Clone Sequence Records
BS04778.3prime Sequence
824 bp (823 high quality bases) assembled on 2005-12-02
> BS04778.3prime
ATGGTCTAGAAAGCTTTCACGGTGCTGCGGCTCCCTCGCTTGGATATAGA
TTCACCAGGATGGCGTAATAGTGACATCCGGCGGCCAGCACCACAAACAG
ATGCCAAATGGCATGGGCCATGGGTATCGTGCCGTCCGCCTTGAAGAATA
CAATGCCCAGAATGTAGAAGCCGCCGCCGAACTTGAGCTGCATCATACCG
TGGAAGTGGTGGCCAGTGAACACAACGACTAGAGCGGGTCCCAGGCCCAT
CACCAGATAGAAGAACGTCTCCAGACACTTGTAGCGCTCGTGGAAGACCT
GCTGGTAGGCAATTCCTATGCCCGCCATCAGCCAGATGACCCATTCCATG
CAGAAGAGTATGGCCGAATGATCGGTGTTCTCTAGCGTGAGCCAGGGGAA
GTACGATCCGGCGATGAACACATAGATCATCGCCCTGTCGCAGCGATGGA
GCACGTTCTTGAGCCCCTGATACGTCTGCCAGCCGAGACAGGGCCAGGCC
TTGACATTCTTCGGTGGTTTGTGCTCGGCGCAATAGCAGGAGCAGTGGAA
GAAGGTGGACACCGTGAAGAGCATGCACAGGGCTCCGCCGTAGACCCAAG
CAACCAGATACTGGCTGGCGCTGGAGGAGCGTTCAAACAGCTTGATGGCC
GCAAAAACGGCGGGCAGTATCCAAATGCCGTGAGTAATCACATTGGCCAC
CTGCTCGATCTCCGTTGGCTGGTAGGCACAGCCGGGCTTCGCCTTGGCAT
TCTTCCACTTGACATTGCGCAACTGCAGTTTGAGATTGGAATTCGACTTG
ATGATAGACTTCCAGAACTTGCTG
BS04778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 942 | CG4615-RA | 135..942 | 824..17 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 370..1178 | 824..16 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7099373..7099658 | 16..301 | 1430 | 100 | Plus |
X | 23542271 | X | 7099725..7099946 | 297..518 | 1110 | 100 | Plus |
X | 23542271 | X | 7100009..7100201 | 519..711 | 965 | 100 | Plus |
X | 23542271 | X | 7100274..7100388 | 710..824 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:08:18 has no hits.
BS04778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:16 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 135..942 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:31 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 135..942 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:02 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 370..1178 | 16..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:54 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 370..1178 | 16..824 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:54 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099373..7099655 | 16..298 | 100 | <- | Plus |
X | 7099727..7099946 | 299..518 | 100 | <- | Plus |
X | 7100009..7100199 | 519..709 | 100 | <- | Plus |
X | 7100274..7100388 | 710..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:02 Download gff for
BS04778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993406..6993688 | 16..298 | 100 | <- | Plus |
arm_X | 6993760..6993979 | 299..518 | 100 | <- | Plus |
arm_X | 6994042..6994232 | 519..709 | 100 | <- | Plus |
arm_X | 6994307..6994421 | 710..824 | 100 | | Plus |
BS04778.5prime Sequence
880 bp (828 high quality bases) assembled on 2005-11-29
> BS04778.5prime
GAAGTTATCAGTCGACATGACCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTTCAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTT
BS04778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 942 | CG4615-RA | 6..864 | 22..880 | 4245 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 236..1099 | 17..880 | 4275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7100274..7100522 | 265..17 | 1230 | 99.6 | Minus |
X | 23542271 | X | 7099725..7099946 | 678..457 | 1110 | 100 | Minus |
X | 23542271 | X | 7099452..7099658 | 880..674 | 1005 | 99 | Minus |
X | 23542271 | X | 7100009..7100201 | 456..264 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:16:25 has no hits.
BS04778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:17 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:32 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:19 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 230..1099 | 12..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:55 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 230..1099 | 12..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:55 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099452..7099655 | 677..880 | 99 | <- | Minus |
X | 7099727..7099946 | 457..676 | 100 | <- | Minus |
X | 7100009..7100199 | 266..456 | 100 | <- | Minus |
X | 7100274..7100528 | 12..265 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:19 Download gff for
BS04778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993485..6993688 | 677..880 | 99 | <- | Minus |
arm_X | 6993760..6993979 | 457..676 | 100 | <- | Minus |
arm_X | 6994042..6994232 | 266..456 | 100 | <- | Minus |
arm_X | 6994307..6994561 | 12..265 | 98 | | Minus |
BS04778.complete Sequence
974 bp (974 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635020
> BS04778.complete
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATG
TCACTATTACGCCATCCTGGTGAATCTATATCCAAGCGAGGGAGCCGCAG
CACCGTGAAAGCTTTCTAGACCAT
BS04778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 942 | CG4615-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-RA | 1973 | CG4615-RA | 236..1178 | 17..959 | 4715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7099373..7099658 | 959..674 | 1430 | 100 | Minus |
X | 23542271 | X | 7100274..7100522 | 265..17 | 1245 | 100 | Minus |
X | 23542271 | X | 7099725..7099946 | 678..457 | 1110 | 100 | Minus |
X | 23542271 | X | 7100009..7100201 | 456..264 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:49:33 has no hits.
BS04778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:11 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:16 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 227..1175 | 12..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:54 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 236..1176 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:12 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 227..1175 | 12..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:16 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4615-RA | 236..1176 | 17..957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:16 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7099375..7099655 | 677..957 | 100 | <- | Minus |
X | 7099727..7099946 | 457..676 | 100 | <- | Minus |
X | 7100009..7100199 | 266..456 | 100 | <- | Minus |
X | 7100274..7100522 | 17..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:54 Download gff for
BS04778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6993408..6993688 | 677..957 | 100 | <- | Minus |
arm_X | 6993760..6993979 | 457..676 | 100 | <- | Minus |
arm_X | 6994042..6994232 | 266..456 | 100 | <- | Minus |
arm_X | 6994307..6994555 | 17..265 | 100 | | Minus |
BS04778.pep Sequence
Translation from 16 to 957
> BS04778.pep
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAP*
BS04778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4615-PA | 313 | CG4615-PA | 1..313 | 1..313 | 1710 | 100 | Plus |