Clone BS04779 Report

Search the DGRC for BS04779

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptcasp-RA
Protein status:BS04779.pep: full length peptide match
Sequenced Size:2120

Clone Sequence Records

BS04779.complete Sequence

2120 bp assembled on 2009-12-07

GenBank Submission: KX795733

> BS04779.complete
GAAGTTATCAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTT
TTCAGAGCATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTG
GAGGCCGCCGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCA
CGAGGATGCGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCAC
CGGCCAGGAATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTT
GATGAAATGCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCT
TCAAAACCAGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAA
GATTTCCAACGTCACAATTGCTAGCCCAGCTGACGTCCAGTATCAACCTG
GACCCCGCGTCCAGCCAAAACAACAACCAAAACGTGATCACCTTCAACAT
CCACTTTAACCAGCAGCTCTACCAGCTCCGTTTACCATCGGAGGCCACAG
TTGAACAACTTAAACGCAAAATCTTTGCCGAGACAAGTGTGCCTGTGTGC
AGGCAAGCCATTCGCGGCTGGCCACCCTCCAAAGCCAGCGATGCACAGCA
GCTGGGCACTCGTTTATGCAACCTAGATCTCTCCCCGGAGAATGAACTGA
TCCTGGTGGACCTCACCGAAGACGGTTTCATGGACACCGAACAGGATGAA
GTGACGCAGCGCGTGGACAAGGACTTCACCATTTTCATACAGTTCGAATC
GGACCCACCACTCACTCTTAGCCTGCCAGGACGTATGACAGTGCAAGAGG
TAAAGATGAACGTGTTCGACATCAAGAGCATACCAGTGCGCCACCAGGAG
TGGACCGGCTGGCCCAACGGTTGTGACAATGACACCACTCTGGCGCAATC
TGGCATTGGGCTCTCGCATAGATTCGCTGTTCGCAGCACGGAACGATCAG
CGCCAACAAATTCCAATCAGCACAACGCATTCGATGTGGTGACCGTGGAC
AGTGAGAGCTCGACAGATGAGTTCGAAGATGCCACAGACTTCAACAACGC
CGAGTACATATTTACTGACTCGCCACCCGCTCAGCCCCCCAACAGACACT
TAATACCAAACGATACGGATGATGAGATAAGTGGCTCCACGCAGTTTGTC
GAGAACTACAAGGCGCGTTATGGCGAGCCCTGTCCCGAATTTTTTGTGGG
CAGCCTTGAAAACGCCAAGCAGCTGGCCTGCCTTCGATCCGCCAAGGAGC
GCAAGCTGTTGGCCATTTACTTGCATCACGGCAAGAGCATTCTCAGCAAC
GTTTTCTGTGATCAACTGATGAAACATGAGAGCATTATACAAACTTTCAA
AGAGAAGTTTGTTTTATATGGCTGGGATATGACCTACGAGAGCAACAAGG
ACATGTTTCTCTCCTCGTTGACGGCCTGCATTAGCAGCAACGCCTCTCTG
ACGGCCAGAAACATTAAATTGGACAAGCTGCCAGCCATCATGTTGGTTGG
AAAAAGCCGCCAGCTGGGCAGCAATTGCGAAGTTTTATCTGTGATTCATG
GTAACATTGGTCTGGATGACTTGCTTACGAGGCTGATTGAAACATGCGAA
ATGTTTGAGGAGCAGCTTCAGGTGGAAATACGGCAAGAGGACGAACGCGC
TGCCCGTGATCAGGTGAAGGCAGAGCAGGACATGGCCTATCAGGAAACTT
TGCAAGCCGACATGGCTAAGGATGCGGCAAAGCGCCAGAAGGAGGCTGCA
CAATTGGCCGAGCGAAAACGAATGGAGTCCGAGCGGGCCGAAGAAGATGC
TAGACGCGAGTCCATCAGATTAGTTGCTCAACAATCCCTACCTCAGGAGC
CGTCCGAACAGGAAACGGGGACTTCAAAGATCCGAGTGCGTAAGCCCACT
GGCGATTTTCTGGAGCGCCGTTTTTTCATCAACAACAACCTACAGGATCT
GCTCAACTTTGTGACGGCCAATGGTTTCCTCATCGAGGAGTACAAGCTAA
TCAGCAGCTGGCCGCGTCGCGATCTTACGGCCATCGAGAGTAGCCAAACA
TTGGAGTCGCTCAAGCTGTATCCGCAGGAAACGGTCATCCTGGAGGAGCG
ATGAAAGCTTTCTAGACCAT

