Clone Sequence Records
BS04829.3prime Sequence
925 bp (830 high quality bases) assembled on 2005-12-02
> BS04829.3prime
ATGGTCTCGAAAGCTTCTACGGATGCGAAGATCCCATCCTGGGACCGTAT
AACGAGTACGGTGCAAAATATTGGGCCAGCGCCGGATGTGGCGGCAGTCC
GGGCATTCCGGGTGGCGCCAACGAGGGCGGCAGCATCGATGGCTTACCGT
ACGGATGATAACGGGCCGCCGACAGCGGACTCAGCGGCGGGGTGGGATAG
GTGCGCTGGAAAAGCGGATGATTGGGCGGTATACCGCCGGCGGCCGCTGC
ACTCAGTACTGCGTCCGGAACGGAGGCCGTATGGGTGCGCAGATGCTGGA
ACAGGTCGTCGGAGGTGCCGAATCGCTTGCCACAGTACGCGGCATCGCTG
CCGATCCACGAGCAGACGTACGGCATCTGGGAGGCAGCGGCCAGGGCGGC
CAACTGGGCGTGGTACGAGGAGGCAGCTGCCGCCGCCGCCGCTGCTGCCG
CACTCGATGAACCACCCGATCCGCCTTGGCTTCCGCTGGATTTGGATGAA
CCACCTCCGCCGCCTCCACCTCCCTCGCACTGCGGACATCCCGCCGGACA
CGGCTGACCTGCCGCCTTGTTTATGTAGTGCGGACTGGCCGGACATCCGG
TGCAATAGGGATCGCGGCACACATTCGGCGTGGCCGCCATCATCGACTGC
TCCGTCAGCCCCTTCATTCGGGCGTAGTTCAGATACGGATTCATCGCCGA
CGCCTTGAACATGGCGTGGTGTGGCGACATCAACGAGCTGGCGGTCATCA
AGTCCATGGAATAGGGGCTGCCGTAACCGGGTGGATAATAGGATGCAGCA
GCTGCTGCTGCTGAGGCGGATCCTTGCTGGCTGGCCGCGTGCAGAGCCTT
CACATAGTTGGCCTCCTTGGCGGCGGCGAGGGCGGCTTCCTGCANGCGAT
TCGAGCTGGCGATTTGGGCAGCCGC
BS04829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4220-PC | 1659 | elB-RC | 751..1659 | 925..17 | 4526 | 99.8 | Minus |
CG4220-PA | 2037 | elB-RA | 1276..2037 | 778..17 | 3810 | 100 | Minus |
CG4220-PB | 2457 | elB-RB | 1276..1907 | 778..147 | 3160 | 100 | Minus |
CG4220-PA | 2037 | elB-RA | 1069..1216 | 925..778 | 721 | 99.3 | Minus |
CG4220-PB | 2457 | elB-RB | 1069..1216 | 925..778 | 721 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RD | 3326 | CG4220-RD | 1867..2775 | 925..17 | 4534 | 99.9 | Minus |
elB-RC | 3323 | CG4220-RC | 1864..2772 | 925..17 | 4534 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14391179..14391940 | 17..778 | 3810 | 100 | Plus |
2L | 23513712 | 2L | 14392228..14392377 | 776..925 | 739 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:17:46 has no hits.
