Clone Sequence Records
BS04787.3prime Sequence
834 bp (829 high quality bases) assembled on 2005-12-02
> BS04787.3prime
ATGGTCTAGAAAGCTTCTACTCTGTTGTAGGTTCCAATTGAATGGTTGAA
TGCTTGATGTTATATCTTGGGCTGGATACGAGCGCCGTGGCAGCCTGCAG
TACCTCATTGCCGTCCGCTCGGGAGTCTGTAACGAGATGCACCATCAGCA
CCCTTTGCTGAGAGGTCTGTTGCCACACGTTTAGGTGGTGCAAAGATCTG
ACACCTTCGATGCTGCCCAGCTCCAAGTGCAGAGTGCGCATATTAAGGTT
TTGTGGAACTGCATTCACGATGATGCCCAAAGACTCCCGAAACAGACGCA
AGGTAGTCATTATTACAATAATTGAGAATATGAGAGTACACAGGGGATCA
GCATACTTGGCACCTGGACAAACTTTAATTAGGACGGCGGCCAAAAAAAC
GCCAATGCTCTGCACTAGGTCTCCAATCACATGAATCATAGCAGCACGCA
GGTTCAGGTTTTTATCCTCGTGTGCCAGCTCCATGTTTGAAGTCCCAGTC
AGAGTTGGTTTTTTCCCATTTGTAATAACAATCTTATGCTCGTTTGAATT
AATTTCTTTCCTTATTGAATCCTCCTCATCTGCCGTTGAAGCGCTTTGAC
TTCCAATGGTCGTAAGAAAGTTCGAATTGGAACGTGTTTGTGAAAGACTA
TCGTTTGGCTCATGTCCGTTTCCGTGACTGTGGCTGTGACTATGACTATG
GCTGTGACTGTGGCCATGACCATTCCCGTTCACGAACCAGGATCCATGCA
AAACAAACATCATTACGATATTTATGACTATGCCAATGCCTGAAATCAGC
ATCATCATATCGGCGTTTAATTCAAAGTCTTGGG
BS04787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11163-PA | 1497 | CG11163-RA | 680..1497 | 834..17 | 4090 | 100 | Minus |
CG11163-PB | 1497 | CG11163-RB | 680..1497 | 834..17 | 4090 | 100 | Minus |
CG11163-PC | 1497 | CG11163-RC | 680..1497 | 834..17 | 4090 | 100 | Minus |
CG11163-PD | 1497 | CG11163-RD | 680..1497 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1983 | CG11163-RD | 981..1798 | 834..17 | 4090 | 100 | Minus |
ZnT41F-RC | 2042 | CG11163-RC | 1040..1857 | 834..17 | 4090 | 100 | Minus |
ZnT41F-RB | 2461 | CG11163-RB | 1459..2276 | 834..17 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5776321..5776591 | 494..764 | 1355 | 100 | Plus |
2R | 25286936 | 2R | 5775260..5775429 | 198..367 | 850 | 100 | Plus |
2R | 25286936 | 2R | 5775730..5775857 | 368..495 | 640 | 100 | Plus |
2R | 25286936 | 2R | 5774961..5775078 | 17..134 | 575 | 99.2 | Plus |
2R | 25286936 | 2R | 5775126..5775199 | 127..200 | 370 | 100 | Plus |
2R | 25286936 | 2R | 5777364..5777433 | 765..834 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:19:35 has no hits.
BS04787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:35 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PA | 680..1497 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:57 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PD | 680..1497 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:44 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RB | 1459..2281 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:31 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT41F-RB | 1459..2281 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:31 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5774956..5775070 | 11..126 | 97 | <- | Plus |
2R | 5775126..5775196 | 127..197 | 100 | <- | Plus |
2R | 5775260..5775429 | 198..367 | 100 | <- | Plus |
2R | 5775730..5775856 | 368..494 | 100 | <- | Plus |
2R | 5776322..5776591 | 495..764 | 100 | <- | Plus |
2R | 5777364..5777433 | 765..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:44 Download gff for
BS04787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1662461..1662575 | 11..126 | 97 | <- | Plus |
arm_2R | 1662631..1662701 | 127..197 | 100 | <- | Plus |
arm_2R | 1662765..1662934 | 198..367 | 100 | <- | Plus |
arm_2R | 1663235..1663361 | 368..494 | 100 | <- | Plus |
arm_2R | 1663827..1664096 | 495..764 | 100 | <- | Plus |
arm_2R | 1664869..1664938 | 765..834 | 100 | | Plus |
BS04787.5prime Sequence
740 bp (657 high quality bases) assembled on 2005-12-02
> BS04787.5prime
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGGTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAG
BS04787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11163-PA | 1497 | CG11163-RA | 1..724 | 17..740 | 3595 | 99.8 | Plus |
CG11163-PB | 1497 | CG11163-RB | 1..724 | 17..740 | 3595 | 99.8 | Plus |
CG11163-PC | 1497 | CG11163-RC | 1..724 | 17..740 | 3595 | 99.8 | Plus |
CG11163-PD | 1497 | CG11163-RD | 1..724 | 17..740 | 3595 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1983 | CG11163-RD | 300..1025 | 15..740 | 3615 | 99.9 | Plus |
ZnT41F-RC | 2042 | CG11163-RC | 359..1084 | 15..740 | 3615 | 99.9 | Plus |
ZnT41F-RB | 2461 | CG11163-RB | 778..1503 | 15..740 | 3615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5778201..5778496 | 310..15 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 5777712..5777875 | 611..448 | 820 | 100 | Minus |
2R | 25286936 | 2R | 5777989..5778129 | 448..308 | 705 | 100 | Minus |
2R | 25286936 | 2R | 5777389..5777518 | 740..611 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:12:18 has no hits.
