Clone BS04819 Report

Search the DGRC for BS04819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG1233-RB
Protein status:BS04819.pep: full length peptide match
Sequenced Size:3422

Clone Sequence Records

BS04819.3prime Sequence

882 bp (771 high quality bases) assembled on 2005-12-02

> BS04819.3prime
ATGGTCTAGAAAGCTTCTAGGAAGCCTGCAGGATATTCTCTTGAGCCTTG
ATCACCTCCGTAGCCACTTTTGTACTGGAATGAGCGAGCACCAAATTGCT
CTCCACCTTGATCTGTGATTGTTTCTCCACCGGAACATCACCCTGGGATG
ACGCTAAAGTTTGATTGTGATTTCCGGCGTCATGCTTGGCCTGGTGAACC
TGCAACAGACCTTGATTGATGCTGGTGAAGTTGCACTGGTTGCATTTGTA
AATGATTGTGGACAGCTCCTGTTCAGGATGGCGGGTCTGAAGGTGTATCC
GAAAGGCGGTGCTCTGGATGGCTCGGAAGTCGCAGTGCGGGCAGGAGTAG
CGTTTACTCTCCTTGTGCGTGGCTAGGTGGCGGCGATAGGCATTGTGATC
GCTGGTCTCATGATCACAGGTGTCGCAGCGGAAACGTTTATGCTCCTGAT
GGCTCCGAAGATGAAGTCTCAGGCTGCTCTTAGAACCAAAACGGCGCTGG
CACTCGGGGCATTCCAGCTGTTCGTTTCGCTCTTTGCATAGGTGCTCCCT
TAGGGTTTTCTTCTGCTTGAAGGCGGCGCCGCAATCTTCGCAGCGATGCA
TTACAACGGGATTACCTTCTGGTCCCACGGAAATCTGCTCGTTCGACTGC
TTTCCCATGCCCAATCCTTGAGTGCGATGCAAGCGACGGTGATTCTTCAA
TTGCTTGGTGTTCTTAAATCCCTTGCCACACTGCTCGCACTTATAGTTTC
GCTCCTCCGAGTGGATCTTAGCGTGGGTGTTCACGAGACGCGAATAGATG
GGCGTCTTAAAGCTGCACAGCTGGCAGGAGTACAGCTCCATGTCGATTTG
GTGGGTCCGCCAGAGATGCGTATGCAGACAGT

BS04819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-PB 3390 CG1233-RB 2525..3390 882..17 4330 100 Minus
CG1233-PA 2826 CG1233-RA 1961..2826 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-RA 4064 CG1233-RA 2764..3629 882..17 4330 100 Minus
CG1233-RB 4011 CG1233-RB 2711..3576 882..17 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 364320..364903 882..299 2920 100 Minus
3L 28110227 3L 364964..365246 299..17 1415 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:19:39 has no hits.

BS04819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:02 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-PB 2525..3390 17..882 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:32 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-PA 1961..2826 17..882 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 09:59:40 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 2711..3576 17..882 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:05 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 2711..3576 17..882 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:05 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 364320..364903 299..882 100 -> Minus
3L 364965..365246 17..298 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 09:59:40 Download gff for BS04819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 364320..364903 299..882 100 -> Minus
arm_3L 364965..365246 17..298 100   Minus

BS04819.5prime Sequence

849 bp (743 high quality bases) assembled on 2005-12-02

> BS04819.5prime
GAAGTTATCAGTCGACATGAGCGATGCGACCTATCCGGGATATTACGGCG
GCAACCAGCTGCTCCCGTTGTCGCATCCGCATCCTACACATCCGCACCAA
GACCTGTCGCTTTCCACGCCGGTTCACTCCTTGGAGCAGGACTCCAACTT
CGGGGGATTCTTTGACGAAGAGCTGGTCATCGGATCGGGATCCGGATCTG
CCTCCGCGTCTGCTGCAAACACCACCCCTTCTGGAACTACTTTGTGGCTG
GCCGATGGCGGGAATCGATCACCTACTGAGGTGGCGGTGGAGTCCCAGCC
CAATCAGGGCATTCCCTTTGTCCAGATCCACACCACCGACTTGCAGCAAC
CAGAGAAAAGCTACCGCAATGCCTTCCGCAGGCGTACAGCGGAAATTAAG
TCGGAGGAACTAATCAAGTCGGAACTTGCGGAAGCGGCAGCCAAGGATCG
CCTGAATGCCACGCCAACGCCACCAACTCGAAATTCCAGCTGCGCCAGCG
TGGAGGGCAAGGCAATCATTCAGGAGGGTCCGCCTCTTATCCTGCGCTGT
CCTAATTGTCCATTCTTAAGCCTCTGCCAGATGCGTCTTCAGCAACACCT
TAGTCAGGGCAACTGCTATATGGAGCAGCACAGGAAACAGTGTCCAGGCT
GCTCAAACATTTTCTACACCAGCGATGCGCTCAGCTTGCACCTCAGCTTG
GACCATCAAATGGAGGACAGTGAGACACTTGCGCTTATGGGCAGAAAAGT
CACTGAAGCACAAACTAAAAAGCAGACTCAGATGTCGCAGAGCCAAAATC
GACCCCAGAGCCGCATCTTTATAAAAAGCGTAGATTGCCTAAGGGAGCC

