Clone Sequence Records
BS04837.3prime Sequence
854 bp (820 high quality bases) assembled on 2005-12-02
> BS04837.3prime
ATGGTCTAGAAAGCTTCTAGGAGGCCTTGGCGAACTGAATGACCGAGCTC
ATTCGCATCACCTTGGACCCGGGTCCATCCCCGGCGCCAACGGAAGCGGC
ACCACCGGCGGCGGAGGTGCCATCTCCGCTAGCCTTCTCCGAATCCACCT
GACCGTCGTCGCCCTTGTTCATGTAGTGCTTGCGCTTGCGCAACGGCAGC
GTCATCACGTTCCGGTCGGCCATCATCAGGGAGTCGCTCTCCGGCGAGGA
GCTACGTTCCGGCGACTCCGTGCTGGAACGCAGGCCGATGGCCGCCTCCA
CGCGTCGCACAACGTCCGGATTGGGTAGAGCGGATTCATATTTGGGCACT
GGTGCATAGCCCTTGTGCAGCCCGTGGCGAGCGAGATCACCACGCTTGAA
GTGCTCGATCAGCACGGTGGCTTCATGGGTGTCATCGTAGTTAGCCGCTA
GATCGCTGACGTGCAGAGTGGGCACCTGTGGCTGGTGGCTTGGCGCCGGC
TGCTCCGTTGGGGGTAAGGAGCCGTGGCCGCGGCACAACTGCATCATTTG
CCAGGCGGCTGCGTGCACATCCTCATCCTGCACCTGGTCATCGTTGTCGT
CATGGCGACGCGCAATGCTGGCCGCTTCAAGCAGGGCAGGATTGATGGTT
AGACCAGCGGGTTGTGGCTGCAGTTCGAGTAGACTTGGCGGTGCCTGGTA
GTAGTCCACAGTGCTTTCTGGCAGCTGACCCTGGACCTGTTGCATGCTCA
AATCTGTGGGCTCCTCGTCTGCATAGGTGCTGTGGGCGGGCTGGGCGCTG
GACACGCCGCTGTCCCGGCTCAAGGCATCCGCCTCCATCTGGACGGGCAG
GTAG
BS04837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18783-PA | 2376 | Kr-h1-RA | 1539..2376 | 854..17 | 4190 | 100 | Minus |
| CG18783-PB | 2538 | Kr-h1-RB | 1701..2538 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 2389..3226 | 854..17 | 4190 | 100 | Minus |
| Kr-h1-RA | 4473 | CG45074-RA | 2694..3531 | 854..17 | 4190 | 100 | Minus |
| CG45075-RA | 4168 | CG45075-RA | 2389..3226 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6094635..6095153 | 854..336 | 2595 | 100 | Minus |
| 2L | 23513712 | 2L | 6095238..6095556 | 335..17 | 1595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:24 has no hits.
