Clone BS04748 Report

Search the DGRC for BS04748

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG3156-RA
Protein status:BS04748.pep: full length peptide match
Sequenced Size:2111

Clone Sequence Records

BS04748.complete Sequence

2111 bp assembled on 2009-12-07

GenBank Submission: KX799267

> BS04748.complete
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAGCCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAGGCGGATCACCAA
AGTAGAACTAGACAAGTACGCCGAGATTATGAAGTTTGCGGAGGAGCGAT
TTGGTAATGTTAAAACGGTTAAGACCTTCTGCCGAGAACAACAGGAAGTA
GCTGCCTTCGATGGCAAACTGGATGAAGCTCTCCAGATTGGCTACAAAGA
GACACGTGCCAGAGCTATTTTCTTTGGATTGACTGGCTTCTGTGGCAACT
TCATCATTATTTCAGTGCTGTATTATGGAGGAACCTTGGTATTACAAGAC
TCGCTGACGATTGGAGCCCTCACAGCCTTCATGCTGTACGCCGGTTATGT
GGCCATCTCAATGAATGGGTTGTCCAACTTCTATAGCCAACTGAACAAAG
GCATTGGAGCCTCGGAGCGTATTTGGGAGATCCTGGACAGGGAGTGTTCT
ATACCCATTGACAAAGGTGTCGTGCCGTTGGAGAAGCCGGTGGGCGAAGT
TGGATTCCAGAATGTATTCTTTACGTTTCCAACTAGACCTGAATCGGCCG
TCCTCACCGACTTTTCGCTAAATTTGATGCCGGGAACAACCACAGCGGTA
GTGGGTCGTTCAGGATCTGGAAAGACGACGATAGCTCTGCTAATGCTCCG
ACTATATGACCCCCAAGGGGGAACAGTGCATTTGGATGGCATAGATTTGC
GAACAGTGAATCCACAGTGGTTGCGAAATAACATTGGTGCCGTCAGTCAG
GAGCCGGTGCTCTTCTCGTGCTCCATTCGAGAGAATATTCTTTATGGCGC
TAATCCTGGCGAAACACCGAGCCCGGAGCGACTGCAGCAGGTTATTGAAG
ATGCAAATGTCAGCCAGTTCACCGACCAACTGCCGGATGGACTAGACACG
CTCGTCGGCCAACGGGGAATGATGCTCAGTGGCGGACAAAAGCAAAGAGT
AGCCATTGCCAGGGCTCTAATTAAGAACCCCGCTATCCTGATTTTGGATG
AAGCTACCAGTGCGTTGGACGCCGTTTCGGAAAATCTGGTGCAGAATGCC
TTAGACAATCTTATCCAGGGACGCACCGTACTGACAATTGCCCATCGACT
CAGTACAATTCGAAATGCGGATCAAATCGCCGTCTTAAGCGACGGAAAAA
TTGTAGAGCAGGGCAGCTACAACGAGCTTATGGGCATCCAGGAGGGCGTC
TTCCGGGAACTGGTGGCCAGCCAAGCGTTCGGCAGCCGAAACTAAAAGCT
TTCTAGACCAT

BS04748.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2079 CG3156-PA 1..2079 17..2095 10395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 113..2194 17..2098 10410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 489484..490228 1081..1825 3725 100 Plus
X 23542271 X 487990..488362 17..389 1865 100 Plus
X 23542271 X 489142..489424 799..1081 1415 100 Plus
X 23542271 X 490300..490574 1824..2098 1375 100 Plus
X 23542271 X 488419..488628 387..596 1050 100 Plus
X 23542271 X 488873..489076 596..799 1020 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:09:42 has no hits.

BS04748.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:26 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 52..2128 17..2093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:23 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 113..2189 17..2093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:15 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 52..2128 17..2093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:10 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 113..2189 17..2093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:10 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
X 487990..488362 17..389 100 -> Plus
X 488422..488628 390..596 100 -> Plus
X 488874..489076 597..799 100 -> Plus
X 489143..489424 800..1081 100 -> Plus
X 489485..490228 1082..1825 100 -> Plus
X 490302..490569 1826..2093 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:23 Download gff for BS04748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 383176..383457 800..1081 100 -> Plus
arm_X 382023..382395 17..389 100 -> Plus
arm_X 382455..382661 390..596 100 -> Plus
arm_X 382907..383109 597..799 100 -> Plus
arm_X 383518..384261 1082..1825 100 -> Plus
arm_X 384335..384602 1826..2093 100   Plus