BS04819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-PB 3390 CG1233-RB 1..833 17..849 4140 99.8 Plus
CG1233-PA 2826 CG1233-RA 1..269 581..849 1320 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-RB 4011 CG1233-RB 187..1019 17..849 4150 99.9 Plus
CG1233-RA 4064 CG1233-RA 278..1072 55..849 3960 99.9 Plus
CG1233-RA 4064 CG1233-RA 187..228 17..58 210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 361749..362342 55..648 2970 100 Plus
3L 28110227 3L 362424..362628 645..849 1010 99.5 Plus
3L 28110227 3L 361658..361699 17..58 210 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:14:48 has no hits.

BS04819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:03 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-PB 1..833 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:34 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-PB 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:13:43 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 179..1019 9..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:21 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 179..1019 9..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:21 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 361650..361699 9..58 92 -> Plus
3L 361753..362341 59..647 100 -> Plus
3L 362427..362628 648..849 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:13:43 Download gff for BS04819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 361650..361699 9..58 92 -> Plus
arm_3L 361753..362341 59..647 100 -> Plus
arm_3L 362427..362628 648..849 99   Plus

BS04819.complete Sequence

3422 bp assembled on 2008-08-15

GenBank Submission: KX795941

> BS04819.complete
GAAGTTATCAGTCGACATGAGCGATGCGACCTATCCGGGATATTACGGCG
GCAACCAGCTGCTCCCGTTGTCGCATCCGCATCCTACACATCCGCACCAA
GACCTGTCGCTTTCCACGCCGGTTCACTCCTTGGAGCAGGACTCCAACTT
CGGGGGATTCTTTGACGAAGAGCTGGTCATCGGATCGGGATCCGGATCTG
CCTCCGCGTCTGCTGCAAACACCACCCCTTCTGGAACTACTTTGTGGCTG
GCCGATGGCGGGAATCGATCACCTACTGAGGTGGCGGTGGAGTCCCAGCC
CAATCAGGGCATTCCCTTTGTCCAGATCCACACCACCGACTTGCAGCAAC
CAGAGAAAAGCTACCGCAATGCCTTCCGCAGGCGTACAGCGGAAATTAAG
TCGGAGGAACTAATCAAGTCGGAACTTGCGGAAGCGGCAGCCAAGGATCG
CCTGAATGCCACGCCAACGCCACCAACTCGAAATTCCAGCTGCGCCAGCG
TGGAGGGCAAGGCAATCATTCAGGAGGGTCCGCCTCTTATCCTGCGCTGT
CCTAATTGTCCATTCTTAAGCCTCTGCCAGATGCGTCTTCAGCAACACCT
TAGTCAGGGCAACTGCTATATGGAGCAGCACAGGAAACAGTGTCCAGGCT
GCTCAAACATTTTCTACACCAGCGATGCGCTCAGCTTGCACCTCAGCTTG
GACCATCAAATGGAGGACAGTGAGACACTTGCGCTTATGGGCAGAAAAGT
CACTGAAGCACAAACTAAAAAGCAGACTCAGATGTCGCAGAGCCAAAATC
GACCCAAGAGCCGCATCTTTATAAAAAGCGTAGATTGCCTAAGGGAGCCA
CTCCCGGATTTCCCGCCCTTAATGCCGGATAGCGGGTCCGCCGCTAACAT