BS04787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:36 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PA | 1..724 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:21:58 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-PD | 1..724 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:10:41 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RB | 778..1503 | 15..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:01 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT41F-RB | 778..1503 | 15..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:01 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5777389..5777517 | 612..740 | 99 | <- | Minus |
2R | 5777712..5777874 | 449..611 | 100 | <- | Minus |
2R | 5777989..5778126 | 311..448 | 100 | <- | Minus |
2R | 5778201..5778496 | 15..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:10:41 Download gff for
BS04787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1664894..1665022 | 612..740 | 99 | <- | Minus |
arm_2R | 1665217..1665379 | 449..611 | 100 | <- | Minus |
arm_2R | 1665494..1665631 | 311..448 | 100 | <- | Minus |
arm_2R | 1665706..1666001 | 15..310 | 100 | | Minus |
BS04787.complete Sequence
1529 bp assembled on 2008-08-14
GenBank Submission: FJ635021
> BS04787.complete
GAAGTTATCAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGT
TGCCCAACGCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTT
GATGATAATCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGA
TGATCGACTGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATA
GTGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCA
GAGGAGCAAACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGC
GAGAAACCAGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCA
ATCATCAACCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAG
GCCAAGTATAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGAT
CATTGAATTTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGG
ATGCCGCCCATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTC
GCCATATGGATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTA
CAAACGCTTTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGT
TCGTAACTACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAA
GACTTTGAATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCAT
AGTCATAAATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGA
ACGGGAATGGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCAC
AGTCACGGAAACGGACATGAGCCAAACGATAGTCTTTCACAAACACGTTC
CAATTCGAACTTTCTTACGACCATTGGAAGTCAAAGCGCTTCAACGGCAG
ATGAGGAGGATTCAATAAGGAAAGAAATTAATTCAAACGAGCATAAGATT
GTTATTACAAATGGGAAAAAACCAACTCTGACTGGGACTTCAAACATGGA
GCTGGCACACGAGGATAAAAACCTGAACCTGCGTGCTGCTATGATTCATG
TGATTGGAGACCTAGTGCAGAGCATTGGCGTTTTTTTGGCCGCCGTCCTA
ATTAAAGTTTGTCCAGGTGCCAAGTATGCTGATCCCCTGTGTACTCTCAT
ATTCTCAATTATTGTAATAATGACTACCTTGCGTCTGTTTCGGGAGTCTT
TGGGCATCATCGTGAATGCAGTTCCACAAAACCTTAATATGCGCACTCTG
CACTTGGAGCTGGGCAGCATCGAAGGTGTCAGATCTTTGCACCACCTAAA
CGTGTGGCAACAGACCTCTCAGCAAAGGGTGCTGATGGTGCATCTCGTTA
CAGACTCCCGAGCGGACGGCAATGAGGTACTGCAGGCTGCCACGGCGCTC
GTATCCAGCCCAAGATATAACATCAAGCATTCAACCATTCAATTGGAACC
TACAACAGAGTAGAAGCTTTCTAGACCAT
BS04787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1497 | CG11163-PD | 1..1497 | 17..1513 | 7485 | 100 | Plus |
ZnT41F-RC | 1497 | CG11163-PC | 1..1497 | 17..1513 | 7485 | 100 | Plus |
ZnT41F-RB | 1497 | CG11163-PB | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-RD | 1983 | CG11163-RD | 300..1798 | 15..1513 | 7495 | 100 | Plus |
ZnT41F-RC | 2042 | CG11163-RC | 359..1857 | 15..1513 | 7495 | 100 | Plus |
ZnT41F-RB | 2461 | CG11163-RB | 778..2276 | 15..1513 | 7495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5778201..5778496 | 310..15 | 1480 | 100 | Minus |
2R | 25286936 | 2R | 5776321..5776591 | 1036..766 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 5775260..5775429 | 1332..1163 | 850 | 100 | Minus |
2R | 25286936 | 2R | 5777712..5777875 | 611..448 | 820 | 100 | Minus |
2R | 25286936 | 2R | 5777364..5777518 | 765..611 | 775 | 100 | Minus |
2R | 25286936 | 2R | 5777989..5778129 | 448..308 | 705 | 100 | Minus |
2R | 25286936 | 2R | 5775730..5775857 | 1162..1035 | 640 | 100 | Minus |
2R | 25286936 | 2R | 5774961..5775078 | 1513..1396 | 575 | 99.2 | Minus |
2R | 25286936 | 2R | 5775126..5775199 | 1403..1330 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:38 has no hits.
