Clone Sequence Records
BS04728.3prime Sequence
947 bp (866 high quality bases) assembled on 2005-12-02
> BS04728.3prime
ATGGTCTAGAAAGCTTCTATTGGTTCTCGTCATCATCTCCATCGCCGTCG
TCGTCGTCGTGCTGCTCTTCCAGCTGCTGGTGCTGCTGCTGGGCAGCGGC
GGCAAGTAACGCGGCTTTCTGTGCCTGCGCCTGCATCGACGCCTGCATCG
ACGGTGCGGACATGGCTATTTTCCCGCTCGTCTTGTACTCGGTCATCTCG
CGTTCATATCGAGCCTTGTCCCGCTCGGCCATCGACTCGTACTTCTGCTT
GACCTCGGGATCCACATCGGACCACTTTCGTCCCAGCTCTTTGGCGATGT
CGCCCACTCCGAACTCGGGATTAAGTGCCTTCACCTTATTTCTCTCGTCA
TTGCAGAACCAGAAGAACGCAGACAATGAACGTTTTGGAGCATTGGGGTC
CTTGATCTGTTTCCTCTTCTTGCCGCGTCCCACAACCGCTCCCTTGGGCG
GCACATAGTTCTGCATTTCCGCCTCATATCGCTGCTTGTCCTTCTCGGCC
ATTTCGTGGAAGCGCTTCTTCTCCTTGTCCACCATTGTCTTCCACCGTTC
GGCGCACTTCCGCGAGAATTCGGCGAATATCACCGTCTCATCGGGATGCT
TCTTTTTGTGCTCCTCTCTGCAAGTTTGTACAAAGTATGCGTAGGCGGTC
ATTCGGCCTCTGGGCTTGGCATCGGCCTTGACTCTGCTCATGGGGCTCGC
CGAATTGATGACATTCTGTTGCTGCTGCTGCTGTTGCATCTGTTGTTGCT
GCTGGTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGTTGCTGCTGC
TGGTGCTGCAGTTGCGCCGCTGTATTAGCATCGACCTGTCCCTGATTGGC
GGCCGAATACCACCACTGGGAGCCGGGTACGGCTGCTGCTGCTGCTGCCT
GTGCCATATTTAGACGATAATCATAGCCCGTGGTGCCGGCTGCGTTC
BS04728.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12223-PB | 1158 | Dsp1-RB | 228..1158 | 947..17 | 4555 | 99.5 | Minus |
CG12223-PA | 1158 | Dsp1-RA | 228..1158 | 947..17 | 4555 | 99.5 | Minus |
CG12223-PC | 1158 | Dsp1-RC | 228..1158 | 947..17 | 4555 | 99.5 | Minus |
CG12223-PD | 1161 | Dsp1-RD | 231..1161 | 947..17 | 4555 | 99.5 | Minus |
CG12223-PE | 1182 | Dsp1-RE | 252..1182 | 947..17 | 4555 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RG | 2359 | CG12223-RG | 352..1282 | 947..17 | 4595 | 99.6 | Minus |
Dsp1-RF | 2205 | CG12223-RF | 311..1241 | 947..17 | 4595 | 99.6 | Minus |
Dsp1-RE | 4240 | CG12223-RE | 493..1423 | 947..17 | 4595 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336494..16336743 | 947..698 | 1205 | 98.8 | Minus |
X | 23542271 | X | 16337625..16337807 | 199..17 | 915 | 100 | Minus |
X | 23542271 | X | 16337381..16337556 | 374..199 | 880 | 100 | Minus |
X | 23542271 | X | 16337084..16337251 | 540..373 | 840 | 100 | Minus |
X | 23542271 | X | 16336850..16337009 | 698..539 | 785 | 99.4 | Minus |
Blast to na_te.dros performed 2015-01-30 15:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6880 | 133..11 | 134 | 61.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6840 | 102..60 | 109 | 75 | Minus |
BS04728.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:01 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-PE | 252..1182 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:53 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12223-PE | 252..1182 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:17:03 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RE | 493..1429 | 6..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:05 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RE | 493..1429 | 6..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:05 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16336494..16336743 | 698..947 | 98 | -> | Minus |
X | 16336851..16337009 | 539..697 | 99 | -> | Minus |
X | 16337086..16337249 | 375..538 | 100 | -> | Minus |
X | 16337381..16337555 | 200..374 | 100 | -> | Minus |
X | 16337625..16337813 | 6..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:17:03 Download gff for
BS04728.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16230527..16230776 | 698..947 | 98 | -> | Minus |
arm_X | 16230884..16231042 | 539..697 | 99 | -> | Minus |
arm_X | 16231119..16231282 | 375..538 | 100 | -> | Minus |
arm_X | 16231414..16231588 | 200..374 | 100 | -> | Minus |
arm_X | 16231658..16231846 | 6..199 | 97 | | Minus |