TCTTGATCTGCTGGAAGGTGTGGCTGTAGGTGCATCGCCGACCGAACAGA
CAATGCCAACAGCACCTGCTGCGAATTTACCAGCTCCGCCGCCAAAGCCC
ATCCAGAAGATCTCCATCAAGAGCGTGGACGTGCTCAGGGAGACCGCTTT
GCTGCCGTTCGACTTCCAGCTGCAGAACCATTCGGTCAATACGGACAATA
GTCTCCCTGAAGTTCCTGATGTTGTCGGGGAGCCGGAGAAGCCGCGCCAG
CCGAAGATTTATATCCGCAATGTAGACATCCTCAAGGAACCGATGGTTTT
GCCATCTGCTCTGCCCGGTCTGGGATTCAATAGCACCATGCCGTCGGCAG
CAGAGCCAGGACAAAGTGGCCTGGTTGTAGGAGGAGCAGATGGTGATGTC
TTCCAGTCGGAGACACTACTAACGCCCACGTGTCAGCTTCCAGGATTCGA
GCCCAGCCTCGCCCCGCTCGCACAGATGTGTTCCGAGGCATTTCCCTTTG
ATTCTGTGCTGAATGGCAATGGAGCACCTGCCGCCCATGTGGAAAACACA
CGTTTTAGTGCTTTGGACCTTGATTTTGGTGTGGATTTTGTTTCGGAAGA
GGCAACTCCGCCACCTCCTCTGAATGATCCACTGACAATGATGGAACCAC
AACCTGTCCAGCTGGAGCACTACATGCCACCTACGGCTCCCATTACGACC
AAGCAAAAGATCTTCATCAAAAACGTGGACATTTTGAAAGCACCGCAGAG
GGGCACCTTGCACCTGCGCACTGTGGACGAACTAAACCTAATGAATCGCA
CCGAGGTGGAGCACTTAATCGTGCCCAATCTAGAACCGATGGCAATGACC
ATGATGGAGCTTCCGCCCGTGCAGCAGCAGCCAATGGAAGTAACTTCACA
GCTCAAGGGACCAACGGAAACGCTTGGCGAATTTCAGCCGTCTATTAGTG
AAAGTTGGCCTAGCGAGGATGGCTATGACCTACCTGAGGATCTGGAGTGC
TGGCCGTGGATGGAAGATGCTGTACCAGAAGCTGGACTCGTTCTGCCTAC
ACCCAGTGAAGTGGCTAATGCTCCCCCACTCGATGGTTTGTCTCACAATG
CAGTGGATCTGCTAGTCAAGGATTTTTCGCATTTGTACGCCGCACCACCG
GAGGACACACAAAACGCAGAAGAAGGAACTGCAGCGGGAGGACGAGGGAC
AGTGCCACCTCTAGTACCGGTAACATCTTCGGAAGGGACAGCCTCTGTTG
CTCAAAGTGCAGCATTAGGTAGTTTGCCGGTTCCGCCGCTGGTTCCCTTG
GCAGCCGAGATGAATGCTGCTATCGAAAAGCCAGCCCGCATCTATGTGGC
CAATAATCTTCTTCCCGCCGCCGTGGACCCACCGCTTCTTGGAGGCGGCA
CCTCGGTCAGGGGCCGTCCCTACGGAGCGAAGCACTCTGGTGGAGCAGCT
TCCAAAAGAAAACTCTCTCTGGGCCCAAATCAAGTGCCAGAGGGAGGCAA
GTGCCTTGTGGAGGGCTGTATGTTCCGTTTCAAATCACCCGTAACTTTGG
AGTATCACGGCAGATGCCACAATGGATCCCTCAGCTCAAACCAACCCGTT
GTGTGCCCGGAATGCAAGTCCAGCAACTTTAGCAATTGGAACTGTCTGCA
TACGCATCTCTGGCGGACCCACCAAATCGACATGGAGCTGTACTCCTGCC
AGCTGTGCAGCTTTAAGACGCCCATCTATTCGCGTCTCGTGAACACCCAC
GCTAAGATCCACTCGGAGGAGCGAAACTATAAGTGCGAGCAGTGTGGCAA
GGGATTTAAGAACACCAAGCAATTGAAGAATCACCGTCGCTTGCATCGCA
CTCAAGGATTGGGCATGGGAAAGCAGTCGAACGAGCAGATTTCCGTGGGA
CCAGAAGGTAATCCCGTTGTAATGCATCGCTGCGAAGATTGCGGCGCCGC
CTTCAAGCAGAAGAAAACCCTAAGGGAGCACCTATGCAAAGAGCGAAACG
AACAGCTGGAATGCCCCGAGTGCCAGCGCCGTTTTGGTTCTAAGAGCAGC
CTGAGACTTCATCTTCGGAGCCATCAGGAGCATAAACGTTTCCGCTGCGA
CACCTGTGATCATGAGACCAGCGATCACAATGCCTATCGCCGCCACCTAG
CCACGCACAAGGAGAGTAAACGCTACTCCTGCCCGCACTGCGACTTCCGA
GCCATCCAGAGCACCGCCTTTCGGATACACCTTCAGACCCGCCATCCTGA
ACAGGAGCTGTCCACAATCATTTACAAATGCAACCAGTGCAACTTCACCA
GCATCAATCAAGGTCTGTTGCAGGTTCACCAGGCCAAGCATGACGCCGGA
AATCACAATCAAACTTTAGCGTCATCCCAGGGTGATGTTCCGGTGGAGAA
ACAATCACAGATCAAGGTGGAGAGCAATTTGGTGCTCGCTCATTCCAGTA
CAAAAGTGGCTACGGAGGTGATCAAGGCTCAAGAGAATATCCTGCAGGCT
TCCTAGAAGCTTTCTAGACCAT

