Clone Sequence Records
BS04809.3prime Sequence
880 bp (766 high quality bases) assembled on 2005-12-02
> BS04809.3prime
ATGGTCTAGAAAGCTTCTACTGCTGCATGTGTCGGAAGGAGTCCTCCGAC
TCGCCGCCATTGCAATCGCTTTCCATCGGCACTGGCTGTGCCTGTTCACT
GGCCTGATCCATGGGCCTGGGTGAGCTGCTGGCATTGGAGGCGCCTGCCT
GCTGGTCATCGTGCTTAGGGGACTGCCCCGCTGGCGAAGCGGCTACCTGG
TGTTCGTTGTATCGTATTAACTTGATGGTCGTCAGGCCGTCAGCGTTGCG
AATGAGTGGATAACAGTCCTCGTTGCTGGTAGCAGTGCTCTTGCTGCTCA
CACTGAGGTCCGTGGGCTTCAGATCCTCGCCAGCGCTTTCCGAACCCGAT
CCCGAGCCATTCTCCAGCTTGAGGGGATGGAACTGGAACTTGTCGGGTCC
TCCAACAGCGGATGGTGTGTTTAGGGCAGGGGAATTGGGTGGCGGACCAG
CTGCCGCCGCCGAAAGGTAGTGGAAGGCTCCATTGATGGCGTGCATGAAG
AGCGGCGATGTGGGTGGTGGACCATAGGCCGCAGCAGCCGCTGCTGCTAC
CGCTGCAACGGCGGGCAGGCTCATGGGACCATTACGCGAGGCGGGCCGCT
GTGGTGATTGTTGTTGCTGCTGGGACTGCTGCTGGGGATTCCAGTTTTGG
CCAGCCGGACTTCCAGGTGCCTGACTGCTACCCTGTGGCATTGATGGACT
GCCGCCATTGCCATTCGCCGGTGTCGATTGACGCAAAAGCGATATATTCT
TGATGTTCTTCAGTTCCGTGGGATTGCGCAGAAACTGATAGCAATGTCGC
TCGCCCTGCACTTTGCGCAGTATGTTTACCCTGTAGTAATAACGCAGGGC
ACGCGACATCTTGTCGTAATTCATGGACAG
BS04809.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3166-PB | 2199 | aop-RB | 1336..2199 | 880..17 | 4320 | 100 | Minus |
| CG3166-PA | 2199 | aop-RA | 1336..2199 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-RE | 3936 | CG3166-RE | 2335..3198 | 880..17 | 4320 | 100 | Minus |
| aop-RD | 4181 | CG3166-RD | 1945..2808 | 880..17 | 4320 | 100 | Minus |
| aop-RC | 4936 | CG3166-RC | 2392..3255 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2158468..2159090 | 258..880 | 3115 | 100 | Plus |
| 2L | 23513712 | 2L | 2158165..2158405 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 02:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 116..175 | 682..624 | 117 | 68.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1163 | 649..598 | 116 | 69.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6899 | 649..507 | 115 | 56.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6911 | 649..595 | 113 | 67.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1006 | 634..609 | 112 | 92.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 634..595 | 110 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2439 | 634..595 | 110 | 75 | Minus |
BS04809.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:57 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-PA | 1336..2199 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:26 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3166-PA | 1336..2199 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:32 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 2392..3258 | 14..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:42 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 2392..3258 | 14..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:42 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2158162..2158405 | 14..257 | 99 | <- | Plus |
