Clone Sequence Records
BS04814.3prime Sequence
944 bp (817 high quality bases) assembled on 2005-12-02
> BS04814.3prime
ATGGTCTAGAAAGCTTTTAGGAGTTGACTTTGCTGACCGCCTTTAGCAGG
TCGTGATTGCTCTTGTCCAGGGCGCTCATCATGCCCAGATTGCCGCCCAA
GCCGCCACCGATGCCCGGCCCGATGCCGCCCACTCCGACGCCCACGCCCA
TGCCAAGGCCGAGCTTGAGATCGTTTTGACCTACCACCGAGTGGTGCAAG
TGGCCTGGATTGTGTGCGATGATCGAGTGGTGGTCCTGCGGCTGTTGTTG
CTGCTGTTGGTGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGCTGTT
GCTGCTGCTGTTGCACTTGCTTGTTCTGCTGGGCGGATTTCATCGTCTCC
TGGGCCTTCATTTTCTCCTGCTCCTCTCGATCGCGTCGCGCCTGTTCATT
TATTTCCTTGACGGCTCGTAACTCCTTCTTCAGCTTCATGCGACGGTTCT
GAAACCAGATCTTGATCTGTCGCTCGGTCAGGCAGAGGGCATGTGCGATC
TCGATGCGCCTTCGCCGAGTTAAGTAGTGGTTGAAGTGAAACTCCTTCTC
CAGTTCGAGGGTCTGGAAGCGAGTGTAGGTCTGGCGACCGCGCCTTCGTG
GACAGCCGTTGGGGCCGTTGAAATCGCCACAAACGACACGCTCGAAGGGG
CTTCCCATCCAGTCTGTAAGCGTCATCCAGGGATACCTGGGCAGATCGGC
GATACCGGCTCCGCCCGCTCCCCCTGCCCCTGGCATCACGCCGGAGGCGG
GCTGTGTGCAGGCATTTCCCAGCGAGTCCACGCCGATCGCGCCGGCACTG
GCCGCGGATACCGCGGATGCGGCGGCTGTGGCATGTTGATAGAACTGAGC
GAACTGTGCAGATGCCGAGGCAGGTACGCTCATCGACTGGTAGCTGTTCA
TGACAGTGTCCGTGTACCTGCTGCACGACTTATCCTCCAGTCCG
BS04814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10325-PB | 1773 | abd-A-RB | 846..1773 | 944..17 | 4640 | 100 | Minus |
CG10325-PA | 993 | abd-A-RA | 66..993 | 944..17 | 4640 | 100 | Minus |
CG10388-PB | 1041 | Ubx-RB | 868..930 | 484..422 | 190 | 92 | Minus |
CG10388-PF | 1068 | Ubx-RF | 895..957 | 484..422 | 190 | 92 | Minus |
CG10388-PD | 1092 | Ubx-RD | 919..981 | 484..422 | 190 | 92 | Minus |
CG10388-PC | 1119 | Ubx-RC | 946..1008 | 484..422 | 190 | 92 | Minus |
CG10388-PE | 1143 | Ubx-RE | 970..1032 | 484..422 | 190 | 92 | Minus |
CG10388-PA | 1170 | Ubx-RA | 997..1059 | 484..422 | 190 | 92 | Minus |
CG1030-PA | 1254 | Scr-RA | 1063..1146 | 505..422 | 170 | 88 | Minus |
CG1030-PB | 1254 | Scr-RB | 1063..1146 | 505..422 | 170 | 88 | Minus |
CG1030-PC | 1254 | Scr-RC | 1063..1146 | 505..422 | 170 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
abd-A-RD | 5269 | CG10325-RD | 1869..2796 | 944..17 | 4640 | 100 | Minus |
abd-A-RC | 4559 | CG10325-RC | 1572..2499 | 944..17 | 4640 | 100 | Minus |
abd-A-RA | 4458 | CG10325-RA | 1471..2398 | 944..17 | 4640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16809687..16810063 | 17..393 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 16826051..16826310 | 664..923 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 16810131..16810356 | 391..616 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 16658852..16659059 | 391..598 | 395 | 79.3 | Plus |
3R | 32079331 | 3R | 6825490..6825645 | 422..577 | 390 | 83.3 | Plus |
3R | 32079331 | 3R | 6898360..6898521 | 422..583 | 345 | 80.9 | Plus |
3R | 32079331 | 3R | 6865315..6865475 | 583..423 | 340 | 80.7 | Minus |
3R | 32079331 | 3R | 16822421..16822472 | 615..666 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:29:41 has no hits.
