Clone Sequence Records
BS04716.3prime Sequence
884 bp (871 high quality bases) assembled on 2005-12-02
> BS04716.3prime
ATGGTCTAGAAAGCTTTCACGTCTGCCTTCCATGATCGTTCCCGGGCGGA
TTAAAGTAGTCCCAATGATGGGTGTGCACCTGCCGCCCCGTTAACAGGAA
TACCAAAACTGCGAGCGTGATCGCGATGAAGAGGATCACCAGTGCTGATA
TATTACGTGTCGCCTGTTGAGGCTCCATTGCTTCACCTCGAACATAGTGC
GTCAGCTGGTTGATAATGTTAACCAGTTCCAGGCTGCAGGCGGAGGCAAA
ATTCCGTCCTGCTTGAGCAACCGTCTTGGGCTGATCGTCGTCGTAGTCTT
CATCCAATGGCTGGGTAGCACTGCGGGTACGAGAGCGACGCGATCGCGAG
CGTGGTCGCTCCACCAAGTGTTCCTCTGGTTCGGAACCTGATTCCGGTTC
GAGGGGTTCCTGGACATGACGACGTCGACATTTGTGCGGTGCCTTTCGCT
CGACTGATTTCAAGTCCTCCGCTTCCTCCGCCTCTGCGCTTCGCTGCAGA
TTAAAGAAGGCTAGTGGGGCCAAGGACTGAAGGTACTCAACACTGGGATA
GGCTGTCGGCGGTGGAGGTAGTGGCAACAAACCGGCATCCGTCTGGGTCT
GCTCGTCCAGATTGGATGCGGGTGGCACTTGCTCGGTGGTCTTGCTGTGA
CGAGGTGGCTTAACGGGCAGCTCCTTCTCGGAGGTGGCGGGTTCGCTACT
TGCCTGCCGACTAGTCTGGGTTTCAGTGGTAAGCAAAGATGGACGCTGCT
CTCGCTGCACCCGCTCCACAATGTCATCAATAAAACCAGGCGGGAGTTCG
ATATTCTGCACCACCAGTTGTCCGGACTTGCACTGCAGATCGTCTGCTTT
GACTTGATTGCCATGCAGTTGCGATACTTGAATC
BS04716.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32355-PA | 2166 | CG32355-RA | 1299..2166 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RM | 8255 | CG43078-RM | 6679..7546 | 884..17 | 4340 | 100 | Minus |
| CG43078-RL | 8513 | CG43078-RL | 6937..7804 | 884..17 | 4340 | 100 | Minus |
| CG43078-RK | 8538 | CG43078-RK | 6962..7829 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8598041..8598908 | 884..17 | 4340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:06:00 has no hits.
BS04716.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:46 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-PA | 1299..2166 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:34 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-PA | 1299..2166 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:43:58 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 6962..7829 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:00 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 6962..7829 | 17..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:00 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8598041..8598908 | 17..884 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:43:58 Download gff for
BS04716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8591141..8592008 | 17..884 | 100 | | Minus |
BS04716.5prime Sequence
844 bp (726 high quality bases) assembled on 2005-09-08
> BS04716.5prime
CAGTCGACATGAACATCATCGAACCGCGACGCTCCAATGGATCGGCTAAC
AAAACCCTTGAGGATCTGTTGCGCAGCGTAGAGGCAGCTCAGGAGCAGGA
TGAGGTAGATGGAGCTCGAGTTCTGTCCGAGGACGAGCAGCTGGCTAAAG
GTCTGCAGAGATTCCGGGACGCCAATCAGCGCAGCATGTCGGAGCGATCA
CGGGCTTCATCGCAAGCAGATCGTTCCAAGTCGCTGAGCCGGCCGCAGAC
GCCTTCATCGGCGGTGATCATCGAACGCCGTGTGCCCACTCCCAGCCTAA
CTGTTGGCGAGGATGATGCCACGGTGCAGGCCTCACTAATCGTTAGACCC
ATTAGTGCTGCCGATTTGATTGACGATGATCTGCGACGGGAGGAGGAGGA
ACTGCGTCGTGAGGGCTTGCTCTCTGACAGCTCGGTGCAAAGTAAATCCG
ACGTGGAGGATGAGCACGGTGAGGTGGCATTGAGTGACTACGCCGCCAGC
ACGGCAGATTTGGACGCAGCGGTGGAGCAACTACAGCAGGCTCAGCTGGA
GAGCGACTACGAGAGTAAACTGGAGGACGATGAAGTTGAACGAACCCTCA
GGGACAGCGAGTATGAGGAGGAAAAGTTTTCGGAGCAGGAGGAAGAGCAG
GAAACAACGAAATTGGAAAAGGAACTAACTGAGCAGGAACTGGAGGAAGC
TCTGGAGAAGGAGCTACAGGAAGCAATGGAGAATGAGCTATCTGACTACC
GCCAAAAGAGAAGGAGCAAGAATCAGAGCAAGAGCAGGCCTTCTCCGAGG
AGGAATTGGCTGCTTCCGAGATTGATTACCACCAATCTGAAAAG
BS04716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32355-PA | 2166 | CG32355-RA | 1..750 | 9..758 | 3675 | 99.6 | Plus |
| CG32355-PA | 2166 | CG32355-RA | 751..834 | 758..841 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RM | 8255 | CG43078-RM | 5378..6214 | 6..841 | 4115 | 99.5 | Plus |
| CG43078-RL | 8513 | CG43078-RL | 5636..6472 | 6..841 | 4115 | 99.5 | Plus |
| CG43078-RK | 8538 | CG43078-RK | 5661..6497 | 6..841 | 4115 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8596740..8597576 | 6..841 | 4090 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:08:31 has no hits.
