Clone BS04787 Report

Search the DGRC for BS04787

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:47
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptZnT41F-RA
Protein status:BS04787.pep: full length peptide match
Sequenced Size:1529

Clone Sequence Records

BS04787.3prime Sequence

834 bp (829 high quality bases) assembled on 2005-12-02

> BS04787.3prime
ATGGTCTAGAAAGCTTCTACTCTGTTGTAGGTTCCAATTGAATGGTTGAA
TGCTTGATGTTATATCTTGGGCTGGATACGAGCGCCGTGGCAGCCTGCAG
TACCTCATTGCCGTCCGCTCGGGAGTCTGTAACGAGATGCACCATCAGCA
CCCTTTGCTGAGAGGTCTGTTGCCACACGTTTAGGTGGTGCAAAGATCTG
ACACCTTCGATGCTGCCCAGCTCCAAGTGCAGAGTGCGCATATTAAGGTT
TTGTGGAACTGCATTCACGATGATGCCCAAAGACTCCCGAAACAGACGCA
AGGTAGTCATTATTACAATAATTGAGAATATGAGAGTACACAGGGGATCA
GCATACTTGGCACCTGGACAAACTTTAATTAGGACGGCGGCCAAAAAAAC
GCCAATGCTCTGCACTAGGTCTCCAATCACATGAATCATAGCAGCACGCA
GGTTCAGGTTTTTATCCTCGTGTGCCAGCTCCATGTTTGAAGTCCCAGTC
AGAGTTGGTTTTTTCCCATTTGTAATAACAATCTTATGCTCGTTTGAATT
AATTTCTTTCCTTATTGAATCCTCCTCATCTGCCGTTGAAGCGCTTTGAC
TTCCAATGGTCGTAAGAAAGTTCGAATTGGAACGTGTTTGTGAAAGACTA
TCGTTTGGCTCATGTCCGTTTCCGTGACTGTGGCTGTGACTATGACTATG
GCTGTGACTGTGGCCATGACCATTCCCGTTCACGAACCAGGATCCATGCA
AAACAAACATCATTACGATATTTATGACTATGCCAATGCCTGAAATCAGC
ATCATCATATCGGCGTTTAATTCAAAGTCTTGGG

BS04787.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 680..1497 834..17 4090 100 Minus
CG11163-PB 1497 CG11163-RB 680..1497 834..17 4090 100 Minus
CG11163-PC 1497 CG11163-RC 680..1497 834..17 4090 100 Minus
CG11163-PD 1497 CG11163-RD 680..1497 834..17 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 981..1798 834..17 4090 100 Minus
ZnT41F-RC 2042 CG11163-RC 1040..1857 834..17 4090 100 Minus
ZnT41F-RB 2461 CG11163-RB 1459..2276 834..17 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5776321..5776591 494..764 1355 100 Plus
2R 25286936 2R 5775260..5775429 198..367 850 100 Plus
2R 25286936 2R 5775730..5775857 368..495 640 100 Plus
2R 25286936 2R 5774961..5775078 17..134 575 99.2 Plus
2R 25286936 2R 5775126..5775199 127..200 370 100 Plus
2R 25286936 2R 5777364..5777433 765..834 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:19:35 has no hits.

BS04787.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:35 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PA 680..1497 17..834 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:57 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 680..1497 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:44 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 1459..2281 11..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:31 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 1459..2281 11..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:31 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5774956..5775070 11..126 97 <- Plus
2R 5775126..5775196 127..197 100 <- Plus
2R 5775260..5775429 198..367 100 <- Plus
2R 5775730..5775856 368..494 100 <- Plus
2R 5776322..5776591 495..764 100 <- Plus
2R 5777364..5777433 765..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:44 Download gff for BS04787.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1662461..1662575 11..126 97 <- Plus
arm_2R 1662631..1662701 127..197 100 <- Plus
arm_2R 1662765..1662934 198..367 100 <- Plus
arm_2R 1663235..1663361 368..494 100 <- Plus
arm_2R 1663827..1664096 495..764 100 <- Plus
arm_2R 1664869..1664938 765..834 100   Plus

