Clone Sequence Records
BS04830.3prime Sequence
946 bp (751 high quality bases) assembled on 2005-12-02
> BS04830.3prime
ATGGTCTAGAAAGCTTCTAATGCTCCGAGCTGAAGTACGAGTTCTGCATG
AGATACAGCTTGTCGATGGGGTTTATCAGGCTGTTGTTCAGGTTGGCCAG
CATGTCGTGGGGATTCGAGTGGGAGTGCGAGTGCTGGTTGCCCGACGAGC
TGGTGGACTGCAGCTCCAGGTTGTTCAGCGACAGCGAGTCCGCATCGTCA
TCCAACTGGTCAAAGTTGCTCCCATCCAGCGAGAGGTCCGAGCTGCAGAA
GCTGTCATTCGAGTTGGCCGGATAGTCATCCGGTGAGAAGGGCAAATTGG
GATTCAGCGGCTGGCTGGCGAAAGTGCTGTCCAATCCACCCAAATAACCG
GAGCTATCTCCTCCGAGCTCCTGCTTGACGCACTTGTCCTCCTTGTCATT
GGTGTCCTTATCGTCGGTGGCGCTGGAATTGCCCGTGCCACGCCCACTGC
CCGATCCTCCGCCGGAGCCACCATTCTGCTTGGCCTTGCGCTGAATCTTC
TTCATCTTGGCGCGCTGATTTTGGAACCACACCTGCACTACACGAACCGA
TAGGCCGGTGTCCTTGGCCAGGGCTTCGCGCACTTTGCGACATGGTTTGG
GTGACTGATCGAAGGAGGCCTTAAACTGTTTGCGCTGCTGCGATGTGAGG
ATGGTGCGTGGTCGTTTCGGACCTCTCCTTCCATCCCGTGGCCTCAGCAA
ATCCTCCTCGTCCAGGCCAACGAACCCACAGTGCTGAGCAGCAGCGGCTG
CCAGAAACATCTCCTTCTCCAGATCGTGACGATAGCAGAAGAGCTGGCCA
TCGCGCAGCATGAACTGCTCGCCCTTCTGGAGCGGCAATCGGCAGGCGTA
GCAAACGAAGCAGGGCAGGTGGAAGACAAAGTTCGGTATGGGTCGCATTA
CCAGCTCCTGCGGCAGGATCGCATGGCAGCAGGAGGAGCACTTCAC
BS04830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-PB | 1923 | CG32105-RB | 994..1923 | 946..17 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-RC | 2640 | CG32105-RC | 1229..2159 | 946..16 | 4655 | 100 | Minus |
| CG32105-RB | 2643 | CG32105-RB | 1232..2162 | 946..16 | 4655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12334416..12335085 | 946..277 | 3350 | 100 | Minus |
| 3L | 28110227 | 3L | 12335159..12335420 | 277..16 | 1310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:17:28 has no hits.
BS04830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:13 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-PB | 994..1923 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:47 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-PB | 994..1923 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:05:50 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 1232..2162 | 16..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:31 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 1232..2162 | 16..946 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:31 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12335160..12335420 | 16..276 | 100 | | Minus |
| 3L | 12334416..12335085 | 277..946 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:05:50 Download gff for
BS04830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12327516..12328185 | 277..946 | 100 | -> | Minus |
| arm_3L | 12328260..12328520 | 16..276 | 100 | | Minus |
BS04830.5prime Sequence
977 bp (854 high quality bases) assembled on 2005-12-02
> BS04830.5prime
GAAGTTATCAGTCGACATGCTGGAGTTCTACCCAATGCCCACGAATCTGA
ATCCAGTCGGTGGCAGTTTGTACTCGCTGCAGCAGAATCATGGCGGCGCG
CGATTCCTGGACAATCCAAATCCCGGCAGCATGACTGCCAGCAGCGGCAA
CTCCCTGCATCTTAGCAATAGCAACAACAATCTGCCAACAAGCATTTCCG
GCAACAATAGTCCCACGGCAACGGCTTCATTAACGGGGCAGCATCAGCAG
CACCAGCAGCAGCAACATCAGCAGCAGCAGCAACACCCCCACCAGCAACA
TCAGCAACACCAGCAGCAACACGCTGCCTCGACCACGCCAGTGCCAATTA
ACAGCTGCCCCACGCCCACAGGACACAGCCCCCTCAGCAGCAGCAGCAGC
AACAGCAACCACAACAATAACAACAACAACAACAACGGGGGCAGCAGCAG
CAACAACCTCCACTCAGCCTGCAACACATTAACAGCTGCTGCTGTTGCCG
CTGCCTCTGCCGCTGCTGTGGCAGCTCCATCGCCAGCAGGCACCTCAGTA
GCCACCTCGCAATTAGGCGGAGCAGTTGCTGCGGCGATTGCTGCTGCTGC
TGCGGCGGCTGCCGCTGCGACGACACCCACATCGACGGGCCCAGCGGCCA
CAGGAAGCGGAAATGCAAATGGCAGTGGCAACGGAAACGGAAATGGCAAT
GGCAATGGAAACGGGAATGGAAATGGGAATGGAGGTGGTGCAGCAACGGC
ATCGGCAGCAGCGGCATCCAAATTGTCTGCCGATTGCAGCGGACGCACAG
AAGTGGGCCACATCAAGTGCGAGAAGAACTTCGAGCTGTGCGAGGGCTGT
GGCCAGAAGATCCATGAACGATTCCTGATGAACGTGGGCGATGCCCACTG
GCACGAGCAGTGCCTGGGCTGCTGCTACTGCGGAATGCAGCTGCACCACA
CCTGCTACGTGCGCAACTCGAAACTCT
BS04830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-PB | 1923 | CG32105-RB | 1..961 | 17..977 | 4730 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-RB | 2643 | CG32105-RB | 239..1199 | 17..977 | 4760 | 99.7 | Plus |
