Clone Sequence Records
BS04770.3prime Sequence
947 bp (853 high quality bases) assembled on 2005-12-02
> BS04770.3prime
ATGGTCTAGAAAGCTTTCATCCCAGTTTTCGGCGCCGCGGCAGCTGCAGC
GGCAAGGCAACAACGGAAGCAGACGAGGTCGGATTTGCTGCCATCACCGG
AAGGGCAAGAGCCACTGGAGCTGCGAGTCCGCCGCCGACGTACTGCAGAT
GCTGCACCACCGAGAGCTGTGGCTGCTGCTGCTTGAGCAGCTTGGCGGCA
GCGTGTGCCTCCGCCGCAGCCACCACGACGGGGTGCACCGGTTCGGTGCC
GACTCCTCCGTTGACATGTGGACCGGTGCTTTCGCAATCGTCTTCGTCTG
AGATCAGTGATATGCTGAGGTCGCTGGACAGTTTTAGGGAGATGGGCGTG
GGCGGCGAGGGAGCCACCAAGGGCGCCACTTTGGCGCGCAATGCCGGTGA
CAGTTTCTGCAGCTGCTCCGGCATCAGGTCGTTCGTGTATTCCGGCACTC
CACTAAAAGCCAGGCCTTCGCGTAGTTTGCTCAGCGAGAGTTCGTAAATA
CGGTTTGCGATGACCGTGTGAACGGTCGTCTCGTCCGGCAGCGTGGCTGT
GATGCCTCCGCCCACGTCCACCTCCAGAAAACAGCCCGTTTCATTGCCGC
CCTCTCCGCCTTCGGCGGTGGCGAATCCATTGCTGGCCGCCGTCGACGCT
CGACACGGCTTGGGGTGACCTGACACCCGCGTCAGGCAGTTGGCAGTGGT
GGAGGTGCGCGGCACCAACGAAACAGTTACCTCTTCGATGGTCTCCGACT
GTGTGAGCGGTGCGAGCGGTGGCGGTGAGCGCATGGAGAGCTGGGAGCGC
ACTCTTGCCGTGCTGCTGGGTTCCTGCTCGTTGTGCTCGTCATCGCTGGT
TATCANGATGCTGTCGGTCACTGGGTATGAGTGGGTGGCAGCTCTGCGCG
GCGCCTGCCTTCTGCCCGTTCTATGTGCTCGGTGGCCTGGGGCAGGA
BS04770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3771-PA | 1230 | a6-RA | 300..1230 | 947..17 | 4611 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 652..1582 | 947..17 | 4629 | 99.8 | Minus |
| a6-RB | 2218 | CG3771-RB | 660..1590 | 947..17 | 4629 | 99.8 | Minus |
| a6-RA | 2210 | CG3771-RA | 652..1582 | 947..17 | 4629 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694243..1695173 | 17..947 | 4629 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:25:43 has no hits.
BS04770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:57:04 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:13 Download gff for
BS04770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3771-PA | 301..1230 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:50 Download gff for
BS04770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 653..1585 | 12..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:07 Download gff for
BS04770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 653..1585 | 12..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:07 Download gff for
BS04770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694240..1695172 | 12..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:50 Download gff for
BS04770.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588273..1589205 | 12..946 | 99 | | Plus |
BS04770.5prime Sequence
881 bp (818 high quality bases) assembled on 2005-12-02
> BS04770.5prime
GAAGTTATCAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATAT
CGCCCCGGCTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGG
ATGGAACGCCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGA
CCAAGTGGCTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGC
GGCGCCATGTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTG
TCGGATGACGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCA
CAATCGCCTCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCA
GAAGGCAGGCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGAC
AGCATCCTGATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAG
CACGGCAAGAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCG
CACCGCTCACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTG
CCGCGCACCTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCC
CAAGCCGTGTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCG
AAGGCGGAGAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTG
GGCGGAGGCATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGT
CATCGCAAACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCC
TGGCTTTTAGTGGAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAG
CTGCAGAAACTGTCACCGGCATTGCGCGCCA
BS04770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3771-PA | 1230 | a6-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1217 | 12..881 | 4350 | 100 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1217 | 12..881 | 4350 | 100 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1225 | 14..881 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694608..1695475 | 881..14 | 4340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:25:49 has no hits.