BS04748.3prime Sequence

947 bp (869 high quality bases) assembled on 2005-12-02

> BS04748.3prime
ATGGTCTAGAAAGCTTTTAGTTTCGGCTGCCGAACGCTTGGCTGGCCACC
AGTTCCCGGAAGACGCCCTCCTGGATGCCCATAAGCTCGTTGTAGCTGCC
CTGCTCTACAATTTTTCCGTCGCTTAAGACGGCGATTTGATCCGCATTTC
GAATTGTACTGAGTCGATGGGCAATTGTCAGTACGGTGCGTCCCTGGATA
AGATTGTCTAAGGCATTCTGCACCAGATTTTCCGAAACGGCGTCCAACGC
ACTGGTAGCTTCATCCAAAATCAGGATAGCGGGGTTCTTAATTAGAGCCC
TGGCAATGGCTACTCTTTGCTTTTGTCCGCCACTGAGCATCATTCCCCGT
TGGCCGACGAGCGTGTCTAGTCCATCCGGCAGTTGGTCGGTGAACTGGCT
GACATTTGCATCTTCAATAACCTGCTGCAGTCGCTCCGGGCTCGGTGTTT
CGCCAGGATTAGCGCCATAAAGAATATTCTCTCGAATGGAGCACGAGAAG
AGCACCGGCTCCTGACTGACGGCACCAATGTTATTTCGCAACCACTGTGG
ATTCACTGTTCGCAAATCTATGCCATCCAAATGCACTGTTCCCCCTTGGG
GGTCATATAGTCGGAGCATTAGCAGAGCTATCGTCGTCTTTCCAGATCCT
GAACGACCCACTACCGCTGTGGTTGTTCCCGGCATCAAATTTAGCGAAAA
GTCGGTGAGGACGGCCGATTCAGGTCTAGTTGGAAACGTAAAGAATACAT
TCTGGAATCCAACTTCGCCCACCGGCTTCTCCAACGGCACGACACCTTTG
TCAATGGGTATAGAACACTCCCTGTCCAGGATCTCCCAAATACGCTCCGA
GGCTCCAATGCCTTTGTTCAGTTGGCTATAGAAGTTGGACACCCCATTCA
TTGAGATGGCCACATAACCGGCGTACAGCATGAAGGCTGTGAGGGCT

BS04748.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 2079 CG3156-RA 1149..2079 947..17 4630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 1261..2194 947..14 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 489568..490228 947..287 3290 99.8 Minus
X 23542271 X 490300..490574 288..14 1375 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:24:06 has no hits.

BS04748.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:28 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1149..2079 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:20:27 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1149..2079 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:25:18 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 1261..2194 14..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:48 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 1261..2194 14..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:48 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
X 490302..490574 14..286 100   Minus
X 489568..490228 287..947 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:25:18 Download gff for BS04748.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 383601..384261 287..947 99 -> Minus
arm_X 384335..384607 14..286 100   Minus

BS04748.5prime Sequence

892 bp (767 high quality bases) assembled on 2005-12-02

> BS04748.5prime
GAAGTTATCAGTCGACATGCTGTTAAACTGTACGAGGCTCACACACCTCT
GCACGACTCTCCGGGTCAGGAAAAGCAGCCAAATAAGGTTGTCCACATCA
TATAATCACCATTTGGGCAGGTGCCTCCACCATCGAACCGCCCGGTCGCT
TCAACACAGCCTTCCACCGCCGAACCGTTACCATAGCCACCTGCACCCAA
CACTCCGCATGCCGTGGTGGTGCATGCGACGTGGATTTGCACAGAGCAGC
AAGTGGTTAGCCAGGAATGCAAAGGCGAACTTACCAACTGCAGTTGGAGC
CGGAATCGTGCCCGCCCCCGTCAAAATGGGCAGATCCCAGTACGGCCGCC
TGCTCAGCCTGACTAAATCGGAGAAATGGGTGCTGACAGCGGGCATTGGC
TGTCTGGTAGTTTCTTCAGCTATCACCATGTCGGTTCCTCTGTTCCTGGG
CAAGGTCATTGATGTAGTCTTTAATAAATCGGGCATGGATAGCGCAGCCA
TGGCCAAATTGGGCGAGTACTCGGTGCTGCTCTTCGGGATCTTCGTGCTG
GGCGGATTCGCCAACTTTGCCCGCGTCCATCTGTTTGGGAATGCGGCTCT
CCGAATAGTGCGCAGTCTAAGATCCCGGCTATACAGATCTATGCTTATGC
AGGAGGTGGGTTGGTTCGATACCAAGGGCACTGGAGAACTAATAAATCGG
CTGAGCAACGATACCTTAATGGTGGGCACCTCGTTGAGCCAGAACGTATC
GGATGGTCTGCGATCTGTAACCATGATCGGCGTCGGCACAGGCATGATGA
TCTACACCTCCCCCCAGTTGGCTGCCGTGAGTGCCTTGGTGGTTCCCGCG
ATGGCGGGCATGGCCATCGTGTACGGACGCTACGTAAGGCGG