BS04814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:57:59 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-PB | 846..1773 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:29 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10325-PA | 66..993 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:05:28 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1471..2401 | 12..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:16:39 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1471..2401 | 12..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:16:39 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16827135..16827158 | 921..944 | 100 | | Plus |
3R | 16809684..16810061 | 12..391 | 99 | <- | Plus |
3R | 16810132..16810355 | 392..615 | 100 | <- | Plus |
3R | 16822422..16822469 | 616..663 | 100 | <- | Plus |
3R | 16826051..16826307 | 664..920 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:05:28 Download gff for
BS04814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12635406..12635783 | 12..391 | 99 | <- | Plus |
arm_3R | 12635854..12636077 | 392..615 | 100 | <- | Plus |
arm_3R | 12648144..12648191 | 616..663 | 100 | <- | Plus |
arm_3R | 12651773..12652029 | 664..920 | 100 | <- | Plus |
arm_3R | 12652857..12652880 | 921..944 | 100 | | Plus |
BS04814.5prime Sequence
906 bp (845 high quality bases) assembled on 2005-12-02
> BS04814.5prime
GAAGTTATCAGTCGACATGTATCCGTACGTGTCTAACCACCCTAGCAGCC
ATGGAGGGCTCTCCGGAATGGCCGGCTTCACCGGACTGGAGGATAAGTCG
TGCAGCAGGTACACGGACACTGTCATGAACAGCTACCAGTCGATGAGCGT
ACCTGCCTCGGCATCTGCACAGTTCGCTCAGTTCTATCAACATGCCACAG
CCGCCGCATCCGCGGTATCCGCGGCCAGTGCCGGCGCGATCGGCGTGGAC
TCGCTGGGAAATGCCTGCACACAGCCCGCCTCCGGCGTGATGCCAGGGGC
AGGGGGAGCGGGCGGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGA
TGACGCTTACAGACTGGATGGGAAGCCCCTTCGAGCGTGTCGTTTGTGGC
GATTTCAACGGCCCCAACGGCTGTCCACGAAGGCGCGGTCGCCAGACCTA
CACTCGCTTCCAGACCCTCGAACTGGAGAAGGAGTTTCACTTCAACCACT
ACTTAACTCGGCGAAGGCGCATCGAGATCGCACATGCCCTCTGCCTGACC
GAGCGACAGATCAAGATCTGGTTTCAGAACCGTCGCATGAAGCTGAAGAA
GGAGTTACGAGCCGTCAAGGAAATAAATGAACAGGCGCGACGCGATCGAG
AGGAGCAGGAGAAAATGAAGGCCCAGGAGACGATGAAATCCGCCCAGCAG
AACAAGCAAGTGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCA
GCAGCAGCAACAGCACCAACAGCAGCAACAACAGCCGCAGGACCACCACT
CGATCATCGCACACAATCCAGGCCACTTGCACCACTCGGTGGTAGGTCAA
AACGATCTCAAGCTCGGCCTTGGCATGGGCGTGGGCGTCGGAGTGGGCGG
CATCGG
BS04814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10325-PB | 1773 | abd-A-RB | 781..1670 | 17..906 | 4450 | 100 | Plus |
CG10325-PA | 993 | abd-A-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
CG10388-PB | 1041 | Ubx-RB | 868..930 | 542..604 | 190 | 92 | Plus |
CG10388-PF | 1068 | Ubx-RF | 895..957 | 542..604 | 190 | 92 | Plus |
CG10388-PD | 1092 | Ubx-RD | 919..981 | 542..604 | 190 | 92 | Plus |
CG10388-PC | 1119 | Ubx-RC | 946..1008 | 542..604 | 190 | 92 | Plus |
CG10388-PE | 1143 | Ubx-RE | 970..1032 | 542..604 | 190 | 92 | Plus |
CG10388-PA | 1170 | Ubx-RA | 997..1059 | 542..604 | 190 | 92 | Plus |
CG1030-PA | 1254 | Scr-RA | 1063..1146 | 521..604 | 170 | 88 | Plus |
CG1030-PB | 1254 | Scr-RB | 1063..1146 | 521..604 | 170 | 88 | Plus |
CG1030-PC | 1254 | Scr-RC | 1063..1146 | 521..604 | 170 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
abd-A-RD | 5269 | CG10325-RD | 1804..2693 | 17..906 | 4450 | 100 | Plus |
abd-A-RC | 4559 | CG10325-RC | 1507..2396 | 17..906 | 4450 | 100 | Plus |