BS04779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
casp-RB 2088 CG8400-PB 1..2088 17..2104 10440 100 Plus
casp-RA 2088 CG8400-PA 1..2088 17..2104 10440 100 Plus
casp-RC 2073 CG8400-PC 1..2073 17..2104 10180 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
casp-RB 2557 CG8400-RB 122..2209 17..2104 10440 100 Plus
casp-RA 2557 CG8400-RA 122..2209 17..2104 10440 100 Plus
casp-RC 2542 CG8400-RC 122..2194 17..2104 10180 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16025372..16025648 1826..1550 1385 100 Minus
2R 25286936 2R 16027337..16027572 359..124 1180 100 Minus
2R 25286936 2R 16026339..16026547 1103..895 1045 100 Minus
2R 25286936 2R 16026611..16026812 895..694 1010 100 Minus
2R 25286936 2R 16026866..16027057 694..503 960 100 Minus
2R 25286936 2R 16024976..16025137 2104..1943 810 100 Minus
2R 25286936 2R 16025911..16026069 1406..1248 795 100 Minus
2R 25286936 2R 16025706..16025854 1553..1405 745 100 Minus
2R 25286936 2R 16026135..16026280 1249..1104 730 100 Minus
2R 25286936 2R 16027135..16027278 503..360 720 100 Minus
2R 25286936 2R 16025190..16025310 1946..1826 605 100 Minus
2R 25286936 2R 16027664..16027736 125..53 365 100 Minus
2R 25286936 2R 16027884..16027922 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:26:45 has no hits.

BS04779.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:06 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
casp-RB 122..2208 17..2103 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:22 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
casp-RA 122..2208 17..2103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:35 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
casp-RB 122..2208 17..2103 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:36 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
casp-RA 122..2208 17..2103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:36 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16027884..16027922 17..55 100   Minus
2R 16027665..16027733 56..124 100 <- Minus
2R 16025709..16025854 1405..1550 100 <- Minus
2R 16025913..16026067 1250..1404 100 <- Minus
2R 16026135..16026280 1104..1249 100 <- Minus
2R 16025373..16025647 1551..1825 100 <- Minus
2R 16027337..16027571 125..359 100 <- Minus
2R 16024977..16025134 1946..2103 100 <- Minus
2R 16025191..16025310 1826..1945 100 <- Minus
2R 16026339..16026546 896..1103 100 <- Minus
2R 16026611..16026812 694..895 100 <- Minus
2R 16026867..16027056 504..693 100 <- Minus
2R 16027135..16027278 360..503 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:22 Download gff for BS04779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11912482..11912639 1946..2103 100 <- Minus
arm_2R 11912696..11912815 1826..1945 100 <- Minus
arm_2R 11912878..11913152 1551..1825 100 <- Minus
arm_2R 11913214..11913359 1405..1550 100 <- Minus
arm_2R 11913418..11913572 1250..1404 100 <- Minus
arm_2R 11913640..11913785 1104..1249 100 <- Minus
arm_2R 11913844..11914051 896..1103 100 <- Minus
arm_2R 11914116..11914317 694..895 100 <- Minus
arm_2R 11914372..11914561 504..693 100 <- Minus
arm_2R 11914640..11914783 360..503 100 <- Minus
arm_2R 11914842..11915076 125..359 100 <- Minus
arm_2R 11915170..11915238 56..124 100 <- Minus
arm_2R 11915389..11915427 17..55 100   Minus