BS04770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:57:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:16 Download gff for
BS04770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3771-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:51:07 Download gff for
BS04770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1216 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:10 Download gff for
BS04770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1216 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:10 Download gff for
BS04770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694609..1695475 | 14..880 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:51:07 Download gff for
BS04770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588642..1589508 | 14..880 | 100 | | Minus |
BS04770.complete Sequence
1262 bp (1262 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635019
> BS04770.complete
GAAGTTATCAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATAT
CGCCCCGGCTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGG
ATGGAACGCCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGA
CCAAGTGGCTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGC
GGCGCCATGTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTG
TCGGATGACGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCA
CAATCGCCTCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCA
GAAGGCAGGCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGAC
AGCATCCTGATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAG
CACGGCAAGAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCG
CACCGCTCACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTG
CCGCGCACCTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCC
CAAGCCGTGTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCG
AAGGCGGAGAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTG
GGCGGAGGCATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGT
CATCGCAAACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCC
TGGCTTTTAGTGGAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAG
CTGCAGAAACTGTCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGC
TCCCTCGCCGCCCACGCCCATCTCCCTAAAACTGTCCAGCGACCTCAGCA
TATCACTGATCTCAGACGAAGACGATTGCGAAAGCACCGGTCCACATGTC
AACGGAGGAGTCGGCACCGAACCGGTGCACCCCGTCGTGGTGGCTGCGGC
GGAGGCACACGCTGCCGCCAAGCTGCTCAAGCAGCAGCAGCCACAGCTCT
CGGTGGTGCAGCATCTGCAGTACGTCGGCGGCGGACTCGCAGCTCCAGTG
GCTCTTGCCCTTCCGGTGATGGCAGCAAATCCGACCTCGTCTGCTTCCGT
TGTTGCCTTGCCGCTGCAGCTGCCGCGGCGCCGAAAACTGGGATGAAAGC
TTTCTAGACCAT
BS04770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 1230 | CG3771-PC | 1..1230 | 17..1246 | 6150 | 100 | Plus |
| a6-RB | 1230 | CG3771-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
| a6-RA | 1230 | CG3771-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1582 | 12..1246 | 6175 | 100 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1582 | 12..1246 | 6175 | 100 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1590 | 14..1246 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694243..1695475 | 1246..14 | 6165 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:03:25 has no hits.
BS04770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:00 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:03 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1585 | 9..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:15 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 353..1581 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:01 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1585 | 9..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:39 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 353..1581 | 17..1245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:39 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694244..1695472 | 17..1245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:15 Download gff for
BS04770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588277..1589505 | 17..1245 | 100 | | Minus |
BS04770.pep Sequence
Translation from 16 to 1245
> BS04770.pep
MNQKHSEPFYISPRLFDNRRLKRRRCRWMERLLEHQRICMARMRDQVALA
SKTDRQLSHLQRRHVASTLQPDVTIDLLSDDDETPSAGQPAAAGHNRLLI
PAPGHRAHRTGRRQAPRRAATHSYPVTDSILITSDDEHNEQEPSSTARVR
SQLSMRSPPPLAPLTQSETIEEVTVSLVPRTSTTANCLTRVSGHPKPCRA
STAASNGFATAEGGEGGNETGCFLEVDVGGGITATLPDETTVHTVIANRI
YELSLSKLREGLAFSGVPEYTNDLMPEQLQKLSPALRAKVAPLVAPSPPT
PISLKLSSDLSISLISDEDDCESTGPHVNGGVGTEPVHPVVVAAAEAHAA
AKLLKQQQPQLSVVQHLQYVGGGLAAPVALALPVMAANPTSSASVVALPL
QLPRRRKLG*
BS04770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-PC | 409 | CG3771-PC | 1..409 | 1..409 | 2092 | 100 | Plus |
| a6-PB | 409 | CG3771-PB | 1..409 | 1..409 | 2092 | 100 | Plus |
| a6-PA | 409 | CG3771-PA | 1..409 | 1..409 | 2092 | 100 | Plus |
