Clone BS04814 Report

Search the DGRC for BS04814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptabd-A-RA
Protein status:BS04814.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04814.3prime Sequence

944 bp (817 high quality bases) assembled on 2005-12-02

> BS04814.3prime
ATGGTCTAGAAAGCTTTTAGGAGTTGACTTTGCTGACCGCCTTTAGCAGG
TCGTGATTGCTCTTGTCCAGGGCGCTCATCATGCCCAGATTGCCGCCCAA
GCCGCCACCGATGCCCGGCCCGATGCCGCCCACTCCGACGCCCACGCCCA
TGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACCGAGTGGTGCAAG
TGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTG
CTGCTGTTGGTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGCTGTT
GCTGCTGCTGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCC
TGGGCCTTCATTTTCTCCTGCTCCTCTCGATCGCGTCGCGCCTGTTCATT
TATTTCCTTGACGGCTCGTAACTCCTTCTTCAGCTTCATGCGACGGTTCT
GAAACCAGATCTTGATCTGTCGCTCGGTCAGGCAGAGGGCATGTGCGATC
TCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTC
CAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTCGTG
GACAGCCGTTGGGGCCGTTGAAATCGCCACAAACGACACGCTCGAAGGGG
CTTCCCATCCAGTCTGTAAGCGTCATCCAGGGATACCTGGGCAGATCGGC
GATACCGGCTCCGCCCGCTCCCCCTGCCCCTGGCATCACGCCGGAGGCGG
GCTGTGTGCAGGCATTTCCCAGCGAGTCCACGCCGATCGCGCCGGCACTG
GCCGCGGATACCGCGGATGCGGCGGCTGTGGCATGTTGATAGAACTGAGC
GAACTGTGCAGATGCCGAGGCAGGTACGCTCATCGACTGGTAGCTGTTCA
TGACAGTGTCCGTGTACCTGCTGCACGACTTATCCTCCAGTCCG

BS04814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10325-PB 1773 abd-A-RB 846..1773 944..17 4640 100 Minus
CG10325-PA 993 abd-A-RA 66..993 944..17 4640 100 Minus
CG10388-PB 1041 Ubx-RB 868..930 484..422 190 92 Minus
CG10388-PF 1068 Ubx-RF 895..957 484..422 190 92 Minus
CG10388-PD 1092 Ubx-RD 919..981 484..422 190 92 Minus
CG10388-PC 1119 Ubx-RC 946..1008 484..422 190 92 Minus
CG10388-PE 1143 Ubx-RE 970..1032 484..422 190 92 Minus
CG10388-PA 1170 Ubx-RA 997..1059 484..422 190 92 Minus
CG1030-PA 1254 Scr-RA 1063..1146 505..422 170 88 Minus
CG1030-PB 1254 Scr-RB 1063..1146 505..422 170 88 Minus
CG1030-PC 1254 Scr-RC 1063..1146 505..422 170 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
abd-A-RD 5269 CG10325-RD 1869..2796 944..17 4640 100 Minus
abd-A-RC 4559 CG10325-RC 1572..2499 944..17 4640 100 Minus
abd-A-RA 4458 CG10325-RA 1471..2398 944..17 4640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16809687..16810063 17..393 1885 100 Plus
3R 32079331 3R 16826051..16826310 664..923 1300 100 Plus
3R 32079331 3R 16810131..16810356 391..616 1130 100 Plus
3R 32079331 3R 16658852..16659059 391..598 395 79.3 Plus
3R 32079331 3R 6825490..6825645 422..577 390 83.3 Plus
3R 32079331 3R 6898360..6898521 422..583 345 80.9 Plus
3R 32079331 3R 6865315..6865475 583..423 340 80.7 Minus
3R 32079331 3R 16822421..16822472 615..666 260 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:29:41 has no hits.

BS04814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:59 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-PB 846..1773 17..944 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:29 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10325-PA 66..993 17..944 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:28 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1471..2401 12..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:39 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1471..2401 12..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:39 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16827135..16827158 921..944 100   Plus
3R 16809684..16810061 12..391 99 <- Plus
3R 16810132..16810355 392..615 100 <- Plus
3R 16822422..16822469 616..663 100 <- Plus
3R 16826051..16826307 664..920 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:28 Download gff for BS04814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12635406..12635783 12..391 99 <- Plus
arm_3R 12635854..12636077 392..615 100 <- Plus
arm_3R 12648144..12648191 616..663 100 <- Plus
arm_3R 12651773..12652029 664..920 100 <- Plus
arm_3R 12652857..12652880 921..944 100   Plus