BS04787.5prime Sequence

740 bp (657 high quality bases) assembled on 2005-12-02

> BS04787.5prime
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGGTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAG

BS04787.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11163-PA 1497 CG11163-RA 1..724 17..740 3595 99.8 Plus
CG11163-PB 1497 CG11163-RB 1..724 17..740 3595 99.8 Plus
CG11163-PC 1497 CG11163-RC 1..724 17..740 3595 99.8 Plus
CG11163-PD 1497 CG11163-RD 1..724 17..740 3595 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 300..1025 15..740 3615 99.9 Plus
ZnT41F-RC 2042 CG11163-RC 359..1084 15..740 3615 99.9 Plus
ZnT41F-RB 2461 CG11163-RB 778..1503 15..740 3615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5778201..5778496 310..15 1480 100 Minus
2R 25286936 2R 5777712..5777875 611..448 820 100 Minus
2R 25286936 2R 5777989..5778129 448..308 705 100 Minus
2R 25286936 2R 5777389..5777518 740..611 635 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 15:12:18 has no hits.

BS04787.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:36 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PA 1..724 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:58 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-PD 1..724 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:10:41 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 778..1503 15..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:01 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 778..1503 15..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:01 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5777389..5777517 612..740 99 <- Minus
2R 5777712..5777874 449..611 100 <- Minus
2R 5777989..5778126 311..448 100 <- Minus
2R 5778201..5778496 15..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:10:41 Download gff for BS04787.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1664894..1665022 612..740 99 <- Minus
arm_2R 1665217..1665379 449..611 100 <- Minus
arm_2R 1665494..1665631 311..448 100 <- Minus
arm_2R 1665706..1666001 15..310 100   Minus

BS04787.complete Sequence

1529 bp assembled on 2008-08-14

GenBank Submission: FJ635021

> BS04787.complete
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCAT
AGTCATAAATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGA
ACGGGAATGGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCAC
AGTCACGGAAACGGACATGAGCCAAACGATAGTCTTTCACAAACACGTTC
CAATTCGAACTTTCTTACGACCATTGGAAGTCAAAGCGCTTCAACGGCAG
ATGAGGAGGATTCAATAAGGAAAGAAATTAATTCAAACGAGCATAAGATT
GTTATTACAAATGGGAAAAAACCAACTCTGACTGGGACTTCAAACATGGA
GCTGGCACACGAGGATAAAAACCTGAACCTGCGTGCTGCTATGATTCATG
TGATTGGAGACCTAGTGCAGAGCATTGGCGTTTTTTTGGCCGCCGTCCTA
ATTAAAGTTTGTCCAGGTGCCAAGTATGCTGATCCCCTGTGTACTCTCAT
ATTCTCAATTATTGTAATAATGACTACCTTGCGTCTGTTTCGGGAGTCTT
TGGGCATCATCGTGAATGCAGTTCCACAAAACCTTAATATGCGCACTCTG
CACTTGGAGCTGGGCAGCATCGAAGGTGTCAGATCTTTGCACCACCTAAA
CGTGTGGCAACAGACCTCTCAGCAAAGGGTGCTGATGGTGCATCTCGTTA
CAGACTCCCGAGCGGACGGCAATGAGGTACTGCAGGCTGCCACGGCGCTC
GTATCCAGCCCAAGATATAACATCAAGCATTCAACCATTCAATTGGAACC
TACAACAGAGTAGAAGCTTTCTAGACCAT