BS04728.5prime Sequence
774 bp (769 high quality bases) assembled on 2005-11-29
> BS04728.5prime
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAA
BS04728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12223-PB | 1158 | Dsp1-RB | 1..758 | 17..774 | 3690 | 99.4 | Plus |
CG12223-PA | 1158 | Dsp1-RA | 1..758 | 17..774 | 3690 | 99.4 | Plus |
CG12223-PC | 1158 | Dsp1-RC | 1..758 | 17..774 | 3690 | 99.4 | Plus |
CG12223-PE | 1182 | Dsp1-RE | 46..782 | 38..774 | 3585 | 99.4 | Plus |
CG12223-PD | 1161 | Dsp1-RD | 25..761 | 38..774 | 3585 | 99.4 | Plus |
CG12223-PE | 1182 | Dsp1-RE | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 4511 | CG12223-RC | 718..1475 | 17..774 | 3730 | 99.5 | Plus |
Dsp1-RA | 3990 | CG12223-RA | 197..954 | 17..774 | 3730 | 99.5 | Plus |
Dsp1-RB | 3915 | CG12223-RB | 122..879 | 17..774 | 3730 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336288..16336743 | 38..493 | 2235 | 99.3 | Plus |
X | 23542271 | X | 16336850..16337009 | 493..652 | 785 | 99.4 | Plus |
X | 23542271 | X | 16337084..16337207 | 651..774 | 620 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2854 | 21..477 | 336 | 56.8 | Plus |
BS04728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:02 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:19:55 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12223-PC | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:54 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 117..879 | 9..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:02 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 117..879 | 9..774 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:02 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16336851..16337009 | 494..652 | 99 | -> | Plus |
X | 16337086..16337207 | 653..774 | 100 | | Plus |
X | 16334388..16334413 | 17..40 | 92 | -> | Plus |
X | 16336291..16336743 | 41..493 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:54 Download gff for
BS04728.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16228421..16228446 | 17..40 | 92 | -> | Plus |
arm_X | 16230324..16230776 | 41..493 | 99 | -> | Plus |
arm_X | 16230884..16231042 | 494..652 | 99 | -> | Plus |
arm_X | 16231119..16231240 | 653..774 | 100 | | Plus |
BS04728.complete Sequence
1190 bp (1190 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635017
> BS04728.complete
GAAGTTATCAGTCGACATGGAACACTTTCATCAAATACAGCAATTGGCTG
CTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACACCAGGTG
GTCGTCCAGCAGAATCAGCAGCAGGCGCACCAGAACAGCTCCAATACCAC
AGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCCAGCAGTT
TTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATCGAACGCA
GCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGGCAGCAGC
AGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCCAATCAGG
GACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCAGCAGCAA
CAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGCAACAACA
GATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCGAGCCCCA
TGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGACCGCCTAC
GCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGCATCCCGA
TGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAACGGTGGA
AGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGCCGAGAAG
GACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGCCCAAGGG
AGCGGTTGTGGGACGCGGCAAGAAGAGGAAACAGATCAAGGACCCCAATG
CTCCAAAACGTTCATTGTCTGCGTTCTTCTGGTTCTGCAATGACGAGAGA
AATAAGGTGAAGGCACTTAATCCCGAGTTCGGAGTGGGCGACATCGCCAA
AGAGCTGGGACGAAAGTGGTCCGATGTGGATCCCGAGGTCAAGCAGAAGT
ACGAGTCGATGGCCGAGCGGGACAAGGCTCGATATGAACGCGAGATGACC
GAGTACAAGACGAGCGGGAAAATAGCCATGTCCGCACCGTCGATGCAGGC
GTCGATGCAGGCGCAGGCACAGAAAGCCGCGTTACTTGCCGCCGCTGCCC
