Clone BS04778 Report

Search the DGRC for BS04778

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG4615-RA
Protein status:BS04778.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04778.3prime Sequence

824 bp (823 high quality bases) assembled on 2005-12-02

> BS04778.3prime
ATGGTCTAGAAAGCTTTCACGGTGCTGCGGCTCCCTCGCTTGGATATAGA
TTCACCAGGATGGCGTAATAGTGACATCCGGCGGCCAGCACCACAAACAG
ATGCCAAATGGCATGGGCCATGGGTATCGTGCCGTCCGCCTTGAAGAATA
CAATGCCCAGAATGTAGAAGCCGCCGCCGAACTTGAGCTGCATCATACCG
TGGAAGTGGTGGCCAGTGAACACAACGACTAGAGCGGGTCCCAGGCCCAT
CACCAGATAGAAGAACGTCTCCAGACACTTGTAGCGCTCGTGGAAGACCT
GCTGGTAGGCAATTCCTATGCCCGCCATCAGCCAGATGACCCATTCCATG
CAGAAGAGTATGGCCGAATGATCGGTGTTCTCTAGCGTGAGCCAGGGGAA
GTACGATCCGGCGATGAACACATAGATCATCGCCCTGTCGCAGCGATGGA
GCACGTTCTTGAGCCCCTGATACGTCTGCCAGCCGAGACAGGGCCAGGCC
TTGACATTCTTCGGTGGTTTGTGCTCGGCGCAATAGCAGGAGCAGTGGAA
GAAGGTGGACACCGTGAAGAGCATGCACAGGGCTCCGCCGTAGACCCAAG
CAACCAGATACTGGCTGGCGCTGGAGGAGCGTTCAAACAGCTTGATGGCC
GCAAAAACGGCGGGCAGTATCCAAATGCCGTGAGTAATCACATTGGCCAC
CTGCTCGATCTCCGTTGGCTGGTAGGCACAGCCGGGCTTCGCCTTGGCAT
TCTTCCACTTGACATTGCGCAACTGCAGTTTGAGATTGGAATTCGACTTG
ATGATAGACTTCCAGAACTTGCTG

BS04778.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 942 CG4615-RA 135..942 824..17 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 370..1178 824..16 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7099373..7099658 16..301 1430 100 Plus
X 23542271 X 7099725..7099946 297..518 1110 100 Plus
X 23542271 X 7100009..7100201 519..711 965 100 Plus
X 23542271 X 7100274..7100388 710..824 575 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:08:18 has no hits.

BS04778.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:16 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 135..942 17..824 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:31 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 135..942 17..824 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:02 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 370..1178 16..824 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:54 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 370..1178 16..824 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:54 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7099373..7099655 16..298 100 <- Plus
X 7099727..7099946 299..518 100 <- Plus
X 7100009..7100199 519..709 100 <- Plus
X 7100274..7100388 710..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:02 Download gff for BS04778.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993406..6993688 16..298 100 <- Plus
arm_X 6993760..6993979 299..518 100 <- Plus
arm_X 6994042..6994232 519..709 100 <- Plus
arm_X 6994307..6994421 710..824 100   Plus

BS04778.5prime Sequence

880 bp (828 high quality bases) assembled on 2005-11-29

> BS04778.5prime
GAAGTTATCAGTCGACATGACCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTTCAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTT

BS04778.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 942 CG4615-RA 6..864 22..880 4245 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 236..1099 17..880 4275 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7100274..7100522 265..17 1230 99.6 Minus
X 23542271 X 7099725..7099946 678..457 1110 100 Minus
X 23542271 X 7099452..7099658 880..674 1005 99 Minus
X 23542271 X 7100009..7100201 456..264 965 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:16:25 has no hits.

