Clone BS04766 Report

Search the DGRC for BS04766

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptMSBP-RA
Protein status:BS04766.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04766.3prime Sequence

777 bp (776 high quality bases) assembled on 2005-12-02

> BS04766.3prime
ATGGTCTAGAAAGCTTCTAACAGTCGGTAGAAGGAGTGGCCTGATCTTGT
GCGTTATTTTTGTTTGTTACATTGCTTTGCAAAATGTGACTTTCCTTTTC
TTGTTTGGTGTCATCAGTCTCAGTTTTCGACTTGGGTAGGTTCTTTCGCT
CTTGTTCATCATTGTTAACATTCTCCTCGTCCTCATCATCGTCATAGTTG
GTTGGTTCCTCGCCCTTGCGCAATAGCTTACCAACCAGCTCATATTTTTC
CTTAAACTGCATTTCCCATTCCCGCACAGAGTCCATTTCCACGGCACTTA
AATCGCTCAGGTCATCGTATTCATCCTTGTCAATTGAAACCACGCTGAAA
GTGGCCAAGTTTCGCGAGGCATCTCTACCCGCAAAAGTTGCGTAGGGTCC
ACCTGGGCCGTAAAAACGCCTTCCTTTGCTGACATCGTAAACACTTCCGT
TGACGGCGACCAAAACACGGCCATCCGGCTGAGTTCCATCGTACTGGCGA
AGCTCCTTCACGGTAAAATCGCGTCGGATTTTGGGTAACTCAGGTTCGGA
TGGCTTTGCAACGCCCACGGATGGCACTTCGGTGCGATCCCGAACGATTT
TATAGACCAGGAAGCAGATGATGGCCAGGAGGGCCAGGTTCATTGGACTG
TACAGGATTTCGCGGATTATGTTGCCCAGAAATGAGGAATCATCGTTGTT
TAGATTGTTGCCGATTTCCTTGTCGTAGGCCGAACTAGGATCTGCACCCA
CTTTGGAATCCATGTCGACTGATAACT

BS04766.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 1..747 763..17 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1034 763..17 3735 100 Minus
MSBP-RB 1420 CG9066-RB 205..951 763..17 3735 100 Minus
MSBP-RA 1487 CG9066-RA 272..1018 763..17 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 400..763 1820 100 Plus
X 23542271 X 15888036..15888269 17..250 1170 100 Plus
X 23542271 X 15888344..15888499 250..405 780 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:46:14 has no hits.

BS04766.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:57 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:05 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:40 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:23 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:23 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15888036..15888268 17..249 100 <- Plus
X 15888344..15888496 250..402 100 <- Plus
X 15889302..15889662 403..763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:40 Download gff for BS04766.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782069..15782301 17..249 100 <- Plus
arm_X 15782377..15782529 250..402 100 <- Plus
arm_X 15783335..15783695 403..763 100   Plus

BS04766.5prime Sequence

777 bp (776 high quality bases) assembled on 2005-11-29

> BS04766.5prime
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTTAGAAGCTTTCTAGACC

BS04766.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9066-PA 747 CG9066-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1034 17..763 3735 100 Plus
MSBP-RB 1420 CG9066-RB 205..951 17..763 3735 100 Plus
MSBP-RA 1487 CG9066-RA 272..1018 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 380..17 1820 100 Minus
X 23542271 X 15888036..15888269 763..530 1170 100 Minus
X 23542271 X 15888344..15888499 530..375 780 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:10 has no hits.