AGCAGCAGCACCAGCAGCTGGAAGAGCAGCACGACGACGACGACGGCGAT
GGAGATGATGACGAGAACCAATAGAAGCTTTCTAGACCAT
BS04728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 1158 | CG12223-PC | 1..1158 | 17..1174 | 5730 | 99.7 | Plus |
Dsp1-RA | 1158 | CG12223-PA | 1..1158 | 17..1174 | 5730 | 99.7 | Plus |
Dsp1-RB | 1158 | CG12223-PB | 1..1158 | 17..1174 | 5730 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-RC | 4511 | CG12223-RC | 718..1875 | 17..1174 | 5730 | 99.7 | Plus |
Dsp1-RA | 3990 | CG12223-RA | 197..1354 | 17..1174 | 5730 | 99.7 | Plus |
Dsp1-RB | 3915 | CG12223-RB | 122..1279 | 17..1174 | 5730 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16336288..16336743 | 38..493 | 2235 | 99.3 | Plus |
X | 23542271 | X | 16337625..16337807 | 992..1174 | 915 | 100 | Plus |
X | 23542271 | X | 16337381..16337556 | 817..992 | 880 | 100 | Plus |
X | 23542271 | X | 16337084..16337251 | 651..818 | 840 | 100 | Plus |
X | 23542271 | X | 16336850..16337009 | 493..652 | 785 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 02:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2854 | 21..477 | 336 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6880 | 1058..1180 | 134 | 61.4 | Plus |
BS04728.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:25 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RA | 1..1158 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:32 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RC | 713..1881 | 9..1185 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:52 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 122..1279 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:25 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RA | 192..1360 | 9..1185 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:48 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsp1-RB | 122..1279 | 17..1174 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:48 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16334390..16334413 | 17..40 | 100 | -> | Plus |
X | 16336291..16336743 | 41..493 | 99 | -> | Plus |
X | 16336851..16337009 | 494..652 | 99 | -> | Plus |
X | 16337086..16337249 | 653..816 | 100 | -> | Plus |
X | 16337381..16337555 | 817..991 | 100 | -> | Plus |
X | 16337625..16337807 | 992..1174 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:52 Download gff for
BS04728.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16228423..16228446 | 17..40 | 100 | -> | Plus |
arm_X | 16230324..16230776 | 41..493 | 99 | -> | Plus |
arm_X | 16230884..16231042 | 494..652 | 99 | -> | Plus |
arm_X | 16231119..16231282 | 653..816 | 100 | -> | Plus |
arm_X | 16231414..16231588 | 817..991 | 100 | -> | Plus |
arm_X | 16231658..16231840 | 992..1174 | 100 | | Plus |
BS04728.pep Sequence
Translation from 16 to 1173
> BS04728.pep
MEHFHQIQQLAAQQQQQVQQQQLQQHQVVVQQNQQQAHQNSSNTTAGVGT
QQLFTYKMASSFPNPATTMAQVVATSNAAGTTGYDYRLNMAQAAAAAAVP
GSQWWYSAANQGQVDANTAAQLQHQQQQQQQQQQQQQQQHQQQQQMQQQQ
QQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIF
AEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGR
GKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRK
WSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQ
AQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ*
BS04728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsp1-PC | 385 | CG12223-PC | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PA | 385 | CG12223-PA | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PB | 385 | CG12223-PB | 1..385 | 1..385 | 2005 | 100 | Plus |
Dsp1-PG | 386 | CG12223-PG | 1..386 | 1..385 | 1993 | 99.7 | Plus |
Dsp1-PD | 386 | CG12223-PD | 1..386 | 1..385 | 1993 | 99.7 | Plus |