| 2L | 2158468..2159090 | 258..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:32 Download gff for
BS04809.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2158162..2158405 | 14..257 | 99 | <- | Plus |
| arm_2L | 2158468..2159090 | 258..880 | 100 | | Plus |
BS04809.5prime Sequence
941 bp (756 high quality bases) assembled on 2005-12-02
> BS04809.5prime
GAAGTTATCAGTCGACATGTCCAAAATGAAAATGCTCCCAGTACAGTTAT
CATTGAACTCGCTGAATCCCGGCATCTGGAGCGATGTGCTGTGGCGCTGT
CCCCCAGCGCCGTCCAGCCAGCTGGCGGAGCTTAAGACGCAACTGCCCCC
ATCCCTGCCTTCCGATCCGCGCCTCTGGAGCCGCGAGGATGTGCTTGTCT
TCCTGCGGTTCTGCGTCCGCGAATTCGATCTCCCCAAACTTGACTTTGAT
CTCTTCCAAATGAACGGCAAGGCGCTGTGCTTGCTGACGCGGGCGGACTT
TGGTCACCGGTGTCCTGGGGCAGGAGATGTGCTCCACAATGTGCTGCAGA
TGTTGATCATAGAGTCCCACATGATGCAGTGGCACCTGCCTAATAGTCCA
GTGACGCCCACCAGTCGTTATCCCCTGTCGCCGCACAGCCATCCGCCGAC
GCCCACGTGGCCACCGCTGAATGCTCCTCCCGAGAACAGTCCCTTCCACA
GTTCTGCTCACAGTCTGGCAGGCCACCATTTTATGGCGCCTAACTCGGTT
ACGCTGAGTCCTCCGCCCTCGGTGGATTCCCAGGCGAGTAGTCCTCCCCA
GGCACCTTACCAAAATGGAGGAGCCACTGGAGCAGCACCAGGATCAGCAG
GAGGATCAGCACCAGCTGCAGGAGGAGCCACAAACACCAGCAATCCCACG
TCGTCGAGTGCCAGCAGCACCGGCAGCAATGGCTCCCAGCCGAACATTAT
GCCCATGAAGGGTATTAGCAGTGCCAGCAGTAATCACTCTGATTCCGAGG
AGGAGTACTCTGAGACCAGTGGTGGAGTGAGCAAGATGCCACCAGCACCA
CTGTCCTACAGCACGGCCAGTCCCGCAGGAACACCCATACTGAAAGATAT
TAAGCCGAATTGGACGCAACAGCTCACGAATAGTTTTGTGA
BS04809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3166-PB | 2199 | aop-RB | 1..925 | 17..941 | 4575 | 99.7 | Plus |
| CG3166-PA | 2199 | aop-RA | 1..925 | 17..941 | 4575 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-RE | 3936 | CG3166-RE | 999..1924 | 16..941 | 4600 | 99.8 | Plus |
| aop-RD | 4181 | CG3166-RD | 609..1534 | 16..941 | 4600 | 99.8 | Plus |
| aop-RC | 4936 | CG3166-RC | 1056..1981 | 16..941 | 4600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2159567..2160492 | 941..16 | 4600 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:55:39 has no hits.
BS04809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:58 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:28 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3166-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:43:11 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1056..1980 | 16..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:28 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1056..1980 | 16..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:28 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2159568..2160492 | 16..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:43:11 Download gff for
BS04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2159568..2160492 | 16..940 | 99 | | Minus |