BS04716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:55:47 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-PA | 1..837 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:35 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-PA | 1..837 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:08:17 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 5656..6500 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:44:24 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 5656..6500 | 1..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:44:24 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8596735..8597579 | 1..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:08:17 Download gff for
BS04716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8589835..8590679 | 1..844 | 99 | | Plus |
BS04716.complete Sequence
2198 bp assembled on 2008-08-14
GenBank Submission: FJ635016
> BS04716.complete
GAAGTTATCAGTCGACATGAAGATCATCGAACCGCGACGCTCCAATGGAT
CGGCTAACAAAACCCTTGAGGATCTGTTGCGCAGCGTAGAGGCAGCTCAG
GAGCAGGATGAGGTAGATGGAGCTCGAGTTCTGTCCGAGGACGAGCAGCT
GGCTAAAGGTCTGCAGAGATTCCGGGACGCCAATCAGCGCAGCATGTCGG
AGCGATCACGGGCTTCATCGCAAGCAGATCGTTCCAAGTCGCTGAGCCGG
CCGCAGACGCCTTCATCGGCGGTGATCATCGAACGCCGTGTGCCCACTCC
CAGCCTAACTGTTGGCGAGGATGATGCCACGGTGCAGGCCTCACTAATCG
TTAGACCCATTAGTGCTGCCGATTTGATTGACGATGATCTGCGACGGGAG
GAGGAGGAACTGCGTCGTGAGGGCTTGCTCTCTGACAGCTCGGTGCAAAG
TAAATCCGACGTGGAGGATGAGCACGGTGAGGTGGCATTGAGTGACTACG
CCGCCAGCACGGCAGATTTGGACGCAGCGGTGGAGCAACTACAGCAGGCT
CAGCTGGAGAGCGACTACGAGAGTAAACTGGAGGACGATGAAGTTGAACG
AACCCTCAGGGACAGCGAGTATGAGGAGGAAAAGTTTTCGGAGCAGGAGG
AAGAGCAGGAAACAACGAAATTGGAAAAGGAACTAACTGAGCAGGAACTG
GAGGAGGCTCTGGAGAAGGAGCTACAGGAAGCAATGGAGAAGGAGCTATC
TGACTACCGCCAAAAGGAGAAGGAGCAAGAATCAGAGCAAGAGCAGGCCT
TCTCCGAGGAGGAATTGGCTGCTTCCGAGATTGATTACCACCAATCTGAA
GAGGAGCAAGCCACCTCCGAGGTCGGTTATCACCCATCTGAGGATGAGCA
TCCCTTATCCGATGGTGAACAGCCTCTCTCCGAGGAGGAGCACACTTTAT
CCGACACGGAACATACCCCGACTGAGCCCGAAACCCAGAAAGTTGAGGAA
ACCATTCACAAATCCACAGCTAGCGAACCCACCGAGGCCGAAGTTGAGCT
AAAATTCGTTGCCACTTTGCCCACCGAACCAGCTTTTGGAGACAAAGAGG
AGGAACCAGAGGAGCCTCCTCTTCCACCACCACGTCGCAAGTCCACCACC
GCCCTAGAAACCATTGCCACCACAGCCCTGACCATAGCCGAACAGTACAG
CCGCGAGCTTACGCCCATCCAGACGGTGCAATCTGCGCCAGAACCGCAAT
TCCCCAGTCGCCTGGCCGAATTAGAGGTGGAACGTCTGCGCGTCCATGCC
CTGCAGGCTGGTCAGATTCAAGTATCGCAACTGCATGGCAATCAAGTCAA
AGCAGACGATCTGCAGTGCAAGTCCGGACAACTGGTGGTGCAGAATATCG
AACTCCCGCCTGGTTTTATTGATGACATTGTGGAGCGGGTGCAGCGAGAG
CAGCGTCCATCTTTGCTTACCACTGAAACCCAGACTAGTCGGCAGGCAAG
TAGCGAACCCGCCACCTCCGAGAAGGAGCTGCCCGTTAAGCCACCTCGTC
ACAGCAAGACCACCGAGCAAGTGCCACCCGCATCCAATCTGGACGAGCAG
ACCCAGACGGATGCCGGTTTGTTGCCACTACCTCCACCGCCGACAGCCTA
TCCCAGTGTTGAGTACCTTCAGTCCTTGGCCCCACTAGCCTTCTTTAATC
TGCAGCGAAGCGCAGAGGCGGAGGAAGCGGAGGACTTGAAATCAGTCGAG
CGAAAGGCACCGCACAAATGTCGACGTCGTCATGTCCAGGAACCCCTCGA
ACCGGAATCAGGTTCCGAACCAGAGGAACACTTGGTGGAGCGACCACGCT
CGCGATCGCGTCGCTCTCGTACCCGCAGTGCTACCCAGCCATTGGATGAA
GACTACGACGACGATCAGCCCAAGACGGTTGCTCAAGCAGGACGGAATTT
TGCCTCCGCCTGCAGCCTGGAACTGGTTAACATTATCAACCAGCTGACGC