BS04829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:11 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-PC | 751..1659 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:44 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4220-PC | 751..1659 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:53 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1864..2775 | 14..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:28 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1864..2775 | 14..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:28 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14391176..14391939 | 14..777 | 99 | <- | Plus |
2L | 14392230..14392377 | 778..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:53 Download gff for
BS04829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14392230..14392377 | 778..925 | 99 | | Plus |
arm_2L | 14391176..14391939 | 14..777 | 99 | <- | Plus |
BS04829.5prime Sequence
964 bp (774 high quality bases) assembled on 2005-12-02
> BS04829.5prime
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATG
BS04829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4220-PC | 1659 | elB-RC | 1..948 | 17..964 | 4740 | 100 | Plus |
CG4220-PA | 2037 | elB-RA | 387..1216 | 85..914 | 4150 | 100 | Plus |
CG4220-PB | 2457 | elB-RB | 387..1216 | 85..914 | 4150 | 100 | Plus |
CG4220-PA | 2037 | elB-RA | 1276..1326 | 914..964 | 255 | 100 | Plus |
CG4220-PB | 2457 | elB-RB | 1276..1326 | 914..964 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 3323 | CG4220-RC | 1114..2061 | 17..964 | 4740 | 100 | Plus |
elB-RD | 3326 | CG4220-RD | 1114..2064 | 17..964 | 4700 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14392228..14393059 | 916..85 | 4160 | 100 | Minus |
2L | 23513712 | 2L | 14408368..14408436 | 85..17 | 345 | 100 | Minus |
2L | 23513712 | 2L | 14391890..14391940 | 964..914 | 255 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2512 | 322..494 | 132 | 57.5 | Plus |
BS04829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:12 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-PC | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:46 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4220-PC | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:51:00 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2061 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:04 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2061 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:04 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14391890..14391939 | 915..964 | 100 | <- | Minus |
2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
2L | 14408368..14408436 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:51:00 Download gff for
BS04829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14391890..14391939 | 915..964 | 100 | <- | Minus |
arm_2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
arm_2L | 14408368..14408436 | 17..85 | 100 | | Minus |
BS04829.complete Sequence
1691 bp assembled on 2008-08-14
GenBank Submission: KX796294
> BS04829.complete
GAAGTTATCAGTCGACATGCTGCAATCCAGCAATCATCATTATTTAAGAC
CGGATTATATGACAGCTGCAGCTGCCCCAACAGCGCTGGACAACAAAAGC
AGTCCGTTGGCGCTATTGGCCCAAACATGCAGCGCCATCGGGGCGGATAC
CACAAACCCCAAGCTGCTGGCGGCGAACATCGAGAAGTCCACAAAGCAAC
TGCAGCACCACCCAAAGGGCTCGAGTGGATCGGGTGGATCCGGCTCCTTT
GGCCTCAGCCAGCAGGCATCAATGGATGGCAGTGCACGCGATAAATCCTC
ACCGGTTAGCAGTCATTCATCCAGCGTTAGCACCGGTTCCGTGGAGCAGC
AGCAATTGCCCCCCGCCCATGGCAGCAGCAGCAGCAGCAAACCGACACCG
ACCACATTTAAGCCCTACGAGCCGAACAACAACATCAGCAATATAACCAC
AGCCGCCGATTGCGGCGCCACAAATCTCAGTAGCAACAACACCAGTGCCC
AGCAGCGGGTTAAGACCCCCAAATCGATGACGAACGGCGGTGGCCAGCGT
TGCGACTCGAACCAAAGTGCCAGCTCGCAGCACCGGGAATCGCCGACAGC
AGCCGGCTCACTGAGAAGGACCCCCACCTCGGGCCTGGCTGGTGGTGTGA
