Clone Sequence Records
BS04828.3prime Sequence
772 bp (763 high quality bases) assembled on 2005-12-02
> BS04828.3prime
ATGGTCTAGAAAGCTTTCAAGCTACTGGCGACGAATCGCCTTTCATGTCG
CGCTCACGAAAAAACCCGCGCTCCGTCTTGCACTCGCGTATGGTAACGGT
CTCCAGGTTTACGGTGACGTCTGTGATCACCACCCGGTTGGATATGTTGC
ATTTGGCCGGCAGCCAGAAGCGCGGCGGAAGGGCACGCGGCGAAAGAGGA
GTAAGCGGCTGTTTCTGGTTGATAGCCAGGTTGTTGCACGGTTTTGGTAT
GTTATTGTTCTCGGAAGGAACCTGTGGCGCCTGTTGGTTGCCTTCCTCGT
TGGCTACTTCTTCTTCCTCAGCTCCGGACTCTGCGGGCGTTGTGTTTATG
GCTTCTGTGGCCAGTGGGGTGGCCTGCTGCTCAGATTTCAGCTGCGTTGC
AGCCTCGCTGGCAATCTTTTCCGCTTGCTGCTGATCCTGGAAGGGCTGCT
GCTGGCTGGGAGTTACCTGCTGGGTCGGCTGAGGCTTAATAGTGGGGCCA
TCTGGGGAGGTCTTAATCGTAACTCCAATCTTGCCCGATTCCTTGAGCAC
CTCGGCTTTGCGTTTGGTGCCGATCAGCGGCTGATCCTCGGAGCTGGAGG
AGTTGCTGTCCGGCTCGGGGACAAATGAGTTGTGCGTGAAGCTGCTGTTC
GAGGAGGAGCTGTGATCAATGCGCTGACGCTTGGACTCGTGGTGGTGGTG
ATGATGATGGTGGGTCAGCGGAGATTCCGAGCGCCGTCCACTGTTGCGTT
CGGACTTGATGTGGTGAGATGG
BS04828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32443-PA | 1173 | Pc-RA | 423..1173 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 2462 | CG32443-RA | 527..1283 | 772..17 | 3760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21316424..21317174 | 17..767 | 3755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:19:10 has no hits.
BS04828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:58:09 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:42 Download gff for
BS04828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32443-PA | 417..1173 | 17..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 09:59:37 Download gff for
BS04828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 527..1292 | 3..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:51 Download gff for
BS04828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 527..1292 | 3..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:51 Download gff for
BS04828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21316415..21317180 | 3..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 09:59:37 Download gff for
BS04828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21309515..21310280 | 3..772 | 99 | | Plus |
BS04828.5prime Sequence
858 bp (783 high quality bases) assembled on 2005-12-02
> BS04828.5prime
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCAT
BS04828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32443-PA | 1173 | Pc-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 2462 | CG32443-RA | 111..952 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21316755..21317484 | 858..129 | 3650 | 100 | Minus |
| 3L | 28110227 | 3L | 21317796..21317910 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:07:36 has no hits.
BS04828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:58:10 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:43 Download gff for
BS04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32443-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:34 Download gff for
BS04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..952 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:36 Download gff for
BS04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..952 | 17..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:36 Download gff for
BS04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21316755..21317482 | 131..858 | 100 | <- | Minus |
| 3L | 21317797..21317910 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:34 Download gff for
BS04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21309855..21310582 | 131..858 | 100 | <- | Minus |
| arm_3L | 21310897..21311010 | 17..130 | 100 | | Minus |
BS04828.complete Sequence
1205 bp (1205 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ635023
> BS04828.complete
GAAGTTATCAGTCGACATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGT
TGGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCT
GAGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGT
CAAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAA
ACATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCC
TCCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGA
TCCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATG
TGGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCG
AAGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAA
GTCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATC
ATCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCC
TCCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAG
CAACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAG
CCGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCC
CCAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAG
CCAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCG
AGGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACA
GAAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGT
AGCCAACGAGGAAGGCAACCAACAGGCGCCACAGGTTCCTTCCGAGAACA
ATAACATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCG
CTTACTCCTCTTTCGCCGCGTGCCCTTCCGCCGCGCTTCTGGCTGCCGGC
CAAATGCAACATATCCAACCGGGTGGTGATCACAGACGTCACCGTAAACC
TGGAGACCGTTACCATACGCGAGTGCAAGACGGAGCGCGGGTTTTTTCGT
GAGCGCGACATGAAAGGCGATTCGTCGCCAGTAGCTTGAAAGCTTTCTAG
ACCAT
BS04828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 1173 | CG32443-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-RA | 2462 | CG32443-RA | 111..1283 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21316424..21317484 | 1189..129 | 5305 | 100 | Minus |
| 3L | 28110227 | 3L | 21317796..21317910 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:22 has no hits.
BS04828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:03 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:59 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 67..1248 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:50 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1282 | 17..1188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:03 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 67..1248 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:12 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pc-RA | 111..1282 | 17..1188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:12 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21316425..21317482 | 131..1188 | 100 | <- | Minus |
| 3L | 21317797..21317910 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:50 Download gff for
BS04828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21309525..21310582 | 131..1188 | 100 | <- | Minus |
| arm_3L | 21310897..21311010 | 17..130 | 100 | | Minus |
BS04828.pep Sequence
Translation from 16 to 1188
> BS04828.pep
MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW
NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES
EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS
GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS
EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF
QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG
NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS
NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVA*
BS04828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pc-PA | 390 | CG32443-PA | 1..390 | 1..390 | 2075 | 100 | Plus |
| Su(var)205-PB | 206 | CG8409-PB | 24..115 | 26..131 | 159 | 34.9 | Plus |
| Su(var)205-PA | 206 | CG8409-PA | 24..115 | 26..131 | 159 | 34.9 | Plus |
| dikar-PG | 3080 | CG42799-PG | 401..625 | 88..315 | 156 | 23.2 | Plus |
| dikar-PC | 3080 | CG42799-PC | 401..625 | 88..315 | 156 | 23.2 | Plus |