BS04787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:55 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RC | 375..1878 | 15..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:16 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RB | 780..2276 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:17 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11163-RC | 377..1873 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:49 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT41F-RB | 780..2276 | 17..1513 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:49 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5777364..5777517 | 612..765 | 100 | <- | Minus |
2R | 5777712..5777874 | 449..611 | 100 | <- | Minus |
2R | 5777989..5778126 | 311..448 | 100 | <- | Minus |
2R | 5774961..5775070 | 1404..1513 | 100 | <- | Minus |
2R | 5775126..5775196 | 1333..1403 | 100 | <- | Minus |
2R | 5775260..5775429 | 1163..1332 | 100 | <- | Minus |
2R | 5775730..5775856 | 1036..1162 | 100 | <- | Minus |
2R | 5776322..5776591 | 766..1035 | 100 | <- | Minus |
2R | 5778201..5778494 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:16 Download gff for
BS04787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1662466..1662575 | 1404..1513 | 100 | <- | Minus |
arm_2R | 1662631..1662701 | 1333..1403 | 100 | <- | Minus |
arm_2R | 1662765..1662934 | 1163..1332 | 100 | <- | Minus |
arm_2R | 1663235..1663361 | 1036..1162 | 100 | <- | Minus |
arm_2R | 1663827..1664096 | 766..1035 | 100 | <- | Minus |
arm_2R | 1664869..1665022 | 612..765 | 100 | <- | Minus |
arm_2R | 1665217..1665379 | 449..611 | 100 | <- | Minus |
arm_2R | 1665494..1665631 | 311..448 | 100 | <- | Minus |
arm_2R | 1665706..1665999 | 17..310 | 100 | | Minus |
BS04787.pep Sequence
Translation from 16 to 1512
> BS04787.pep
MPKYQKLDNTLLPNAHDDDSEGGFPGYFDDNHQSLGIQQDPDTRDDRLSD
YQDRYYSVNNNSVNREVVTIGSNVVRVPEEQTWEVPLLGDCGDSARNQSS
ETEFDMQRECCNHQPGFRANSKSKSAQEAKYKIMLAVALCCVFMIIEFLG
GYVAGSLAIMTDAAHLASDCISFVIGLVAIWIGGRPPDERMSFGYKRFEV
IGALASILGIWFVTTLLVVVAIERIFSQDFELNADMMMLISGIGIVINIV
MMFVLHGSWFVNGNGHGHSHSHSHSHSHSHGNGHEPNDSLSQTRSNSNFL
TTIGSQSASTADEEDSIRKEINSNEHKIVITNGKKPTLTGTSNMELAHED
KNLNLRAAMIHVIGDLVQSIGVFLAAVLIKVCPGAKYADPLCTLIFSIIV
IMTTLRLFRESLGIIVNAVPQNLNMRTLHLELGSIEGVRSLHHLNVWQQT
SQQRVLMVHLVTDSRADGNEVLQAATALVSSPRYNIKHSTIQLEPTTE*
BS04787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT41F-PD | 498 | CG11163-PD | 1..498 | 1..498 | 2584 | 100 | Plus |
ZnT41F-PC | 498 | CG11163-PC | 1..498 | 1..498 | 2584 | 100 | Plus |
ZnT41F-PB | 498 | CG11163-PB | 1..498 | 1..498 | 2584 | 100 | Plus |
ZnT41F-PA | 498 | CG11163-PA | 1..498 | 1..498 | 2584 | 100 | Plus |
ZnT35C-PB | 440 | CG3994-PB | 54..426 | 128..497 | 608 | 36.6 | Plus |