Clone Sequence Records
BS04766.3prime Sequence
777 bp (776 high quality bases) assembled on 2005-12-02
> BS04766.3prime
ATGGTCTAGAAAGCTTCTAACAGTCGGTAGAAGGAGTGGCCTGATCTTGT
GCGTTATTTTTGTTTGTTACATTGCTTTGCAAAATGTGACTTTCCTTTTC
TTGTTTGGTGTCATCAGTCTCAGTTTTCGACTTGGGTAGGTTCTTTCGCT
CTTGTTCATCATTGTTAACATTCTCCTCGTCCTCATCATCGTCATAGTTG
GTTGGTTCCTCGCCCTTGCGCAATAGCTTACCAACCAGCTCATATTTTTC
CTTAAACTGCATTTCCCATTCCCGCACAGAGTCCATTTCCACGGCACTTA
AATCGCTCAGGTCATCGTATTCATCCTTGTCAATTGAAACCACGCTGAAA
GTGGCCAAGTTTCGCGAGGCATCTCTACCCGCAAAAGTTGCGTAGGGTCC
ACCTGGGCCGTAAAAACGCCTTCCTTTGCTGACATCGTAAACACTTCCGT
TGACGGCGACCAAAACACGGCCATCCGGCTGAGTTCCATCGTACTGGCGA
AGCTCCTTCACGGTAAAATCGCGTCGGATTTTGGGTAACTCAGGTTCGGA
TGGCTTTGCAACGCCCACGGATGGCACTTCGGTGCGATCCCGAACGATTT
TATAGACCAGGAAGCAGATGATGGCCAGGAGGGCCAGGTTCATTGGACTG
TACAGGATTTCGCGGATTATGTTGCCCAGAAATGAGGAATCATCGTTGTT
TAGATTGTTGCCGATTTCCTTGTCGTAGGCCGAACTAGGATCTGCACCCA
CTTTGGAATCCATGTCGACTGATAACT
BS04766.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9066-PA | 747 | CG9066-RA | 1..747 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1034 | 763..17 | 3735 | 100 | Minus |
MSBP-RB | 1420 | CG9066-RB | 205..951 | 763..17 | 3735 | 100 | Minus |
MSBP-RA | 1487 | CG9066-RA | 272..1018 | 763..17 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 400..763 | 1820 | 100 | Plus |
X | 23542271 | X | 15888036..15888269 | 17..250 | 1170 | 100 | Plus |
X | 23542271 | X | 15888344..15888499 | 250..405 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:46:14 has no hits.
BS04766.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:57 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:05 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:40 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:23 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:23 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888036..15888268 | 17..249 | 100 | <- | Plus |
X | 15888344..15888496 | 250..402 | 100 | <- | Plus |
X | 15889302..15889662 | 403..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:40 Download gff for
BS04766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782069..15782301 | 17..249 | 100 | <- | Plus |
arm_X | 15782377..15782529 | 250..402 | 100 | <- | Plus |
arm_X | 15783335..15783695 | 403..763 | 100 | | Plus |
BS04766.5prime Sequence
777 bp (776 high quality bases) assembled on 2005-11-29
> BS04766.5prime
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTTAGAAGCTTTCTAGACC
BS04766.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9066-PA | 747 | CG9066-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1034 | 17..763 | 3735 | 100 | Plus |
MSBP-RB | 1420 | CG9066-RB | 205..951 | 17..763 | 3735 | 100 | Plus |
MSBP-RA | 1487 | CG9066-RA | 272..1018 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 15888036..15888269 | 763..530 | 1170 | 100 | Minus |
X | 23542271 | X | 15888344..15888499 | 530..375 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:10 has no hits.
BS04766.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:59 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:06 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:40 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:40 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:40 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888036..15888268 | 531..763 | 100 | <- | Minus |
X | 15888344..15888496 | 378..530 | 100 | <- | Minus |
X | 15889302..15889662 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:40 Download gff for
BS04766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782069..15782301 | 531..763 | 100 | <- | Minus |
arm_X | 15782377..15782529 | 378..530 | 100 | <- | Minus |
arm_X | 15783335..15783695 | 17..377 | 100 | | Minus |
BS04766.complete Sequence
779 bp (779 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635018
> BS04766.complete
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTTAGAAGCTTTCTAGACCAT
BS04766.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 747 | CG9066-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
MSBP-RB | 747 | CG9066-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
MSBP-RA | 747 | CG9066-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-RC | 1503 | CG9066-RC | 288..1034 | 17..763 | 3735 | 100 | Plus |
MSBP-RB | 1420 | CG9066-RB | 205..951 | 17..763 | 3735 | 100 | Plus |
MSBP-RA | 1487 | CG9066-RA | 272..1018 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15889299..15889662 | 380..17 | 1820 | 100 | Minus |
X | 23542271 | X | 15888036..15888269 | 763..530 | 1170 | 100 | Minus |
X | 23542271 | X | 15888344..15888499 | 530..375 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:16:54 has no hits.
BS04766.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:50 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:35 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 255..1001 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:31 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:50 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9066-RA | 255..1001 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:08 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MSBP-RA | 272..1018 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:08 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15888036..15888268 | 531..763 | 100 | <- | Minus |
X | 15888344..15888496 | 378..530 | 100 | <- | Minus |
X | 15889302..15889662 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:31 Download gff for
BS04766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15782069..15782301 | 531..763 | 100 | <- | Minus |
arm_X | 15782377..15782529 | 378..530 | 100 | <- | Minus |
arm_X | 15783335..15783695 | 17..377 | 100 | | Minus |
BS04766.pep Sequence
Translation from 16 to 762
> BS04766.pep
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*
BS04766.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MSBP-PC | 248 | CG9066-PC | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PB | 248 | CG9066-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
MSBP-PA | 248 | CG9066-PA | 1..248 | 1..248 | 1285 | 100 | Plus |
CG16957-PB | 192 | CG16957-PB | 29..183 | 41..197 | 305 | 41.5 | Plus |
CG16957-PA | 192 | CG16957-PA | 29..183 | 41..197 | 305 | 41.5 | Plus |