abd-A-RA | 4458 | CG10325-RA | 1406..2295 | 17..906 | 4450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16809790..16810063 | 906..633 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 16826051..16826310 | 362..103 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 16810131..16810356 | 635..410 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 16827135..16827223 | 105..17 | 445 | 100 | Minus |
3R | 32079331 | 3R | 16658852..16659059 | 635..428 | 395 | 79.3 | Minus |
3R | 32079331 | 3R | 6825490..6825645 | 604..449 | 390 | 83.3 | Minus |
3R | 32079331 | 3R | 6898360..6898521 | 604..443 | 345 | 80.9 | Minus |
3R | 32079331 | 3R | 6865315..6865475 | 443..603 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 16822421..16822472 | 411..360 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:14:35 has no hits.
BS04814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:00 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-PB | 774..1670 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:31 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10325-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:41 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1399..2295 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:18 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1399..2295 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:18 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16809790..16810061 | 635..906 | 100 | <- | Minus |
3R | 16810132..16810355 | 411..634 | 100 | <- | Minus |
3R | 16822422..16822469 | 363..410 | 100 | <- | Minus |
3R | 16826051..16826307 | 106..362 | 100 | <- | Minus |
3R | 16827135..16827230 | 9..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:41 Download gff for
BS04814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12635512..12635783 | 635..906 | 100 | <- | Minus |
arm_3R | 12635854..12636077 | 411..634 | 100 | <- | Minus |
arm_3R | 12648144..12648191 | 363..410 | 100 | <- | Minus |
arm_3R | 12651773..12652029 | 106..362 | 100 | <- | Minus |
arm_3R | 12652857..12652952 | 9..105 | 96 | | Minus |
BS04814.complete Sequence
1025 bp (1025 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ635022
> BS04814.complete
GAAGTTATCAGTCGACATGTATCCGTACGTGTCTAACCACCCTAGCAGCC
ATGGAGGGCTCTCCGGAATGGCCGGCTTCACCGGACTGGAGGATAAGTCG
TGCAGCAGGTACACGGACACTGTCATGAACAGCTACCAGTCGATGAGCGT
ACCTGCCTCGGCATCTGCACAGTTCGCTCAGTTCTATCAACATGCCACAG
CCGCCGCATCCGCGGTATCCGCGGCCAGTGCCGGCGCGATCGGCGTGGAC
TCGCTGGGAAATGCCTGCACACAGCCCGCCTCCGGCGTGATGCCAGGGGC
AGGGGGAGCGGGCGGAGCCGGTATCGCCGATCTGCCCAGGTATCCCTGGA
TGACGCTTACAGACTGGATGGGAAGCCCCTTCGAGCGTGTCGTTTGTGGC
GATTTCAACGGCCCCAACGGCTGTCCACGAAGGCGCGGTCGCCAGACCTA
CACTCGCTTCCAGACCCTCGAACTGGAGAAGGAGTTTCACTTCAACCACT
ACTTAACTCGGCGAAGGCGCATCGAGATCGCACATGCCCTCTGCCTGACC
GAGCGACAGATCAAGATCTGGTTTCAGAACCGTCGCATGAAGCTGAAGAA
GGAGTTACGAGCCGTCAAGGAAATAAATGAACAGGCGCGACGCGATCGAG
AGGAGCAGGAGAAAATGAAGGCCCAGGAGACGATGAAATCCGCCCAGCAG
AACAAGCAAGTGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCA
GCAGCAGCAACAGCACCAACAGCAGCAACAACAGCCGCAGGACCACCACT
CGATCATCGCACACAATCCAGGCCACTTGCACCACTCGGTGGTAGGTCAA
AACGATCTCAAGCTCGGCCTTGGCATGGGCGTGGGCGTCGGAGTGGGCGG
CATCGGGCCGGGCATCGGTGGCGGCTTGGGCGGCAATCTGGGCATGATGA
GCGCCCTGGACAAGAGCAATCACGACCTGCTAAAGGCGGTCAGCAAAGTC
AACTCCTAAAAGCTTTCTAGACCAT
BS04814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
