Clone BS04728 Report

Search the DGRC for BS04728

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptDsp1-RA
Protein status:BS04728.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04728.3prime Sequence

947 bp (866 high quality bases) assembled on 2005-12-02

> BS04728.3prime
ATGGTCTAGAAAGCTTCTATTGGTTCTCGTCATCATCTCCATCGCCGTCG
TCGTCGTCGTGCTGCTCTTCCAGCTGCTGGTGCTGCTGCTGGGCAGCGGC
GGCAAGTAACGCGGCTTTCTGTGCCTGCGCCTGCATCGACGCCTGCATCG
ACGGTGCGGACATGGCTATTTTCCCGCTCGTCTTGTACTCGGTCATCTCG
CGTTCATATCGAGCCTTGTCCCGCTCGGCCATCGACTCGTACTTCTGCTT
GACCTCGGGATCCACATCGGACCACTTTCGTCCCAGCTCTTTGGCGATGT
CGCCCACTCCGAACTCGGGATTAAGTGCCTTCACCTTATTTCTCTCGTCA
TTGCAGAACCAGAAGAACGCAGACAATGAACGTTTTGGAGCATTGGGGTC
CTTGATCTGTTTCCTCTTCTTGCCGCGTCCCACAACCGCTCCCTTGGGCG
GCACATAGTTCTGCATTTCCGCCTCATATCGCTGCTTGTCCTTCTCGGCC
ATTTCGTGGAAGCGCTTCTTCTCCTTGTCCACCATTGTCTTCCACCGTTC
GGCGCACTTCCGCGAGAATTCGGCGAATATCACCGTCTCATCGGGATGCT
TCTTTTTGTGCTCCTCTCTGCAAGTTTGTACAAAGTATGCGTAGGCGGTC
ATTCGGCCTCTGGGCTTGGCATCGGCCTTGACTCTGCTCATGGGGCTCGC
CGAATTGATGACATTCTGTTGCTGCTGCTGCTGTTGCATCTGTTGTTGCT
GCTGGTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGC
TGGTGCTGCAGTTGCGCCGCTGTATTAGCATCGACCTGTCCCTGATTGGC
GGCCGAATACCACCACTGGGAGCCGGGTACGGCTGCTGCTGCTGCTGCCT
GTGCCATATTTAGACGATAATCATAGCCCGTGGTGCCGGCTGCGTTC

BS04728.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12223-PB 1158 Dsp1-RB 228..1158 947..17 4555 99.5 Minus
CG12223-PA 1158 Dsp1-RA 228..1158 947..17 4555 99.5 Minus
CG12223-PC 1158 Dsp1-RC 228..1158 947..17 4555 99.5 Minus
CG12223-PD 1161 Dsp1-RD 231..1161 947..17 4555 99.5 Minus
CG12223-PE 1182 Dsp1-RE 252..1182 947..17 4555 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RG 2359 CG12223-RG 352..1282 947..17 4595 99.6 Minus
Dsp1-RF 2205 CG12223-RF 311..1241 947..17 4595 99.6 Minus
Dsp1-RE 4240 CG12223-RE 493..1423 947..17 4595 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336494..16336743 947..698 1205 98.8 Minus
X 23542271 X 16337625..16337807 199..17 915 100 Minus
X 23542271 X 16337381..16337556 374..199 880 100 Minus
X 23542271 X 16337084..16337251 540..373 840 100 Minus
X 23542271 X 16336850..16337009 698..539 785 99.4 Minus
Blast to na_te.dros performed 2015-01-30 15:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6880 133..11 134 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6840 102..60 109 75 Minus

BS04728.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:01 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-PE 252..1182 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:53 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12223-PE 252..1182 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:17:03 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RE 493..1429 6..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:05 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RE 493..1429 6..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:05 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16336494..16336743 698..947 98 -> Minus
X 16336851..16337009 539..697 99 -> Minus
X 16337086..16337249 375..538 100 -> Minus
X 16337381..16337555 200..374 100 -> Minus
X 16337625..16337813 6..199 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:17:03 Download gff for BS04728.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16230527..16230776 698..947 98 -> Minus
arm_X 16230884..16231042 539..697 99 -> Minus
arm_X 16231119..16231282 375..538 100 -> Minus
arm_X 16231414..16231588 200..374 100 -> Minus
arm_X 16231658..16231846 6..199 97   Minus