BS04814.5prime Sequence

906 bp (845 high quality bases) assembled on 2005-12-02

> BS04814.5prime
GAAGTTATCAGTCGACATGTATCCGTACGTGTCTAACCACCCTAGCAGCC
ATGGAGGGCTCTCCGGAATGGCCGGCTTCACCGGACTGGAGGATAAGTCG
TGCAGCAGGTACACGGACACTGTCATGAACAGCTACCAGTCGATGAGCGT
ACCTGCCTCGGCATCTGCACAGTTCGCTCAGTTCTATCAACATGCCACAG
CCGCCGCATCCGCGGTATCCGCGGCCAGTGCCGGCGCGATCGGCGTGGAC
TCGCTGGGAAATGCCTGCACACAGCCCGCCTCCGGCGTGATGCCAGGGGC
AGGGGGAGCGGGCGGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGA
TGACGCTTACAGACTGGATGGGAAGCCCCTTCGAGCGTGTCGTTTGTGGC
GATTTCAACGGCCCCAACGGCTGTCCACGAAGGCGCGGTCGCCAGACCTA
CACTCGCTTCCAGACCCTCGAACTGGAGAAGGAGTTTCACTTCAACCACT
ACTTAACTCGGCGAAGGCGCATCGAGATCGCACATGCCCTCTGCCTGACC
GAGCGACAGATCAAGATCTGGTTTCAGAACCGTCGCATGAAGCTGAAGAA
GGAGTTACGAGCCGTCAAGGAAATAAATGAACAGGCGCGACGCGATCGAG
AGGAGCAGGAGAAAATGAAGGCCCAGGAGACGATGAAATCCGCCCAGCAG
AACAAGCAAGTGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCA
GCAGCAGCAACAGCACCAACAGCAGCAACAACAGCCGCAGGACCACCACT
CGATCATCGCACACAATCCAGGCCACTTGCACCACTCGGTGGTAGGTCAA
AACGATCTCAAGCTCGGCCTTGGCATGGGCGTGGGCGTCGGAGTGGGCGG
CATCGG

BS04814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10325-PB 1773 abd-A-RB 781..1670 17..906 4450 100 Plus
CG10325-PA 993 abd-A-RA 1..890 17..906 4450 100 Plus
CG10388-PB 1041 Ubx-RB 868..930 542..604 190 92 Plus
CG10388-PF 1068 Ubx-RF 895..957 542..604 190 92 Plus
CG10388-PD 1092 Ubx-RD 919..981 542..604 190 92 Plus
CG10388-PC 1119 Ubx-RC 946..1008 542..604 190 92 Plus
CG10388-PE 1143 Ubx-RE 970..1032 542..604 190 92 Plus
CG10388-PA 1170 Ubx-RA 997..1059 542..604 190 92 Plus
CG1030-PA 1254 Scr-RA 1063..1146 521..604 170 88 Plus
CG1030-PB 1254 Scr-RB 1063..1146 521..604 170 88 Plus
CG1030-PC 1254 Scr-RC 1063..1146 521..604 170 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
abd-A-RD 5269 CG10325-RD 1804..2693 17..906 4450 100 Plus
abd-A-RC 4559 CG10325-RC 1507..2396 17..906 4450 100 Plus
abd-A-RA 4458 CG10325-RA 1406..2295 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16809790..16810063 906..633 1370 100 Minus
3R 32079331 3R 16826051..16826310 362..103 1300 100 Minus
3R 32079331 3R 16810131..16810356 635..410 1130 100 Minus
3R 32079331 3R 16827135..16827223 105..17 445 100 Minus
3R 32079331 3R 16658852..16659059 635..428 395 79.3 Minus
3R 32079331 3R 6825490..6825645 604..449 390 83.3 Minus
3R 32079331 3R 6898360..6898521 604..443 345 80.9 Minus
3R 32079331 3R 6865315..6865475 443..603 340 80.7 Plus
3R 32079331 3R 16822421..16822472 411..360 260 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:14:35 has no hits.

BS04814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:00 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-PB 774..1670 9..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:31 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10325-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:41 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1399..2295 9..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:18 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1399..2295 9..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:18 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16809790..16810061 635..906 100 <- Minus
3R 16810132..16810355 411..634 100 <- Minus
3R 16822422..16822469 363..410 100 <- Minus
3R 16826051..16826307 106..362 100 <- Minus
3R 16827135..16827230 9..105 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:41 Download gff for BS04814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12635512..12635783 635..906 100 <- Minus
arm_3R 12635854..12636077 411..634 100 <- Minus
arm_3R 12648144..12648191 363..410 100 <- Minus
arm_3R 12651773..12652029 106..362 100 <- Minus
arm_3R 12652857..12652952 9..105 96   Minus

