Clone BS04829 Report

Search the DGRC for BS04829

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptelB-RC
Protein status:BS04829.pep: full length peptide match
Sequenced Size:1691

Clone Sequence Records

BS04829.3prime Sequence

925 bp (830 high quality bases) assembled on 2005-12-02

> BS04829.3prime
ATGGTCTCGAAAGCTTCTACGGATGCGAAGATCCCATCCTGGGACCGTAT
AACGAGTACGGTGCAAAATATTGGGCCAGCGCCGGATGTGGCGGCAGTCC
GGGCATTCCGGGTGGCGCCAACGAGGGCGGCAGCATCGATGGCTTACCGT
ACGGATGATAACGGGCCGCCGACAGCGGACTCAGCGGCGGGGTGGGATAG
GTGCGCTGGAAAAGCGGATGATTGGGCGGTATACCGCCGGCGGCCGCTGC
ACTCAGTACTGCGTCCGGAACGGAGGCCGTATGGGTGCGCAGATGCTGGA
ACAGGTCGTCGGAGGTGCCGAATCGCTTGCCACAGTACGCGGCATCGCTG
CCGATCCACGAGCAGACGTACGGCATCTGGGAGGCAGCGGCCAGGGCGGC
CAACTGGGCGTGGTACGAGGAGGCAGCTGCCGCCGCCGCCGCTGCTGCCG
CACTCGATGAACCACCCGATCCGCCTTGGCTTCCGCTGGATTTGGATGAA
CCACCTCCGCCGCCTCCACCTCCCTCGCACTGCGGACATCCCGCCGGACA
CGGCTGACCTGCCGCCTTGTTTATGTAGTGCGGACTGGCCGGACATCCGG
TGCAATAGGGATCGCGGCACACATTCGGCGTGGCCGCCATCATCGACTGC
TCCGTCAGCCCCTTCATTCGGGCGTAGTTCAGATACGGATTCATCGCCGA
CGCCTTGAACATGGCGTGGTGTGGCGACATCAACGAGCTGGCGGTCATCA
AGTCCATGGAATAGGGGCTGCCGTAACCGGGTGGATAATAGGATGCAGCA
GCTGCTGCTGCTGAGGCGGATCCTTGCTGGCTGGCCGCGTGCAGAGCCTT
CACATAGTTGGCCTCCTTGGCGGCGGCGAGGGCGGCTTCCTGCANGCGAT
TCGAGCTGGCGATTTGGGCAGCCGC

BS04829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4220-PC 1659 elB-RC 751..1659 925..17 4526 99.8 Minus
CG4220-PA 2037 elB-RA 1276..2037 778..17 3810 100 Minus
CG4220-PB 2457 elB-RB 1276..1907 778..147 3160 100 Minus
CG4220-PA 2037 elB-RA 1069..1216 925..778 721 99.3 Minus
CG4220-PB 2457 elB-RB 1069..1216 925..778 721 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RD 3326 CG4220-RD 1867..2775 925..17 4534 99.9 Minus
elB-RC 3323 CG4220-RC 1864..2772 925..17 4534 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14391179..14391940 17..778 3810 100 Plus
2L 23513712 2L 14392228..14392377 776..925 739 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 10:17:46 has no hits.

BS04829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:11 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-PC 751..1659 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:44 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4220-PC 751..1659 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:53 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1864..2775 14..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:28 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1864..2775 14..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:28 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14391176..14391939 14..777 99 <- Plus
2L 14392230..14392377 778..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:53 Download gff for BS04829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14392230..14392377 778..925 99   Plus
arm_2L 14391176..14391939 14..777 99 <- Plus

BS04829.5prime Sequence

964 bp (774 high quality bases) assembled on 2005-12-02

> BS04829.5prime
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATG

BS04829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4220-PC 1659 elB-RC 1..948 17..964 4740 100 Plus
CG4220-PA 2037 elB-RA 387..1216 85..914 4150 100 Plus
CG4220-PB 2457 elB-RB 387..1216 85..914 4150 100 Plus
CG4220-PA 2037 elB-RA 1276..1326 914..964 255 100 Plus
CG4220-PB 2457 elB-RB 1276..1326 914..964 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 3323 CG4220-RC 1114..2061 17..964 4740 100 Plus
elB-RD 3326 CG4220-RD 1114..2064 17..964 4700 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14392228..14393059 916..85 4160 100 Minus
2L 23513712 2L 14408368..14408436 85..17 345 100 Minus
2L 23513712 2L 14391890..14391940 964..914 255 100 Minus
Blast to na_te.dros performed 2015-02-10 22:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2512 322..494 132 57.5 Plus