BS04728.5prime Sequence

774 bp (769 high quality bases) assembled on 2005-11-29

> BS04728.5prime
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAA

BS04728.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12223-PB 1158 Dsp1-RB 1..758 17..774 3690 99.4 Plus
CG12223-PA 1158 Dsp1-RA 1..758 17..774 3690 99.4 Plus
CG12223-PC 1158 Dsp1-RC 1..758 17..774 3690 99.4 Plus
CG12223-PE 1182 Dsp1-RE 46..782 38..774 3585 99.4 Plus
CG12223-PD 1161 Dsp1-RD 25..761 38..774 3585 99.4 Plus
CG12223-PE 1182 Dsp1-RE 1..27 17..43 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 4511 CG12223-RC 718..1475 17..774 3730 99.5 Plus
Dsp1-RA 3990 CG12223-RA 197..954 17..774 3730 99.5 Plus
Dsp1-RB 3915 CG12223-RB 122..879 17..774 3730 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336288..16336743 38..493 2235 99.3 Plus
X 23542271 X 16336850..16337009 493..652 785 99.4 Plus
X 23542271 X 16337084..16337207 651..774 620 100 Plus
Blast to na_te.dros performed 2015-02-11 10:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2854 21..477 336 56.8 Plus

BS04728.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:02 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-PA 1..756 17..772 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:55 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12223-PC 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:54 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 117..879 9..774 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:02 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 117..879 9..774 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:02 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16336851..16337009 494..652 99 -> Plus
X 16337086..16337207 653..774 100   Plus
X 16334388..16334413 17..40 92 -> Plus
X 16336291..16336743 41..493 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:54 Download gff for BS04728.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16228421..16228446 17..40 92 -> Plus
arm_X 16230324..16230776 41..493 99 -> Plus
arm_X 16230884..16231042 494..652 99 -> Plus
arm_X 16231119..16231240 653..774 100   Plus

BS04728.complete Sequence

1190 bp (1190 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635017

> BS04728.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAA
AGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGT
ACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATGACC
GAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGC
GTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCC
AGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGCGAT
GGAGATGATGACGAGAACCAATAGAAGCTTTCTAGACCAT

BS04728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 1158 CG12223-PC 1..1158 17..1174 5730 99.7 Plus
Dsp1-RA 1158 CG12223-PA 1..1158 17..1174 5730 99.7 Plus
Dsp1-RB 1158 CG12223-PB 1..1158 17..1174 5730 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-RC 4511 CG12223-RC 718..1875 17..1174 5730 99.7 Plus
Dsp1-RA 3990 CG12223-RA 197..1354 17..1174 5730 99.7 Plus
Dsp1-RB 3915 CG12223-RB 122..1279 17..1174 5730 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16336288..16336743 38..493 2235 99.3 Plus
X 23542271 X 16337625..16337807 992..1174 915 100 Plus
X 23542271 X 16337381..16337556 817..992 880 100 Plus
X 23542271 X 16337084..16337251 651..818 840 100 Plus
X 23542271 X 16336850..16337009 493..652 785 99.4 Plus
Blast to na_te.dros performed 2014-11-27 02:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2854 21..477 336 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6880 1058..1180 134 61.4 Plus

BS04728.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:25 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RA 1..1158 17..1174 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:32 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RC 713..1881 9..1185 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:52 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 122..1279 17..1174 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:25 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RA 192..1360 9..1185 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:48 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
Dsp1-RB 122..1279 17..1174 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:48 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
X 16334390..16334413 17..40 100 -> Plus
X 16336291..16336743 41..493 99 -> Plus
X 16336851..16337009 494..652 99 -> Plus
X 16337086..16337249 653..816 100 -> Plus
X 16337381..16337555 817..991 100 -> Plus
X 16337625..16337807 992..1174 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:52 Download gff for BS04728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16228423..16228446 17..40 100 -> Plus
arm_X 16230324..16230776 41..493 99 -> Plus
arm_X 16230884..16231042 494..652 99 -> Plus
arm_X 16231119..16231282 653..816 100 -> Plus
arm_X 16231414..16231588 817..991 100 -> Plus
arm_X 16231658..16231840 992..1174 100   Plus

BS04728.pep Sequence

Translation from 16 to 1173

> BS04728.pep
MEHFHQIQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVGT
QQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVP
GSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQ
QQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIF
AEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGR
GKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRK
WSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQ
AQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ*

BS04728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsp1-PC 385 CG12223-PC 1..385 1..385 2005 100 Plus
Dsp1-PA 385 CG12223-PA 1..385 1..385 2005 100 Plus
Dsp1-PB 385 CG12223-PB 1..385 1..385 2005 100 Plus
Dsp1-PG 386 CG12223-PG 1..386 1..385 1993 99.7 Plus
Dsp1-PD 386 CG12223-PD 1..386 1..385 1993 99.7 Plus