BS04837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:19 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-PB | 1701..2538 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:55 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18783-PB | 1701..2538 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:50:16 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RA | 3489..4326 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:20 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 2389..3226 | 17..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:20 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6094635..6095153 | 336..854 | 100 | -> | Minus |
| 2L | 6095238..6095556 | 17..335 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:50:16 Download gff for
BS04837.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6094635..6095153 | 336..854 | 100 | -> | Minus |
| arm_2L | 6095238..6095556 | 17..335 | 100 | | Minus |
BS04837.5prime Sequence
955 bp (815 high quality bases) assembled on 2005-12-02
> BS04837.5prime
GAAGTTATCAGTCGACATGACTGAAAGCAAGAATGATACAAAATCTTGGG
CACCCAAACAAATTTGGATTAAGGATGTTCTCAAGAAATCGGGCACGGAA
CTGCTCGATATATCCAAGAGTCCCGCAAAGGCTGTTGCCGTCAAAAAATC
GCCGGCGAAAGATTCAGCCACAACCAAAATGGTTTACTATTCCGCCAACC
AGCTGCTTATAAAAACGGAACAATCTAGTCAGGCGCAGTTCTGCCTCCAG
GTTCCGCCTCCACTAACAGCGACGACCACGAGCGTGGGCCTAGGAGTTCC
GCCATCCGGCGGCCAACAGGAGCACTTCGAGCTGCTGCAGACGCCGCAGC
AGCGACAAATGCAACTGCAGCTACAGGACCAGCACCAGCAGGAGCAGCAG
CAGTTTGTCAGCTACCAACTGGCCATCCAGCAGCATCAGAAGCAGCAACA
ACAGCAGCAACATGAAAGTATTACGAACGCAGCACCCACAGCAGCTCCAT
CAGCCCAGCGGATCAAGACAGAGCCCGTCGGCGGATTCCCAGCGTCGGCA
GCCGTGGTGTCGCAGGTGCGCAAGCCCAGCGCCAGCAAACCGCAATTCAA
GTGCGACCAGTGTGGCATGACCTTTGGCAGCAAGTCCGCCCACACCTCAC
ACACCAAGTCGCACTCGAAGAACCAAGATCTGTCGCTTAATGGCGCCTCT
GGAGCCGGCGTTGCTGCGCCCGTCTCAACCGCGGCCATCGAGCTCAATGA
TGCCGGTCTGCCGGTGGGCATTCCCAAGAGCCCCACCATCAAGCCGCTGG
CCAACGTGGCCGCCGGAGCAGATCCCTATCAGTGCAATGTTTGCCAGAAA
ACATTCGCCGTACCCGCCAGGCTGATCCGCCACTACCGCACCCACACTGG
TGAACGGCCATTCGAGTGCGAGTTCTGCCACAAGCTGTTCAGCGTGAAGG
AAAAA
BS04837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18783-PB | 2538 | Kr-h1-RB | 1..935 | 17..951 | 4675 | 100 | Plus |
| CG18783-PA | 2376 | Kr-h1-RA | 1..773 | 179..951 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 689..1623 | 17..951 | 4675 | 100 | Plus |
| CG45075-RA | 4168 | CG45075-RA | 689..1623 | 17..951 | 4675 | 100 | Plus |
| Kr-h1-RA | 4473 | CG45074-RA | 1138..1928 | 161..951 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6092993..6093707 | 160..874 | 3575 | 100 | Plus |
| 2L | 23513712 | 2L | 6092100..6092244 | 17..161 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 6093792..6093869 | 874..951 | 390 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6944 | 330..549 | 312 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2543 | 339..598 | 282 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6945 | 314..525 | 276 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2523 | 314..504 | 259 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 314..462 | 257 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6923 | 314..455 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6856 | 356..511 | 221 | 66.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1168 | 361..469 | 203 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1130 | 399..504 | 202 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 384..504 | 190 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6956 | 428..662 | 187 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1178 | 393..518 | 182 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 388..504 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1137 | 354..462 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2379 | 421..504 | 172 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2462 | 428..554 | 170 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 380..503 | 165 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 398..504 | 155 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2663 | 428..466 | 150 | 87.