abd-A-RD | 993 | CG10325-PD | 1..993 | 17..1009 | 4965 | 100 | Plus |
abd-A-RC | 993 | CG10325-PC | 1..993 | 17..1009 | 4965 | 100 | Plus |
abd-A-RA | 993 | CG10325-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
abd-A-RD | 5269 | CG10325-RD | 1804..2796 | 17..1009 | 4965 | 100 | Plus |
abd-A-RC | 4559 | CG10325-RC | 1507..2499 | 17..1009 | 4965 | 100 | Plus |
abd-A-RA | 4458 | CG10325-RA | 1406..2398 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16809687..16810063 | 1009..633 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 16826051..16826310 | 362..103 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 16810131..16810356 | 635..410 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 16827135..16827223 | 105..17 | 445 | 100 | Minus |
3R | 32079331 | 3R | 16658852..16659059 | 635..428 | 395 | 79.3 | Minus |
3R | 32079331 | 3R | 6825490..6825645 | 604..449 | 390 | 83.3 | Minus |
3R | 32079331 | 3R | 6898360..6898521 | 604..443 | 345 | 80.9 | Minus |
3R | 32079331 | 3R | 6865315..6865475 | 443..603 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 16822421..16822472 | 411..360 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:38:48 has no hits.
BS04814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:02 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:07 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RC | 1795..2785 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:28 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1406..2396 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:02 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1694..2696 | 9..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:55 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
abd-A-RA | 1406..2396 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:55 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16809689..16810061 | 635..1007 | 100 | <- | Minus |
3R | 16810132..16810355 | 411..634 | 100 | <- | Minus |
3R | 16822422..16822469 | 363..410 | 100 | <- | Minus |
3R | 16826051..16826307 | 106..362 | 100 | <- | Minus |
3R | 16827135..16827223 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:28 Download gff for
BS04814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12635411..12635783 | 635..1007 | 100 | <- | Minus |
arm_3R | 12635854..12636077 | 411..634 | 100 | <- | Minus |
arm_3R | 12648144..12648191 | 363..410 | 100 | <- | Minus |
arm_3R | 12651773..12652029 | 106..362 | 100 | <- | Minus |
arm_3R | 12652857..12652945 | 17..105 | 100 | | Minus |
BS04814.pep Sequence
Translation from 16 to 1008
> BS04814.pep
MYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASAS
AQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGG
AGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQT
LELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAV
KEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQQQQQQQQQH
QQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGLGMGVGVGVGGIGPGI
GGGLGGNLGMMSALDKSNHDLLKAVSKVNS*
BS04814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
abd-A-PD | 330 | CG10325-PD | 1..330 | 1..330 | 1741 | 100 | Plus |
abd-A-PC | 330 | CG10325-PC | 1..330 | 1..330 | 1741 | 100 | Plus |
abd-A-PA | 330 | CG10325-PA | 1..330 | 1..330 | 1741 | 100 | Plus |
abd-A-PB | 590 | CG10325-PB | 261..590 | 1..330 | 1741 | 100 | Plus |
Ubx-PD | 363 | CG10388-PD | 240..363 | 109..234 | 366 | 59.2 | Plus |