Clone BS04831 Report

Search the DGRC for BS04831

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptMlp60A-RE
Protein status:BS04831.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04831.3prime Sequence

309 bp (308 high quality bases) assembled on 2005-12-02

> BS04831.3prime
ATGGTCTAGAAAGCTTTTACTCTCTGTTTAAGTGGGCGCCAGTGTCCGTG
GACAGGCAGCCGGCACCACCACCGAAACCGTATCCCTTGGGACCGTATTT
GCGACCATGGCAGTTTTTGCAGAAAAGCTCCTTCTCGTGCTCCGTGCAGT
TGGTCGAGTCCAGGGCCTTGTTGCACATGCTGCACTTGAAGCAGGTCTTG
TGGAATTTGTAGCCTCCGGCAACGCGCTCCTCGGCAGCGTAGACCGACTT
GCCGCACGCGGGGCACTTGGGGGTTTCAACGGGAACGAAAGGCATGTCGA
CTGATAACT

BS04831.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33149-PA 279 Mlp60A-RA 1..279 295..17 1395 100 Minus
CG1019-PA 1488 Mlp84B-RA 93..165 206..134 190 90.4 Minus
CG1019-PB 1488 Mlp84B-RB 93..165 206..134 190 90.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..361 295..17 1395 100 Minus
Mlp60A-RF 670 CG42309-RF 50..328 295..17 1395 100 Minus
Mlp60A-RC 2468 CG42309-RC 493..767 295..21 1375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075612 180..17 820 100 Minus
2R 25286936 2R 24075223..24075338 295..180 580 100 Minus
3R 32079331 3R 7115504..7115734 43..273 420 78.8 Plus
Blast to na_te.dros performed on 2015-02-01 09:07:57 has no hits.

BS04831.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:15 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..295 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:50 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..295 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:58 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 73..361 17..304 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:50 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 40..328 17..304 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:50 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24075213..24075337 181..304 97 -> Minus
2R 24075449..24075612 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:58 Download gff for BS04831.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962736..19962860 181..304 97 -> Minus
arm_2R 19962972..19963135 17..180 100   Minus

BS04831.5prime Sequence

309 bp (308 high quality bases) assembled on 2005-12-02

> BS04831.5prime
GAAGTTATCAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCC
CCGCGTGCGGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGC
TACAAATTCCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCT
GGACTCGACCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACT
GCCATGGTCGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCC
GGCTGCCTGTCCACGGACACTGGCGCCCACTTAAACAGAGAGTAAAAGCT
TTCTAGACC

BS04831.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33149-PA 279 Mlp60A-RA 1..279 17..295 1395 100 Plus
CG1019-PA 1488 Mlp84B-RA 93..165 106..178 190 90.4 Plus
CG1019-PB 1488 Mlp84B-RB 93..165 106..178 190 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..361 17..295 1395 100 Plus
Mlp60A-RF 670 CG42309-RF 50..328 17..295 1395 100 Plus
Mlp60A-RC 2468 CG42309-RC 493..767 17..291 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075612 132..295 820 100 Plus
2R 25286936 2R 24075223..24075338 17..132 580 100 Plus
3R 32079331 3R 7115504..7115734 269..39 420 78.8 Minus
Blast to na_te.dros performed on 2015-02-12 01:21:28 has no hits.

BS04831.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:16 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..295 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:51 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33149-PA 1..279 17..295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:58:45 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 73..361 8..295 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:59 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 40..328 8..295 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:59 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24075213..24075337 8..131 97 -> Plus
2R 24075449..24075612 132..295 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:58:45 Download gff for BS04831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962736..19962860 8..131 97 -> Plus
arm_2R 19962972..19963135 132..295 100   Plus

BS04831.complete Sequence

311 bp (311 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ635024

> BS04831.complete
GAAGTTATCAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCC
CCGCGTGCGGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGC
TACAAATTCCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCT
GGACTCGACCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACT
GCCATGGTCGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCC
GGCTGCCTGTCCACGGACACTGGCGCCCACTTAAACAGAGAGTAAAAGCT
TTCTAGACCAT

BS04831.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 279 CG42309-PE 1..279 17..295 1395 100 Plus
Mlp60A-RF 279 CG42309-PF 1..279 17..295 1395 100 Plus
Mlp60A-RC 1461 CG42309-PC 1..275 17..291 1375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-RE 440 CG42309-RE 83..361 17..295 1395 100 Plus
Mlp60A-RF 670 CG42309-RF 50..328 17..295 1395 100 Plus
Mlp60A-RC 2468 CG42309-RC 493..767 17..291 1375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24075449..24075612 132..295 820 100 Plus
2R 25286936 2R 24075223..24075338 17..132 580 100 Plus
3R 32079331 3R 7115504..7115734 269..39 420 78.8 Minus
Blast to na_te.dros performed on 2014-11-27 19:41:18 has no hits.

BS04831.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:04 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 1..279 17..295 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:42 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 72..360 8..295 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:04 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 83..359 17..293 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:05 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RE 72..360 8..295 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:23 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp60A-RF 50..326 17..293 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:23 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24075223..24075337 17..131 100 -> Plus
2R 24075449..24075610 132..293 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:04 Download gff for BS04831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19962972..19963133 132..293 100   Plus
arm_2R 19962746..19962860 17..131 100 -> Plus

BS04831.pep Sequence

Translation from 16 to 294

> BS04831.pep
MPFVPVETPKCPACGKSVYAAEERVAGGYKFHKTCFKCSMCNKALDSTNC
TEHEKELFCKNCHGRKYGPKGYGFGGGAGCLSTDTGAHLNRE*

BS04831.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp60A-PE 92 CG33149-PA 1..92 1..92 530 100 Plus
Mlp60A-PF 92 CG42309-PF 1..92 1..92 530 100 Plus
Mlp60A-PC 486 CG42309-PC 1..92 1..92 530 100 Plus
Mlp60A-PB 486 CG42309-PB 1..92 1..92 530 100 Plus
Mlp84B-PC 495 CG1019-PC 4..93 3..92 410 76.7 Plus
Mlp60A-PC 486 CG42309-PC 213..287 11..84 206 48 Plus
Mlp60A-PB 486 CG42309-PB 213..287 11..84 206 48 Plus
Mlp60A-PC 486 CG42309-PC 96..174 2..76 203 45.6 Plus
Mlp60A-PB 486 CG42309-PB 96..174 2..76 203 45.6 Plus
Mlp60A-PC 486 CG42309-PC 412..484 11..82 180 45.2 Plus
Mlp60A-PB 486 CG42309-PB 412..484 11..82 180 45.2 Plus
Mlp60A-PC 486 CG42309-PC 299..390 2..84 173 35.9 Plus
Mlp60A-PB 486 CG42309-PB 299..390 2..84 173 35.9 Plus