BS04829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:12 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-PC 1..948 17..964 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:46 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4220-PC 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:51:00 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2061 17..964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:04 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2061 17..964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:04 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14391890..14391939 915..964 100 <- Minus
2L 14392230..14393058 86..914 100 <- Minus
2L 14408368..14408436 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:51:00 Download gff for BS04829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14391890..14391939 915..964 100 <- Minus
arm_2L 14392230..14393058 86..914 100 <- Minus
arm_2L 14408368..14408436 17..85 100   Minus

BS04829.complete Sequence

1691 bp assembled on 2008-08-14

GenBank Submission: KX796294

> BS04829.complete
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATGTCGCCACACCACGCCATGTTCAAGGCGTCGGCGATG
AATCCGTATCTGAACTACGCCCGAATGAAGGGGCTGACGGAGCAGTCGAT
GATGGCGGCCACGCCGAATGTGTGCCGCGATCCCTATTGCACCGGATGTC
CGGCCAGTCCGCACTACATAAACAAGGCGGCAGGTCAGCCGTGTCCGGCG
GGATGTCCGCAGTGCGAGGGAGGTGGAGGCGGCGGAGGTGGTTCATCCAA
ATCCAGCGGAAGCCAAGGCGGATCGGGTGGTTCATCGAGTGCGGCAGCAG
CGGCGGCGGCGGCAGCTGCCTCCTCGTACCACGCCCAGTTGGCCGCCCTG
GCCGCTGCCTCCCAGATGCCGTACGTCTGCTCGTGGATCGGCAGCGATGC
CGCGTACTGTGGCAAGCGATTCGGCACCTCCGACGACCTGTTCCAGCATC
TGCGCACCCATACGGCCTCCGTTCCGGACGCAGTACTGAGTGCAGCGGCC
GCCGGCGGTATACCGCCCAATCATCCGCTTTTCCAGCGCACCTATCCCAC
CCCGCCGCTGAGTCCGCTGTCGGCGGCCCGTTATCATCCGTACGGTAAGC
CATCGATGCTGCCGCCCTCGTTGGCGCCACCCGGAATGCCCGGACTGCCG
CCACATCCGGCGCTGGCCCAATATTTTGCACCGTACTCGTTATACGGTCC
CAGGATGGGATCTTCGCATCCGTAGAAGCTTTCGAGACCAT

BS04829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 1659 CG4220-PC 1..1659 17..1675 8295 100 Plus
elB-RD 1662 CG4220-PD 1..1662 17..1675 8230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
elB-RC 3323 CG4220-RC 1114..2772 17..1675 8295 100 Plus
elB-RD 3326 CG4220-RD 1114..2775 17..1675 8230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14392228..14393059 916..85 4160 100 Minus
2L 23513712 2L 14391179..14391940 1675..914 3810 100 Minus
2L 23513712 2L 14408368..14408436 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:00:44 has no hits.

BS04829.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:10 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1112..2773 17..1678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:01 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2772 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:50 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1112..2770 17..1675 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:54 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
elB-RC 1114..2772 17..1675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:54 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14391179..14391939 915..1675 100 <- Minus
2L 14392230..14393058 86..914 100 <- Minus
2L 14408368..14408436 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:01 Download gff for BS04829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14391179..14391939 915..1675 100 <- Minus
arm_2L 14392230..14393058 86..914 100 <- Minus
arm_2L 14408368..14408436 17..85 100   Minus

BS04829.pep Sequence

Translation from 16 to 1674

> BS04829.pep
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HP*

BS04829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
elB-PC 552 CG4220-PC 1..552 1..552 2882 100 Plus
elB-PD 553 CG4220-PD 1..553 1..552 2870 99.8 Plus
noc-PB 537 CG4491-PB 15..536 6..551 662 35.5 Plus
noc-PA 537 CG4491-PA 15..536 6..551 662 35.5 Plus
Muc91C-PB 949 CG7709-PB 556..934 66..519 174 24.8 Plus