TGCAGCATAATGGCAGTCCCGGCCTGCCGCCAACCGCCTCCACCACGCCC
GGTCGCAGCAACTCCAAAGAGTCGGCCGCCATGCACAGTCCCAGTGCAGC
GGCAGCGGCAGCGGCGGCGGCTGCCCAAATCGCCAGCTCGAATCGCCTGC
AGGAAGCCGCCCTCGCCGCCGCCAAGGAGGCCAACTATGTGAAGGCTCTG
CACGCGGCCAGCCAGCAAGGATCCGCCTCAGCAGCAGCAGCTGCTGCATC
CTATTATCCACCCGGTTACGGCAGCCCCTATTCCATGGACTTGATGACCG
CCAGCTCGTTGATGTCGCCACACCACGCCATGTTCAAGGCGTCGGCGATG
AATCCGTATCTGAACTACGCCCGAATGAAGGGGCTGACGGAGCAGTCGAT
GATGGCGGCCACGCCGAATGTGTGCCGCGATCCCTATTGCACCGGATGTC
CGGCCAGTCCGCACTACATAAACAAGGCGGCAGGTCAGCCGTGTCCGGCG
GGATGTCCGCAGTGCGAGGGAGGTGGAGGCGGCGGAGGTGGTTCATCCAA
ATCCAGCGGAAGCCAAGGCGGATCGGGTGGTTCATCGAGTGCGGCAGCAG
CGGCGGCGGCGGCAGCTGCCTCCTCGTACCACGCCCAGTTGGCCGCCCTG
GCCGCTGCCTCCCAGATGCCGTACGTCTGCTCGTGGATCGGCAGCGATGC
CGCGTACTGTGGCAAGCGATTCGGCACCTCCGACGACCTGTTCCAGCATC
TGCGCACCCATACGGCCTCCGTTCCGGACGCAGTACTGAGTGCAGCGGCC
GCCGGCGGTATACCGCCCAATCATCCGCTTTTCCAGCGCACCTATCCCAC
CCCGCCGCTGAGTCCGCTGTCGGCGGCCCGTTATCATCCGTACGGTAAGC
CATCGATGCTGCCGCCCTCGTTGGCGCCACCCGGAATGCCCGGACTGCCG
CCACATCCGGCGCTGGCCCAATATTTTGCACCGTACTCGTTATACGGTCC
CAGGATGGGATCTTCGCATCCGTAGAAGCTTTCGAGACCAT
BS04829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 1659 | CG4220-PC | 1..1659 | 17..1675 | 8295 | 100 | Plus |
elB-RD | 1662 | CG4220-PD | 1..1662 | 17..1675 | 8230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-RC | 3323 | CG4220-RC | 1114..2772 | 17..1675 | 8295 | 100 | Plus |
elB-RD | 3326 | CG4220-RD | 1114..2775 | 17..1675 | 8230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14392228..14393059 | 916..85 | 4160 | 100 | Minus |
2L | 23513712 | 2L | 14391179..14391940 | 1675..914 | 3810 | 100 | Minus |
2L | 23513712 | 2L | 14408368..14408436 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:00:44 has no hits.
BS04829.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:10 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1112..2773 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:01 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2772 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:50 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1112..2770 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:54 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elB-RC | 1114..2772 | 17..1675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:54 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14391179..14391939 | 915..1675 | 100 | <- | Minus |
2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
2L | 14408368..14408436 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:01 Download gff for
BS04829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14391179..14391939 | 915..1675 | 100 | <- | Minus |
arm_2L | 14392230..14393058 | 86..914 | 100 | <- | Minus |
arm_2L | 14408368..14408436 | 17..85 | 100 | | Minus |
BS04829.pep Sequence
Translation from 16 to 1674
> BS04829.pep
MLQSSNHHYLRPDYMTAAAAPTALDNKSSPLALLAQTCSAIGADTTNPKL
LAANIEKSTKQLQHHPKGSSGSGGSGSFGLSQQASMDGSARDKSSPVSSH
SSSVSTGSVEQQQLPPAHGSSSSSKPTPTTFKPYEPNNNISNITTAADCG
ATNLSSNNTSAQQRVKTPKSMTNGGGQRCDSNQSASSQHRESPTAAGSLR
RTPTSGLAGGVMQHNGSPGLPPTASTTPGRSNSKESAAMHSPSAAAAAAA
AAAQIASSNRLQEAALAAAKEANYVKALHAASQQGSASAAAAAASYYPPG
YGSPYSMDLMTASSLMSPHHAMFKASAMNPYLNYARMKGLTEQSMMAATP
NVCRDPYCTGCPASPHYINKAAGQPCPAGCPQCEGGGGGGGGSSKSSGSQ
GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQMPYVCSWIGSDAAYCGK
RFGTSDDLFQHLRTHTASVPDAVLSAAAAGGIPPNHPLFQRTYPTPPLSP
LSAARYHPYGKPSMLPPSLAPPGMPGLPPHPALAQYFAPYSLYGPRMGSS
HP*
BS04829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elB-PC | 552 | CG4220-PC | 1..552 | 1..552 | 2882 | 100 | Plus |
elB-PD | 553 | CG4220-PD | 1..553 | 1..552 | 2870 | 99.8 | Plus |
noc-PB | 537 | CG4491-PB | 15..536 | 6..551 | 662 | 35.5 | Plus |
noc-PA | 537 | CG4491-PA | 15..536 | 6..551 | 662 | 35.5 | Plus |
Muc91C-PB | 949 | CG7709-PB | 556..934 | 66..519 | 174 | 24.8 | Plus |