BS04766.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:56:59 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:06 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9066-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:41:40 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:40 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:40 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15888036..15888268 531..763 100 <- Minus
X 15888344..15888496 378..530 100 <- Minus
X 15889302..15889662 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:41:40 Download gff for BS04766.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782069..15782301 531..763 100 <- Minus
arm_X 15782377..15782529 378..530 100 <- Minus
arm_X 15783335..15783695 17..377 100   Minus

BS04766.complete Sequence

779 bp (779 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635018

> BS04766.complete
GAAGTTATCAGTCGACATGGATTCCAAAGTGGGTGCAGATCCTAGTTCGG
CCTACGACAAGGAAATCGGCAACAATCTAAACAACGATGATTCCTCATTT
CTGGGCAACATAATCCGCGAAATCCTGTACAGTCCAATGAACCTGGCCCT
CCTGGCCATCATCTGCTTCCTGGTCTATAAAATCGTTCGGGATCGCACCG
AAGTGCCATCCGTGGGCGTTGCAAAGCCATCCGAACCTGAGTTACCCAAA
ATCCGACGCGATTTTACCGTGAAGGAGCTTCGCCAGTACGATGGAACTCA
GCCGGATGGCCGTGTTTTGGTCGCCGTCAACGGAAGTGTTTACGATGTCA
GCAAAGGAAGGCGTTTTTACGGCCCAGGTGGACCCTACGCAACTTTTGCG
GGTAGAGATGCCTCGCGAAACTTGGCCACTTTCAGCGTGGTTTCAATTGA
CAAGGATGAATACGATGACCTGAGCGATTTAAGTGCCGTGGAAATGGACT
CTGTGCGGGAATGGGAAATGCAGTTTAAGGAAAAATATGAGCTGGTTGGT
AAGCTATTGCGCAAGGGCGAGGAACCAACCAACTATGACGATGATGAGGA
CGAGGAGAATGTTAACAATGATGAACAAGAGCGAAAGAACCTACCCAAGT
CGAAAACTGAGACTGATGACACCAAACAAGAAAAGGAAAGTCACATTTTG
CAAAGCAATGTAACAAACAAAAATAACGCACAAGATCAGGCCACTCCTTC
TACCGACTGTTAGAAGCTTTCTAGACCAT

BS04766.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 747 CG9066-PC 1..747 17..763 3735 100 Plus
MSBP-RB 747 CG9066-PB 1..747 17..763 3735 100 Plus
MSBP-RA 747 CG9066-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-RC 1503 CG9066-RC 288..1034 17..763 3735 100 Plus
MSBP-RB 1420 CG9066-RB 205..951 17..763 3735 100 Plus
MSBP-RA 1487 CG9066-RA 272..1018 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15889299..15889662 380..17 1820 100 Minus
X 23542271 X 15888036..15888269 763..530 1170 100 Minus
X 23542271 X 15888344..15888499 530..375 780 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:16:54 has no hits.

BS04766.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:50 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:35 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 255..1001 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:31 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:50 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
CG9066-RA 255..1001 17..763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:08 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
MSBP-RA 272..1018 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:08 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
X 15888036..15888268 531..763 100 <- Minus
X 15888344..15888496 378..530 100 <- Minus
X 15889302..15889662 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:31 Download gff for BS04766.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15782069..15782301 531..763 100 <- Minus
arm_X 15782377..15782529 378..530 100 <- Minus
arm_X 15783335..15783695 17..377 100   Minus

BS04766.pep Sequence

Translation from 16 to 762

> BS04766.pep
MDSKVGADPSSAYDKEIGNNLNNDDSSFLGNIIREILYSPMNLALLAIIC
FLVYKIVRDRTEVPSVGVAKPSEPELPKIRRDFTVKELRQYDGTQPDGRV
LVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSVVSIDKDEYD
DLSDLSAVEMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVN
NDEQERKNLPKSKTETDDTKQEKESHILQSNVTNKNNAQDQATPSTDC*

BS04766.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
MSBP-PC 248 CG9066-PC 1..248 1..248 1285 100 Plus
MSBP-PB 248 CG9066-PB 1..248 1..248 1285 100 Plus
MSBP-PA 248 CG9066-PA 1..248 1..248 1285 100 Plus
CG16957-PB 192 CG16957-PB 29..183 41..197 305 41.5 Plus
CG16957-PA 192 CG16957-PA 29..183 41..197 305 41.5 Plus