BS04809.complete Sequence
2231 bp assembled on 2008-08-15
GenBank Submission: KX794363
> BS04809.complete
GAAGTTATCAGTCGACATGTCCAAAATGAAAATGCTCCCAGTACAGTTAT
CATTGAACTCGCTGAATCCCGGCATCTGGAGCGATGTGCTGTGGCGCTGT
CCCCCAGCGCCGTCCAGCCAGCTGGCGGAGCTTAAGACGCAACTGCCCCC
ATCCCTGCCTTCCGATCCGCGCCTCTGGAGCCGCGAGGATGTGCTTGTCT
TCCTGCGGTTCTGCGTCCGCGAATTCGATCTCCCCAAACTTGACTTTGAT
CTCTTCCAAATGAACGGCAAGGCGCTGTGCTTGCTGACGCGGGCGGACTT
TGGTCACCGGTGTCCTGGGGCAGGAGATGTGCTCCACAATGTGCTGCAGA
TGTTGATCATAGAGTCCCACATGATGCAGTGGCACCTGCCTAATAGTCCA
GTGACGCCCACCAGTCGTTATCCCCTGTCGCCGCACAGCCATCCGCCGAC
GCCCACGTGGCCACCGCTGAATGCTCCTCCCGAGAACAGTCCCTTCCACA
GTTCTGCTCACAGTCTGGCAGGCCACCATTTTATGGCGCCTAACTCGGTT
ACGCTGAGTCCTCCGCCCTCGGTGGATTCCCAGGCGAGTAGTCCTCCCCA
GGCACCTTACCAAAATGGAGGAGCCACTGGAGCAGCACCAGGATCAGCAG
GAGGATCAGCACCAGCTGCAGGAGGAGCCACAAACACCAGCAATCCCACG
TCGTCGAGTGCCAGCAGCACCGGCAGCAATGGCTCCCAGCCGAACATTAT
GCCCATGAAGGGTATTAGCAGTGCCAGCAGTAATCACTCTGATTCCGAGG
AGGAGTACTCTGAGACCAGTGGTGGAGTGAGCAAGATGCCACCAGCACCA
CTGTCCTACAGCACGGCCAGTCCGCCAGGAACACCCATACTGAAAGATAT
TAAGCCGAATTGGACGCAACAGCTCACGAATAGTTTTGTGAACTCATGGT
CCCAGCAGCAGCAACAGCAGCAGCAGCAACAAGCTGCTGCAGTGGCCGCA
GTAGCTGCTCAGGCGCAGCAGCACCAGTTGCAGCAGCAGCAGCAGCAACA
ACAATTGCCCCAGAAGCTGACCCTGGATAATACTGCTGGTCCAGTTGTGA
CCCCTGCTGGAGGATCCATCTCCGCACCTACCACGCCCAGTTATATGTAC
AAAGCAAAGAGGGAGTTCTTCCCCGAGAATTCTGAGCCCAATACAAATGG
CCGCCTGTTGTGGGACTTCTTGCAACAGCTGCTGAACGATCGCAACCAGA
AGTACAGCGATCTGATAGCCTGGAAATGCCGCGATACGGGAGTCTTCAAG
ATCGTCGACCCCGCCGGACTGGCAAAGTTGTGGGGCATCCAGAAGAACCA
TCTGTCCATGAATTACGACAAGATGTCGCGTGCCCTGCGTTATTACTACA
GGGTAAACATACTGCGCAAAGTGCAGGGCGAGCGACATTGCTATCAGTTT
CTGCGCAATCCCACGGAACTGAAGAACATCAAGAATATATCGCTTTTGCG
TCAATCGACACCGGCGAATGGCAATGGCGGCAGTCCATCAATGCCACAGG
GTAGCAGTCAGGCACCTGGAAGTCCGGCTGGCCAAAACTGGAATCCCCAG
CAGCAGTCCCAGCAGCAACAACAATCACCACAGCGGCCCGCCTCGCGTAA
TGGTCCCATGAGCCTGCCCGCCGTTGCAGCGGTAGCAGCAGCGGCTGCTG
CGGCCTATGGTCCACCACCCACATCGCCGCTCTTCATGCACGCCATCAAT
GGAGCCTTCCACTACCTTTCGGCGGCGGCAGCTGGTCCGCCACCCAATTC
CCCTGCCCTAAACACACCATCCGCTGTTGGAGGACCCGACAAGTTCCAGT
TCCATCCCCTCAAGCTGGAGAATGGCTCGGGATCGGGTTCGGAAAGCGCT
GGCGAGGATCTGAAGCCCACGGACCTCAGTGTGAGCAGCAAGAGCACTGC
TACCAGCAACGAGGACTGTTATCCACTCATTCGCAACGCTGACGGCCTGA
CGACCATCAAGTTAATACGATACAACGAACACCAGGTAGCCGCTTCGCCA
GCGGGGCAGTCCCCTAAGCACGATGACCAGCAGGCAGGCGCCTCCAATGC
CAGCAGCTCACCCAGGCCCATGGATCAGGCCAGTGAACAGGCACAGCCAG
TGCCGATGGAAAGCGATTGCAATGGCGGCGAGTCGGAGGACTCCTTCCGA
CACATGCAGCAGTAGAAGCTTTCTAGACCAT
BS04809.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-RE | 2199 | CG3166-PE | 1..2199 | 17..2215 | 10995 | 100 | Plus |
| aop-RD | 2199 | CG3166-PD | 1..2199 | 17..2215 | 10995 | 100 | Plus |
| aop-RC | 2199 | CG3166-PC | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-RE | 3936 | CG3166-RE | 999..3198 | 16..2215 | 11000 | 100 | Plus |