BS04814.complete Sequence

1025 bp (1025 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ635022

> BS04814.complete
GAAGTTATCAGTCGACATGTATCCGTACGTGTCTAACCACCCTAGCAGCC
ATGGAGGGCTCTCCGGAATGGCCGGCTTCACCGGACTGGAGGATAAGTCG
TGCAGCAGGTACACGGACACTGTCATGAACAGCTACCAGTCGATGAGCGT
ACCTGCCTCGGCATCTGCACAGTTCGCTCAGTTCTATCAACATGCCACAG
CCGCCGCATCCGCGGTATCCGCGGCCAGTGCCGGCGCGATCGGCGTGGAC
TCGCTGGGAAATGCCTGCACACAGCCCGCCTCCGGCGTGATGCCAGGGGC
AGGGGGAGCGGGCGGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGA
TGACGCTTACAGACTGGATGGGAAGCCCCTTCGAGCGTGTCGTTTGTGGC
GATTTCAACGGCCCCAACGGCTGTCCACGAAGGCGCGGTCGCCAGACCTA
CACTCGCTTCCAGACCCTCGAACTGGAGAAGGAGTTTCACTTCAACCACT
ACTTAACTCGGCGAAGGCGCATCGAGATCGCACATGCCCTCTGCCTGACC
GAGCGACAGATCAAGATCTGGTTTCAGAACCGTCGCATGAAGCTGAAGAA
GGAGTTACGAGCCGTCAAGGAAATAAATGAACAGGCGCGACGCGATCGAG
AGGAGCAGGAGAAAATGAAGGCCCAGGAGACGATGAAATCCGCCCAGCAG
AACAAGCAAGTGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCA
GCAGCAGCAACAGCACCAACAGCAGCAACAACAGCCGCAGGACCACCACT
CGATCATCGCACACAATCCAGGCCACTTGCACCACTCGGTGGTAGGTCAA
AACGATCTCAAGCTCGGCCTTGGCATGGGCGTGGGCGTCGGAGTGGGCGG
CATCGGGCCGGGCATCGGTGGCGGCTTGGGCGGCAATCTGGGCATGATGA
GCGCCCTGGACAAGAGCAATCACGACCTGCTAAAGGCGGTCAGCAAAGTC
AACTCCTAAAAGCTTTCTAGACCAT

BS04814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
abd-A-RD 993 CG10325-PD 1..993 17..1009 4965 100 Plus
abd-A-RC 993 CG10325-PC 1..993 17..1009 4965 100 Plus
abd-A-RA 993 CG10325-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
abd-A-RD 5269 CG10325-RD 1804..2796 17..1009 4965 100 Plus
abd-A-RC 4559 CG10325-RC 1507..2499 17..1009 4965 100 Plus
abd-A-RA 4458 CG10325-RA 1406..2398 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16809687..16810063 1009..633 1885 100 Minus
3R 32079331 3R 16826051..16826310 362..103 1300 100 Minus
3R 32079331 3R 16810131..16810356 635..410 1130 100 Minus
3R 32079331 3R 16827135..16827223 105..17 445 100 Minus
3R 32079331 3R 16658852..16659059 635..428 395 79.3 Minus
3R 32079331 3R 6825490..6825645 604..449 390 83.3 Minus
3R 32079331 3R 6898360..6898521 604..443 345 80.9 Minus
3R 32079331 3R 6865315..6865475 443..603 340 80.7 Plus
3R 32079331 3R 16822421..16822472 411..360 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:38:48 has no hits.

BS04814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:02 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:07 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
abd-A-RC 1795..2785 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:28 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1406..2396 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:02 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1694..2696 9..1014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:55 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
abd-A-RA 1406..2396 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:55 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16809689..16810061 635..1007 100 <- Minus
3R 16810132..16810355 411..634 100 <- Minus
3R 16822422..16822469 363..410 100 <- Minus
3R 16826051..16826307 106..362 100 <- Minus
3R 16827135..16827223 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:28 Download gff for BS04814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12635411..12635783 635..1007 100 <- Minus
arm_3R 12635854..12636077 411..634 100 <- Minus
arm_3R 12648144..12648191 363..410 100 <- Minus
arm_3R 12651773..12652029 106..362 100 <- Minus
arm_3R 12652857..12652945 17..105 100   Minus

BS04814.pep Sequence

Translation from 16 to 1008

> BS04814.pep
MYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASAS
AQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGG
AGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQT
LELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAV
KEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQQQQQQQQQH
QQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGLGMGVGVGVGGIGPGI
GGGLGGNLGMMSALDKSNHDLLKAVSKVNS*

BS04814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
abd-A-PD 330 CG10325-PD 1..330 1..330 1741 100 Plus
abd-A-PC 330 CG10325-PC 1..330 1..330 1741 100 Plus
abd-A-PA 330 CG10325-PA 1..330 1..330 1741 100 Plus
abd-A-PB 590 CG10325-PB 261..590 1..330 1741 100 Plus
Ubx-PD 363 CG10388-PD 240..363 109..234 366 59.2 Plus