512..1314 | 10..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:17 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31324-RA | 515..1307 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:17 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26124474..26124657 | 17..200 | 100 | -> | Plus |
3R | 26129004..26129612 | 201..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:54 Download gff for
BS04707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21950196..21950379 | 17..200 | 100 | -> | Plus |
arm_3R | 21954726..21955334 | 201..809 | 100 | | Plus |
BS04707.pep Sequence
Translation from 16 to 810
> BS04707.pep
MAPTICSEKKQLRETRRHHGVATAAISSASATASTASSSSSLSVGSTSAA
AATQASSVLNHVAKGSMNSMSRRRPARLQRRMPHILARVSSFSTDTSSGV
ETEVEMDSEQRMQLDDDRYSDARIQGLQQQPHSSSDNIKTVLQPTTASGY
SSKQNRSARAKNCDREVPLQIEDDHDGDSGYEYSQDPIKEQHMYHQNSEG
LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFIASVLANPENRQFRDKMS
PKAEAKVSNMLLRH*
BS04707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31324-PB | 264 | CG31324-PB | 1..264 | 1..264 | 1310 | 100 | Plus |
CG31324-PA | 264 | CG31324-PA | 1..264 | 1..264 | 1310 | 100 | Plus |
CG31324-PC | 203 | CG31324-PC | 1..203 | 62..264 | 1020 | 99.5 | Plus |