| CG32105-RC | 2640 | CG32105-RC | 239..1196 | 17..977 | 4705 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12329470..12330253 | 17..800 | 3920 | 100 | Plus |
| 3L | 28110227 | 3L | 12334204..12334383 | 798..977 | 855 | 98.3 | Plus |
Blast to na_te.dros performed 2015-02-12 05:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6866 | 618..482 | 148 | 59.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2378 | 526..483 | 130 | 77.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6764 | 526..485 | 129 | 78.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1093 | 532..483 | 128 | 76 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1138 | 539..483 | 123 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6785 | 528..485 | 121 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6818 | 526..485 | 120 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2357 | 528..483 | 113 | 71.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1124 | 526..485 | 111 | 73.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1145 | 526..485 | 111 | 73.8 | Minus |
BS04830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:14 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-PB | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:48 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-PB | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:17:28 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 230..1199 | 8..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:51 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 230..1199 | 8..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:51 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12334207..12334383 | 801..977 | 98 | | Plus |
| 3L | 12329461..12330253 | 8..800 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:17:28 Download gff for
BS04830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12322561..12323353 | 8..800 | 99 | -> | Plus |
| arm_3L | 12327307..12327483 | 801..977 | 98 | | Plus |
BS04830.complete Sequence
1955 bp assembled on 2008-08-15
GenBank Submission: KX796405
> BS04830.complete
GAAGTTATCAGTCGACATGCTGGAGTTCTACCCAATGCCCACGAATCTGA
ATCCAGTCGGTGGCAGTTTGTACTCGCTGCAGCAGAATCATGGCGGCGCG
CGATTCCTGGACAATCCAAATCCCGGCAGCATGACTGCCAGCAGCGGCAA
CTCCCTGCATCTTAGCAATAGCAACAACAATCTGCCAACAAGCATTTCCG
GCAACAATAGTCCCACGGCAACGGCTTCATTAACGGGGCAGCATCAGCAG
CACCAGCAGCAGCAACATCAGCAGCAGCAGCAACACCCCCACCAGCAACA
TCAGCAACACCAGCAGCAACACGCTGCCTCGACCACGCCAGTGCCAATTA
ACAGCTGCCCCACGCCCACAGGACACAGCCCCCTCAGCAGCAGCAGCAGC
AACAGCAACCACAACAATAACAACAACAACAACAACGGGGGCAGCAGCAG
CAACAACCTCCACTCAGCCTGCAACACATTAACAGCTGCTGCTGTTGCCG
CTGCCTCTGCCGCTGCTGTGGCAGCTCCATCGCCAGCAGGCACCTCAGTA
GCCACCTCGCAATTAGGCGGAGCAGTTGCTGCGGCGATTGCTGCTGCTGC
TGCGGCGGCTGCCGCTGCGACGACACCCACATCGACGGGCCCAGCGGCCA
CAGGAAGCGGAAATGCAAATGGCAGTGGCAACGGAAACGGAAATGGCAAT
GGCAATGGAAACGGGAATGGAAATGGGAATGGAGGTGGTGCAGCAACGGC
ATCGGCAGCAGCGGCATCCAAATTGTCTGCCGATTGCAGCGGACGCACAG
AAGTGGGCCACATCAAGTGCGAGAAGAACTTCGAGCTGTGCGAGGGCTGT
GGCCAGAAGATCCATGACCGATTCCTGATGAACGTGGGCGATGCCAACTG
GCACGAGCAGTGCCTGGCCTGCTGCTACTGCGGAATGCAGCTGCACCACA
CCTGCTACGTGCGCAACTCGAAACTCTATTGCAAGATGGACTACGACCGG
CTGTTCGGTGTGAAGTGCTCCTCCTGCTGCCATGCGATCCTGCCGCAGGA
GCTGGTAATGCGACCCATACCGAACTTTGTCTTCCACCTGCCCTGCTTCG
TTTGCTACGCCTGCCGATTGCCGCTCCAGAAGGGCGAGCAGTTCATGCTG
CGCGATGGCCAGCTCTTCTGCTATCGTCACGATCTGGAGAAGGAGATGTT
TCTGGCAGCCGCTGCTGCTCAGCACTGTGGGTTCGTTGGCCTGGACGAGG
AGGATTTGCTGAGGCCACGGGATGGAAGGAGAGGTCCGAAACGACCACGC
ACCATCCTCACATCGCAGCAGCGCAAACAGTTTAAGGCCTCCTTCGATCA
GTCACCCAAACCATGTCGCAAAGTGCGCGAAGCCCTGGCCAAGGACACCG
GCCTATCGGTTCGTGTAGTGCAGGTGTGGTTCCAAAATCAGCGCGCCAAG
ATGAAGAAGATTCAGCGCAAGGCCAAGCAGAATGGTGGCTCCGGCGGAGG
ATCGGGCAGTGGGCGTGGCACGGGCAATTCCAGCGCCACCGACGATAAGG
ACACCAATGACAAGGAGGACAAGTGCGTCAAGCAGGAGCTCGGAGGAGAT
AGCTCCGGTTATTTGGGTGGATTGGACAGCACTTTCGCCAGCCAGCCGCT
GAATCCCAATTTGCCCTTCTCACCGGATGACTATCCGGCCAACTCGAATG