BS04748.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 2079 CG3156-RA 1..876 17..892 4355 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-RA 2345 CG3156-RA 113..988 17..892 4365 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 487990..488362 17..389 1865 100 Plus
X 23542271 X 488419..488628 387..596 1050 100 Plus
X 23542271 X 488873..489076 596..799 1005 99.5 Plus
X 23542271 X 489142..489235 799..892 470 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:21:38 has no hits.

BS04748.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:29 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:20:28 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:17:40 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 107..988 7..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:00 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3156-RA 107..988 7..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:00 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
X 488874..489076 597..799 99 -> Plus
X 489143..489235 800..892 100   Plus
X 487984..488362 7..389 98 -> Plus
X 488422..488628 390..596 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:17:40 Download gff for BS04748.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 382017..382395 7..389 98 -> Plus
arm_X 382455..382661 390..596 100 -> Plus
arm_X 382907..383109 597..799 99 -> Plus
arm_X 383176..383268 800..892 100   Plus

BS04748.pep Sequence

Translation from 16 to 2094

> BS04748.pep
MLLNCTRLTHLCTTLRVRKSSQIRLSTSYNHHLGRCLHHRTARSLQHSLP
PPNRYHSHLHPTLRMPWWCMRRGFAQSSKWLARNAKANLPTAVGAGIVPA
PVKMGRSQYGRLLSLTKSEKWVLTAGIGCLVVSSAITMSVPLFLGKVIDV
VFNKSGMDSAAMAKLGEYSVLLFGIFVLGGFANFARVHLFGNAALRIVRS
LRSRLYRSMLMQEVGWFDTKGTGELINRLSNDTLMVGTSLSQNVSDGLRS
VAMIGVGTGMMIYTSPQLAAVSALVVPAMAGMAIVYGRYVRRITKVELDK
YAEIMKFAEERFGNVKTVKTFCREQQEVAAFDGKLDEALQIGYKETRARA
IFFGLTGFCGNFIIISVLYYGGTLVLQDSLTIGALTAFMLYAGYVAISMN
GLSNFYSQLNKGIGASERIWEILDRECSIPIDKGVVPLEKPVGEVGFQNV
FFTFPTRPESAVLTDFSLNLMPGTTTAVVGRSGSGKTTIALLMLRLYDPQ
GGTVHLDGIDLRTVNPQWLRNNIGAVSQEPVLFSCSIRENILYGANPGET
PSPERLQQVIEDANVSQFTDQLPDGLDTLVGQRGMMLSGGQKQRVAIARA
LIKNPAILILDEATSALDAVSENLVQNALDNLIQGRTVLTIAHRLSTIRN
ADQIAVLSDGKIVEQGSYNELMGIQEGVFRELVASQAFGSRN*

BS04748.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3156-PA 692 CG3156-PA 1..692 1..692 3522 100 Plus
CG1824-PA 761 CG1824-PA 84..700 67..686 987 37 Plus
Mdr50-PA 1313 CG8523-PA 735..1310 112..687 758 34.5 Plus
Mdr49-PB 1101 CG3879-PB 515..1088 104..676 756 32.3 Plus
Mdr49-PA 1302 CG3879-PA 716..1289 104..676 756 32.3 Plus
Mdr50-PA 1313 CG8523-PA 81..668 116..686 745 32.5 Plus
Mdr49-PB 1101 CG3879-PB 16..436 267..684 688 38.1 Plus