BS04779.3prime Sequence

910 bp (844 high quality bases) assembled on 2005-12-02

> BS04779.3prime
ATGGTCTAGAAAGCTTTCATCGCTCCTCCAGGATGACCGTTTCCTGCGGA
TACAGCTTGAGCGACTCCAATGTTTGGCTACTCTCGATGGCCGTAAGATC
GCGACGCGGCCAGCTGCTGATTAGCTTGTACTCCTCGATGAGGAAACCAT
TGGCCGTCACAAAGTTGAGCAGATCCTGTAGGTTGTTGTTGATGAAAAAA
CGGCGCTCCAGAAAATCGCCAGTGGGCTTACGCACTCGGATCTTTGAAGT
CCCCGTTTCCTGTTCGGACGGCTCCTGAGGTAGGGATTGTTGAGCAACTA
ATCTGATGGACTCGCGTCTAGCATCTTCTTCGGCCCGCTCGGACTCCATT
CGTTTTCGCTCGGCCAATTGTGCAGCCTCCTTCTGGCGCTTTGCCGCATC
CTTAGCCATGTCGGCTTGCAAAGTTTCCTGATAGGCCATGTCCTGCTCTG
CCTTCACCTGATCACGGGCAGCGCGTTCGTCCTCTTGCCGTATTTCCACC
TGAAGCTGCTCCTCAAACATTTCGCATGTTTCAATCAGCCTCGTAAGCAA
GTCATCCAGACCAATGTTACCATGAATCACAGATAAAACTTCGCAATTGC
TGCCCAGCTGGCGGCTTTTTCCAACCAACATGATGGCTGGCAGCTTGTCC
AATTTAATGTTTCTGGCCGTCAGAGAGGCGTTGCTGCTAATGCAGGCCGT
CAACGAGGAGAGAAACATGTCCTTGTTGCTCTCGTAGGTCATATCCCAGC
CATATAAAACAAACTTCTCTTTGAAAGTTTGTATAATGCTCTCATGTTTC
ATCAGTTGATCACAGAAAACGTTGCTGAGAATGCTCTTGCCGTGATGCAA
GTAAATGGCCAACAGCTTGCGCTCCTTGGCGGATCGAAAGCAGGCCAGCT
GCTTGGCGTT

BS04779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8400-PA 2088 CG8400-RA 1195..2088 910..17 4445 99.8 Minus
CG8400-PB 2088 CG8400-RB 1195..2088 910..17 4445 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
casp-RC 2542 CG8400-RC 1301..2194 910..17 4455 99.9 Minus
casp-RB 2557 CG8400-RB 1316..2209 910..17 4455 99.9 Minus
casp-RA 2557 CG8400-RA 1316..2209 910..17 4455 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16025372..16025648 295..571 1385 100 Plus
2R 25286936 2R 16024976..16025137 17..178 810 100 Plus
2R 25286936 2R 16025911..16026069 715..873 795 100 Plus
2R 25286936 2R 16025706..16025854 568..716 745 100 Plus
2R 25286936 2R 16025190..16025310 175..295 605 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:12:57 has no hits.

BS04779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:18 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8400-PB 1195..2088 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:34 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8400-PB 1195..2088 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:33:47 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
casp-RA 1316..2209 17..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:59:35 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
casp-RA 1316..2209 17..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:59:35 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16025913..16026067 717..871 100 <- Plus
2R 16024976..16025134 17..175 100 <- Plus
2R 16025191..16025310 176..295 100 <- Plus
2R 16025373..16025647 296..570 100 <- Plus
2R 16025709..16025854 571..716 100 <- Plus
2R 16026135..16026173 872..910 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:33:47 Download gff for BS04779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11912481..11912639 17..175 100 <- Plus
arm_2R 11912696..11912815 176..295 100 <- Plus
arm_2R 11912878..11913152 296..570 100 <- Plus
arm_2R 11913214..11913359 571..716 100 <- Plus
arm_2R 11913418..11913572 717..871 100 <- Plus
arm_2R 11913640..11913678 872..910 97   Plus

BS04779.5prime Sequence

880 bp (813 high quality bases) assembled on 2005-12-02

> BS04779.5prime
GAAGTTATCAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTT
TTCAGAGCATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTG
GAGGCCGCCGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCA
CGAGGATGCGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCAC
CGGCCAGGAATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTT
GATGAAATGCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCT
TCAAAACCAGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAA
GATTTCCAACGTCACAATTGCTAGCCCAGCTGACGTCCAGTATCAACCTG
GACCCCGCGTCCAGCCAAAACAACAACCAAAACGTGATCACCTTCAACAT
CCACTTTAACCAGCAGCTCTACCAGCTCCGTTTACCATCGGAGGCCACAG
TTGAACAACTTAAACGCAAAATCTTTGCCGAGACAAGTGTGCCTGTGTGC
AGGCAAGCCATTCGCGGCTGGCCACCCTCCAAAGCCAGCGATGCACAGCA
GCTGGGCACTCGTTTATGCAACCTAGATCTCTCCCCGGAGAATGAACTGA
TCCTGGTGGACCTCACCGAAGACGGTTTCATGGACACCGAACAGGATGAA
GTGACGCAGCGCGTGGACAAGGACTTCACCATTTTCATACAGTTCGAATC
GGACCCACCACTCACTCTTAGCCTGCCAGGACGTATGACAGTGCAAGAGG
TAAAGATGAACGTGTTCGACATCAAGAGCATACCAGTGCGCCACCAGGAG
TGGACCGGCTGGCCCAACGGTTGTGACAAT