ACTATGTTCGAGGTGAAGCAATGGAGCCTCAACAGGCGACACGTAATATA
TCAGCACTGGTGATCCTCTTCATCGCGATCACGCTCGCAGTTTTGGTATT
CCTGTTAACGGGGCGGCAGGTGCACACCCATCATTGGGACTACTTTAATC
CGCCCGGGAACGATCATGGAAGGCAGACGTGAAAGCTTTCTAGACCAT
BS04716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RM | 7287 | CG43078-PM | 5119..7287 | 14..2182 | 10845 | 100 | Plus |
| CG43078-RL | 7545 | CG43078-PL | 5377..7545 | 14..2182 | 10845 | 100 | Plus |
| CG43078-RK | 7395 | CG43078-PK | 5227..7395 | 14..2182 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-RM | 8255 | CG43078-RM | 5378..7546 | 14..2182 | 10845 | 100 | Plus |
| CG43078-RL | 8513 | CG43078-RL | 5636..7804 | 14..2182 | 10845 | 100 | Plus |
| CG43078-RK | 8538 | CG43078-RK | 5661..7829 | 14..2182 | 10845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8596740..8598908 | 14..2182 | 10845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:35:42 has no hits.
BS04716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:06 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-RA | 99..2269 | 10..2182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:23 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 5664..7828 | 17..2181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:13 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32355-RA | 104..2268 | 17..2181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:09 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43078-RK | 5664..7828 | 17..2181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:09 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8596743..8598907 | 17..2181 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:23 Download gff for
BS04716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8589843..8592007 | 17..2181 | 100 | | Plus |
BS04716.pep Sequence
Translation from 16 to 2181
> BS04716.pep
MKIIEPRRSNGSANKTLEDLLRSVEAAQEQDEVDGARVLSEDEQLAKGLQ
RFRDANQRSMSERSRASSQADRSKSLSRPQTPSSAVIIERRVPTPSLTVG
EDDATVQASLIVRPISAADLIDDDLRREEEELRREGLLSDSSVQSKSDVE
DEHGEVALSDYAASTADLDAAVEQLQQAQLESDYESKLEDDEVERTLRDS
EYEEEKFSEQEEEQETTKLEKELTEQELEEALEKELQEAMEKELSDYRQK
EKEQESEQEQAFSEEELAASEIDYHQSEEEQATSEVGYHPSEDEHPLSDG
EQPLSEEEHTLSDTEHTPTEPETQKVEETIHKSTASEPTEAEVELKFVAT
LPTEPAFGDKEEEPEEPPLPPPRRKSTTALETIATTALTIAEQYSRELTP
IQTVQSAPEPQFPSRLAELEVERLRVHALQAGQIQVSQLHGNQVKADDLQ
CKSGQLVVQNIELPPGFIDDIVERVQREQRPSLLTTETQTSRQASSEPAT
SEKELPVKPPRHSKTTEQVPPASNLDEQTQTDAGLLPLPPPPTAYPSVEY
LQSLAPLAFFNLQRSAEAEEAEDLKSVERKAPHKCRRRHVQEPLEPESGS
EPEEHLVERPRSRSRRSRTRSATQPLDEDYDDDQPKTVAQAGRNFASACS
LELVNIINQLTHYVRGEAMEPQQATRNISALVILFIAITLAVLVFLLTGR
QVHTHHWDYFNPPGNDHGRQT*
BS04716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43078-PM | 2428 | CG43078-PM | 1708..2428 | 1..721 | 3634 | 100 | Plus |
| CG43078-PL | 2514 | CG43078-PL | 1794..2514 | 1..721 | 3634 | 100 | Plus |
| CG43078-PK | 2464 | CG43078-PK | 1744..2464 | 1..721 | 3634 | 100 | Plus |
| CG43078-PJ | 2509 | CG43078-PJ | 1789..2509 | 1..721 | 3634 | 100 | Plus |
| CG43078-PI | 1957 | CG43078-PI | 1237..1957 | 1..721 | 3634 | 100 | Plus |