BS04819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-RB 3390 CG1233-PB 1..3390 17..3406 16935 100 Plus
CG1233-RA 2826 CG1233-PA 1..2826 581..3406 14115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-RB 4011 CG1233-RB 187..3576 17..3406 16935 100 Plus
CG1233-RA 4064 CG1233-RA 278..3629 55..3406 16745 100 Plus
CG1233-RA 4064 CG1233-RA 187..228 17..58 210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 362424..364903 645..3124 12385 100 Plus
3L 28110227 3L 361749..362342 55..648 2970 100 Plus
3L 28110227 3L 364964..365246 3124..3406 1415 100 Plus
3L 28110227 3L 361658..361699 17..58 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:33:58 has no hits.

BS04819.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:26:16 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 173..3570 9..3406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:07 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 187..3576 17..3406 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:13 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 181..3570 17..3406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:58 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
CG1233-RB 187..3576 17..3406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:58 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 361658..361699 17..58 100 -> Plus
3L 361753..362341 59..647 100 -> Plus
3L 362427..364903 648..3124 99 -> Plus
3L 364965..365246 3125..3406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:07 Download gff for BS04819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 362427..364903 648..3124 99 -> Plus
arm_3L 361658..361699 17..58 100 -> Plus
arm_3L 361753..362341 59..647 100 -> Plus
arm_3L 364965..365246 3125..3406 100   Plus

BS04819.pep Sequence

Translation from 16 to 3405

> BS04819.pep
MSDATYPGYYGGNQLLPLSHPHPTHPHQDLSLSTPVHSLEQDSNFGGFFD
EELVIGSGSGSASASAANTTPSGTTLWLADGGNRSPTEVAVESQPNQGIP
FVQIHTTDLQQPEKSYRNAFRRRTAEIKSEELIKSELAEAAAKDRLNATP
TPPTRNSSCASVEGKAIIQEGPPLILRCPNCPFLSLCQMRLQQHLSQGNC
YMEQHRKQCPGCSNIFYTSDALSLHLSLDHQMEDSETLALMGRKVTEAQT
KKQTQMSQSQNRPKSRIFIKSVDCLREPLPDFPPLMPDSGSAANILDLLE
GVAVGASPTEQTMPTAPAANLPAPPPKPIQKISIKSVDVLRETALLPFDF
QLQNHSVNTDNSLPEVPDVVGEPEKPRQPKIYIRNVDILKEPMVLPSALP
GLGFNSTMPSAAEPGQSGLVVGGADGDVFQSETLLTPTCQLPGFEPSLAP
LAQMCSEAFPFDSVLNGNGAPAAHVENTRFSALDLDFGVDFVSEEATPPP
PLNDPLTMMEPQPVQLEHYMPPTAPITTKQKIFIKNVDILKAPQRGTLHL
RTVDELNLMNRTEVEHLIVPNLEPMAMTMMELPPVQQQPMEVTSQLKGPT
ETLGEFQPSISESWPSEDGYDLPEDLECWPWMEDAVPEAGLVLPTPSEVA
NAPPLDGLSHNAVDLLVKDFSHLYAAPPEDTQNAEEGTAAGGRGTVPPLV
PVTSSEGTASVAQSAALGSLPVPPLVPLAAEMNAAIEKPARIYVANNLLP
AAVDPPLLGGGTSVRGRPYGAKHSGGAASKRKLSLGPNQVPEGGKCLVEG
CMFRFKSPVTLEYHGRCHNGSLSSNQPVVCPECKSSNFSNWNCLHTHLWR
THQIDMELYSCQLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNT
KQLKNHRRLHRTQGLGMGKQSNEQISVGPEGNPVVMHRCEDCGAAFKQKK
TLREHLCKERNEQLECPECQRRFGSKSSLRLHLRSHQEHKRFRCDTCDHE
TSDHNAYRRHLATHKESKRYSCPHCDFRAIQSTAFRIHLQTRHPEQELST
IIYKCNQCNFTSINQGLLQVHQAKHDAGNHNQTLASSQGDVPVEKQSQIK
VESNLVLAHSSTKVATEVIKAQENILQAS*

BS04819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1233-PB 1129 CG1233-PB 1..1129 1..1129 5995 100 Plus
CG1233-PA 941 CG1233-PA 1..941 189..1129 5003 100 Plus
CG11456-PC 445 CG11456-PC 107..373 801..1078 314 28.8 Plus
CG11456-PA 445 CG11456-PA 107..373 801..1078 314 28.8 Plus
CG5245-PA 501 CG5245-PA 80..270 857..1075 283 28.6 Plus