BS04787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1497 CG11163-PD 1..1497 17..1513 7485 100 Plus
ZnT41F-RC 1497 CG11163-PC 1..1497 17..1513 7485 100 Plus
ZnT41F-RB 1497 CG11163-PB 1..1497 17..1513 7485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-RD 1983 CG11163-RD 300..1798 15..1513 7495 100 Plus
ZnT41F-RC 2042 CG11163-RC 359..1857 15..1513 7495 100 Plus
ZnT41F-RB 2461 CG11163-RB 778..2276 15..1513 7495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5778201..5778496 310..15 1480 100 Minus
2R 25286936 2R 5776321..5776591 1036..766 1355 100 Minus
2R 25286936 2R 5775260..5775429 1332..1163 850 100 Minus
2R 25286936 2R 5777712..5777875 611..448 820 100 Minus
2R 25286936 2R 5777364..5777518 765..611 775 100 Minus
2R 25286936 2R 5777989..5778129 448..308 705 100 Minus
2R 25286936 2R 5775730..5775857 1162..1035 640 100 Minus
2R 25286936 2R 5774961..5775078 1513..1396 575 99.2 Minus
2R 25286936 2R 5775126..5775199 1403..1330 370 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:38 has no hits.

BS04787.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:55 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RC 375..1878 15..1519 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:16 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RB 780..2276 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:17 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11163-RC 377..1873 17..1513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:49 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT41F-RB 780..2276 17..1513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:49 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5777364..5777517 612..765 100 <- Minus
2R 5777712..5777874 449..611 100 <- Minus
2R 5777989..5778126 311..448 100 <- Minus
2R 5774961..5775070 1404..1513 100 <- Minus
2R 5775126..5775196 1333..1403 100 <- Minus
2R 5775260..5775429 1163..1332 100 <- Minus
2R 5775730..5775856 1036..1162 100 <- Minus
2R 5776322..5776591 766..1035 100 <- Minus
2R 5778201..5778494 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:16 Download gff for BS04787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1662466..1662575 1404..1513 100 <- Minus
arm_2R 1662631..1662701 1333..1403 100 <- Minus
arm_2R 1662765..1662934 1163..1332 100 <- Minus
arm_2R 1663235..1663361 1036..1162 100 <- Minus
arm_2R 1663827..1664096 766..1035 100 <- Minus
arm_2R 1664869..1665022 612..765 100 <- Minus
arm_2R 1665217..1665379 449..611 100 <- Minus
arm_2R 1665494..1665631 311..448 100 <- Minus
arm_2R 1665706..1665999 17..310 100   Minus

BS04787.pep Sequence

Translation from 16 to 1512

> BS04787.pep
MPKYQKLDNTLLPNAHDDDSEGGFPGYFDDNHQSLGIQQDPDTRDDRLSD
YQDRYYSVNNNSVNREVVTIGSNVVRVPEEQTWEVPLLGDCGDSARNQSS
ETEFDMQRECCNHQPGFRANSKSKSAQEAKYKIMLAVALCCVFMIIEFLG
GYVAGSLAIMTDAAHLASDCISFVIGLVAIWIGGRPPDERMSFGYKRFEV
IGALASILGIWFVTTLLVVVAIERIFSQDFELNADMMMLISGIGIVINIV
MMFVLHGSWFVNGNGHGHSHSHSHSHSHSHGNGHEPNDSLSQTRSNSNFL
TTIGSQSASTADEEDSIRKEINSNEHKIVITNGKKPTLTGTSNMELAHED
KNLNLRAAMIHVIGDLVQSIGVFLAAVLIKVCPGAKYADPLCTLIFSIIV
IMTTLRLFRESLGIIVNAVPQNLNMRTLHLELGSIEGVRSLHHLNVWQQT
SQQRVLMVHLVTDSRADGNEVLQAATALVSSPRYNIKHSTIQLEPTTE*

BS04787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT41F-PD 498 CG11163-PD 1..498 1..498 2584 100 Plus
ZnT41F-PC 498 CG11163-PC 1..498 1..498 2584 100 Plus
ZnT41F-PB 498 CG11163-PB 1..498 1..498 2584 100 Plus
ZnT41F-PA 498 CG11163-PA 1..498 1..498 2584 100 Plus
ZnT35C-PB 440 CG3994-PB 54..426 128..497 608 36.6 Plus