BS04779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8400-PA 2088 CG8400-RA 1..864 17..880 4320 100 Plus
CG8400-PB 2088 CG8400-RB 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
casp-RB 2557 CG8400-RB 122..985 17..880 4320 100 Plus
casp-RA 2557 CG8400-RA 122..985 17..880 4320 100 Plus
casp-RC 2542 CG8400-RC 122..970 17..880 4085 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16027337..16027572 359..124 1180 100 Minus
2R 25286936 2R 16026866..16027057 694..503 960 100 Minus
2R 25286936 2R 16026626..16026812 880..694 935 100 Minus
2R 25286936 2R 16027135..16027278 503..360 720 100 Minus
2R 25286936 2R 16027664..16027736 125..53 365 100 Minus
2R 25286936 2R 16027884..16027922 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 00:17:48 has no hits.

BS04779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:19 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8400-PB 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:35 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8400-PB 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:28 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
casp-RA 118..985 12..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:01 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
casp-RA 118..985 12..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:01 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16026867..16027056 504..693 100 <- Minus
2R 16027135..16027278 360..503 100 <- Minus
2R 16026626..16026812 694..880 100 <- Minus
2R 16027337..16027571 125..359 100 <- Minus
2R 16027665..16027733 56..124 100 <- Minus
2R 16027884..16027926 12..55 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:28 Download gff for BS04779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11914131..11914317 694..880 100 <- Minus
arm_2R 11914372..11914561 504..693 100 <- Minus
arm_2R 11914640..11914783 360..503 100 <- Minus
arm_2R 11914842..11915076 125..359 100 <- Minus
arm_2R 11915170..11915238 56..124 100 <- Minus
arm_2R 11915389..11915431 12..55 95   Minus

BS04779.pep Sequence

Translation from 16 to 2103

> BS04779.pep
MSENKDEALTSFQSITGIDDVGEAFSHLEAADWNLVEALSRVIPHEDAPL
TSPHPILVPEPPARNAVESTNGFRPPGFDEMPGTSNASGFFAAALQNQNQ
NLNLNQPHIQQRFPTSQLLAQLTSSINLDPASSQNNNQNVITFNIHFNQQ
LYQLRLPSEATVEQLKRKIFAETSVPVCRQAIRGWPPSKASDAQQLGTRL
CNLDLSPENELILVDLTEDGFMDTEQDEVTQRVDKDFTIFIQFESDPPLT
LSLPGRMTVQEVKMNVFDIKSIPVRHQEWTGWPNGCDNDTTLAQSGIGLS
HRFAVRSTERSAPTNSNQHNAFDVVTVDSESSTDEFEDATDFNNAEYIFT
DSPPAQPPNRHLIPNDTDDEISGSTQFVENYKARYGEPCPEFFVGSLENA
KQLACLRSAKERKLLAIYLHHGKSILSNVFCDQLMKHESIIQTFKEKFVL
YGWDMTYESNKDMFLSSLTACISSNASLTARNIKLDKLPAIMLVGKSRQL
GSNCEVLSVIHGNIGLDDLLTRLIETCEMFEEQLQVEIRQEDERAARDQV
KAEQDMAYQETLQADMAKDAAKRQKEAAQLAERKRMESERAEEDARRESI
RLVAQQSLPQEPSEQETGTSKIRVRKPTGDFLERRFFINNNLQDLLNFVT
ANGFLIEEYKLISSWPRRDLTAIESSQTLESLKLYPQETVILEER*

BS04779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
casp-PB 695 CG8400-PB 1..695 1..695 3579 100 Plus
casp-PA 695 CG8400-PA 1..695 1..695 3579 100 Plus
casp-PC 690 CG8400-PC 1..690 1..695 3542 99.3 Plus
Faf-PB 464 CG10372-PB 141..423 369..670 194 23.5 Plus
Faf-PA 464 CG10372-PA 141..423 369..670 194 23.5 Plus