BS04778.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:17 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:32 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:44:19 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 230..1099 12..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:55 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 230..1099 12..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:55 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7099452..7099655 677..880 99 <- Minus
X 7099727..7099946 457..676 100 <- Minus
X 7100009..7100199 266..456 100 <- Minus
X 7100274..7100528 12..265 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:44:19 Download gff for BS04778.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993485..6993688 677..880 99 <- Minus
arm_X 6993760..6993979 457..676 100 <- Minus
arm_X 6994042..6994232 266..456 100 <- Minus
arm_X 6994307..6994561 12..265 98   Minus

BS04778.complete Sequence

974 bp (974 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635020

> BS04778.complete
GAAGTTATCAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTG
GAATCCGTACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTC
AGTCTGATGCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTT
CAGCAAGTTCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGC
AGTTGCGCAATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCC
TACCAGCCAACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCAT
TTGGATACTGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCT
CCAGCGCCAGCCAGTATCTGGTTGCTTGGGTCTACGGCGGAGCCCTGTGC
ATGCTCTTCACGGTGTCCACCTTCTTCCACTGCTCCTGCTATTGCGCCGA
GCACAAACCACCGAAGAATGTCAAGGCCTGGCCCTGTCTCGGCTGGCAGA
CGTATCAGGGGCTCAAGAACGTGCTCCATCGCTGCGACAGGGCGATGATC
TATGTGTTCATCGCCGGATCGTACTTCCCCTGGCTCACGCTAGAGAACAC
CGATCATTCGGCCATACTCTTCTGCATGGAATGGGTCATCTGGCTGATGG
CGGGCATAGGAATTGCCTACCAGCAGGTCTTCCACGAGCGCTACAAGTGT
CTGGAGACGTTCTTCTATCTGGTGATGGGCCTGGGACCCGCTCTAGTCGT
TGTGTTCACTGGCCACCACTTCCACGGTATGATGCAGCTCAAGTTCGGCG
GCGGCTTCTACATTCTGGGCATTGTATTCTTCAAGGCGGACGGCACGATA
CCCATGGCCCATGCCATTTGGCATCTGTTTGTGGTGCTGGCCGCCGGATG
TCACTATTACGCCATCCTGGTGAATCTATATCCAAGCGAGGGAGCCGCAG
CACCGTGAAAGCTTTCTAGACCAT

BS04778.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 942 CG4615-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-RA 1973 CG4615-RA 236..1178 17..959 4715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7099373..7099658 959..674 1430 100 Minus
X 23542271 X 7100274..7100522 265..17 1245 100 Minus
X 23542271 X 7099725..7099946 678..457 1110 100 Minus
X 23542271 X 7100009..7100201 456..264 965 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:49:33 has no hits.

BS04778.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:11 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 1..942 17..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:16 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 227..1175 12..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:54 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 236..1176 17..957 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:12 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 227..1175 12..959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:16 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
CG4615-RA 236..1176 17..957 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:16 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
X 7099375..7099655 677..957 100 <- Minus
X 7099727..7099946 457..676 100 <- Minus
X 7100009..7100199 266..456 100 <- Minus
X 7100274..7100522 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:54 Download gff for BS04778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6993408..6993688 677..957 100 <- Minus
arm_X 6993760..6993979 457..676 100 <- Minus
arm_X 6994042..6994232 266..456 100 <- Minus
arm_X 6994307..6994555 17..265 100   Minus

BS04778.pep Sequence

Translation from 16 to 957

> BS04778.pep
MSNSEGSGHESGIRTLNRNANGNGNGDLSLMQDLQHKYAFLENLFSKFWK
SIIKSNSNLKLQLRNVKWKNAKAKPGCAYQPTEIEQVANVITHGIWILPA
VFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYCAEHKPPK
NVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLENTDHSAI
LFCMEWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGH
HFHGMMQLKFGGGFYILGIVFFKADGTIPMAHAIWHLFVVLAAGCHYYAI
LVNLYPSEGAAAP*

BS04778.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4615-PA 313 CG4615-PA 1..313 1..313 1710 100 Plus