| aop-RD | 4181 | CG3166-RD | 609..2808 | 16..2215 | 11000 | 100 | Plus |
| aop-RC | 4936 | CG3166-RC | 1056..3255 | 16..2215 | 11000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2159312..2160492 | 1196..16 | 5905 | 100 | Minus |
| 2L | 23513712 | 2L | 2158468..2159245 | 1974..1197 | 3890 | 100 | Minus |
| 2L | 23513712 | 2L | 2158165..2158405 | 2215..1975 | 1205 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1112..1163 | 1583..1634 | 116 | 69.2 | Plus |
BS04809.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:10 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RA | 381..2583 | 16..2218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:18 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1057..3255 | 17..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:02 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RA | 382..2580 | 17..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:39 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1057..3255 | 17..2215 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:39 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2158165..2158405 | 1975..2215 | 100 | <- | Minus |
| 2L | 2158468..2159245 | 1197..1974 | 100 | <- | Minus |
| 2L | 2159312..2160491 | 17..1196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:18 Download gff for
BS04809.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2158165..2158405 | 1975..2215 | 100 | <- | Minus |
| arm_2L | 2158468..2159245 | 1197..1974 | 100 | <- | Minus |
| arm_2L | 2159312..2160491 | 17..1196 | 100 | | Minus |
BS04809.pep Sequence
Translation from 16 to 2214
> BS04809.pep
MSKMKMLPVQLSLNSLNPGIWSDVLWRCPPAPSSQLAELKTQLPPSLPSD
PRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKALCLLTRADFGHRCP
GAGDVLHNVLQMLIIESHMMQWHLPNSPVTPTSRYPLSPHSHPPTPTWPP
LNAPPENSPFHSSAHSLAGHHFMAPNSVTLSPPPSVDSQASSPPQAPYQN
GGATGAAPGSAGGSAPAAGGATNTSNPTSSSASSTGSNGSQPNIMPMKGI
SSASSNHSDSEEEYSETSGGVSKMPPAPLSYSTASPPGTPILKDIKPNWT
QQLTNSFVNSWSQQQQQQQQQQAAAVAAVAAQAQQHQLQQQQQQQQLPQK
LTLDNTAGPVVTPAGGSISAPTTPSYMYKAKREFFPENSEPNTNGRLLWD
FLQQLLNDRNQKYSDLIAWKCRDTGVFKIVDPAGLAKLWGIQKNHLSMNY
DKMSRALRYYYRVNILRKVQGERHCYQFLRNPTELKNIKNISLLRQSTPA
NGNGGSPSMPQGSSQAPGSPAGQNWNPQQQSQQQQQSPQRPASRNGPMSL
PAVAAVAAAAAAAYGPPPTSPLFMHAINGAFHYLSAAAAGPPPNSPALNT
PSAVGGPDKFQFHPLKLENGSGSGSESAGEDLKPTDLSVSSKSTATSNED
CYPLIRNADGLTTIKLIRYNEHQVAASPAGQSPKHDDQQAGASNASSSPR
PMDQASEQAQPVPMESDCNGGESEDSFRHMQQ*
BS04809.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-PE | 732 | CG3166-PE | 1..732 | 1..732 | 3886 | 100 | Plus |
| aop-PD | 732 | CG3166-PD | 1..732 | 1..732 | 3886 | 100 | Plus |
| aop-PC | 732 | CG3166-PC | 1..732 | 1..732 | 3886 | 100 | Plus |
| aop-PA | 732 | CG3166-PA | 1..732 | 1..732 | 3886 | 100 | Plus |
| aop-PB | 732 | CG3166-PB | 1..732 | 1..732 | 3886 | 100 | Plus |