ACAGCTTCTGCAGCTCGGACCTCTCGCTGGATGGGAGCAACTTTGACCAG
TTGGATGACGATGCGGACTCGCTGTCGCTGAACAACCTGGAGCTGCAGTC
CACCAGCTCGTCGGGCAACCAGCACTCGCACTCCCACTCGAATCCCCACG
ACATGCTGGCCAACCTGAACAACAGCCTGATAAACCCCATCGACAAGCTG
TATCTCATGCAGAACTCGTACTTCAGCTCGGAGCATTAGAAGCTTTCTAG
ACCAT
BS04830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-RB | 1923 | CG32105-PB | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| CG32105-RC | 1920 | CG32105-PC | 1..1920 | 17..1939 | 9535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-RB | 2643 | CG32105-RB | 239..2162 | 17..1940 | 9620 | 100 | Plus |
| CG32105-RC | 2640 | CG32105-RC | 239..2159 | 17..1940 | 9540 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12334204..12335085 | 798..1679 | 4410 | 100 | Plus |
| 3L | 28110227 | 3L | 12329470..12330253 | 17..800 | 3920 | 100 | Plus |
| 3L | 28110227 | 3L | 12335159..12335420 | 1679..1940 | 1310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6866 | 618..482 | 148 | 59.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2378 | 526..483 | 130 | 77.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6764 | 526..485 | 129 | 78.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1093 | 532..483 | 128 | 76 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1138 | 539..483 | 123 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6785 | 528..485 | 121 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6818 | 526..485 | 120 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2357 | 528..483 | 113 | 71.7 | Minus |
BS04830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:03 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 226..2158 | 8..1940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:17 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 239..2161 | 17..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:13 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 235..2157 | 17..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:53 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32105-RB | 239..2161 | 17..1939 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:53 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12329470..12330253 | 17..800 | 100 | -> | Plus |
| 3L | 12334207..12335085 | 801..1679 | 100 | -> | Plus |
| 3L | 12335160..12335419 | 1680..1939 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:17 Download gff for
BS04830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12322570..12323353 | 17..800 | 100 | -> | Plus |
| arm_3L | 12327307..12328185 | 801..1679 | 100 | -> | Plus |
| arm_3L | 12328260..12328519 | 1680..1939 | 100 | | Plus |
BS04830.pep Sequence
Translation from 16 to 1938
> BS04830.pep
MLEFYPMPTNLNPVGGSLYSLQQNHGGARFLDNPNPGSMTASSGNSLHLS
NSNNNLPTSISGNNSPTATASLTGQHQQHQQQQHQQQQQHPHQQHQQHQQ
QHAASTTPVPINSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSSSNNLHS
ACNTLTAAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAA
ATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASAAAA
SKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCL
ACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRP
IPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAA
AQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPC
RKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGR
GTGNSSATDDKDTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLP
FSPDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSLNNLELQSTSSSG
NQHSHSHSNPHDMLANLNNSLINPIDKLYLMQNSYFSSEH*
BS04830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32105-PB | 640 | CG32105-PB | 1..640 | 1..640 | 3430 | 100 | Plus |
| CG32105-PC | 639 | CG32105-PC | 1..639 | 1..640 | 3413 | 99.8 | Plus |
| CG4328-PB | 544 | CG4328-PB | 50..528 | 154..639 | 675 | 36.4 | Plus |
| Lim3-PE | 405 | CG10699-PE | 7..333 | 275..613 | 436 | 33.8 | Plus |
| Lim3-PA | 440 | CG10699-PA | 42..368 | 275..613 | 436 | 33.8 | Plus |