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2397 | 397..504 | 147 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1590 | 431..507 | 142 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 385..461 | 135 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1478..1582 | 354..462 | 128 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 429..492 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1589 | 428..488 | 121 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 428..458 | 119 | 87.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7585..7623 | 618..580 | 114 | 76.9 | Minus |
BS04837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:20 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-PB | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:56 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18783-PB | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:09:23 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 678..1617 | 10..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:18 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 683..1622 | 10..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:18 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6092094..6092244 | 10..161 | 98 | -> | Plus |
| 2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| 2L | 6093793..6093868 | 875..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:09:23 Download gff for
BS04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6092094..6092244 | 10..161 | 98 | -> | Plus |
| arm_2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| arm_2L | 6093793..6093868 | 875..950 | 100 | | Plus |
BS04837.complete Sequence
2570 bp assembled on 2010-05-10
GenBank Submission: KX800083
> BS04837.complete
GAAGTTATCAGTCGACATGACTGAAAGCAAGAATGATACAAAATCTTGGG
CACCCAAACAAATTTGGATTAAGGATGTTCTCAAGAAATCGGGCACGGAA
CTGCTCGATATATCCAAGAGTCCCGCAAAGGCTGTTGCCGTCAAAAAATC
GCCGGCGAAAGATTCAGCCACAACCAAAATGGTTTACTATTCCGCCAACC
AGCTGCTTATAAAAACGGAACAATCTAGTCAGGCGCAGTTCTGCCTCCAG
GTTCCGCCTCCACTAACAGCGACGACCACGAGCGTGGGCCTAGGAGTTCC
GCCATCCGGCGGCCAACAGGAGCACTTCGAGCTGCTGCAGACGCCGCAGC
AGCGACAAATGCAACTGCAGCTACAGGACCAGCACCAGCAGGAGCAGCAG
CAGTTTGTCAGCTACCAACTGGCCATCCAGCAGCATCAGAAGCAGCAACA
ACAGCAGCAACATGAAAGTATTACGAACGCAGCACCCACAGCAGCTCCAT
CAGCCCAGCGGATCAAGACAGAGCCCGTCGGCGGATTCCCAGCGTCGGCA
GCCGTGGTGTCGCAGGTGCGCAAGCCCAGCGCCAGCAAACCGCAATTCAA
GTGCGACCAGTGTGGCATGACCTTTGGCAGCAAGTCCGCCCACACCTCAC
ACACCAAGTCGCACTCGAAGAACCAAGATCTGTCGCTTAATGGCGCCTCT
GGAGCCGGCGTTGCTGCGCCCGTCTCAACCGCGGCCATCGAGCTCAATGA
TGCCGGTCTGCCGGTGGGCATTCCCAAGAGCCCCACCATCAAGCCGCTGG
CCAACGTGGCCGCCGGAGCAGATCCCTATCAGTGCAATGTTTGCCAGAAA
ACATTCGCCGTACCCGCCAGGCTGATCCGCCACTACCGCACCCACACTGG
TGAACGGCCATTCGAGTGCGAGTTCTGCCACAAGCTGTTCAGCGTGAAGG
AGAACCTCCAGGTGCACCGGCGCATCCACACGAAGGAGCGTCCGTACAAG
TGTGACGTCTGTGGACGGGCATTCGAACACTCCGGGAAGCTGCACCGCCA
CATGCGCATTCACACCGGCGAGCGGCCACACAAGTGCTCCGTGTGCGAGA
AGACATTCATCCAGTCCGGCCAGCTGGTGATCCATATGCGCACGCACACC
GGCGAGAAGCCGTACAAGTGCCCGGAGCCGGGATGCGGCAAAGGTTTCAC
CTGCTCCAAGCAGCTCAAGGTGCACTCGCGAACGCACACGGGCGAGAAGC
CCTACCACTGTGACATCTGCTTCCGGGACTTTGGCTACAATCATGTGCTG
AAACTGCATCGCGTCCAGCACTACGGCTCCAAGTGCTACAAGTGCACCAT
CTGCGACGAGACGTTCAAGAACAAGAAGGAGATGGAGGCCCACATCAAGG
GCCATGCCAACGAAGTACCCGACGACGAAGCGGAGGCGGCGGCTGCGTCG
GCAGCAGCATCAACGTCCGCAGGCTCCTCCGCCGGATCGCCGTCCTTGCA
AGGAGTCAGCAGCAACTCCGAGAGCAGCAACCACTCGCCGCCCAGCTCGC
CACCGGCCACAAAGAAACCTCGCCAGGCTCGCCAGCCGCGCGTTTCCAAA
ACCGTTGCAGCCACCCTTTCCATCCCTACCTCCTCGCCGCTCTCGCCCAG
CTCACTCAGCTCCACATACTCGCCATCGGCCAGCAGCATGGCCTCGCCAC
CACCCACATCGGCCCACTACCTGCCCGTCCAGATGGAGGCGGATGCCTTG
AGCCGGGACAGCGGCGTGTCCAGCGCCCAGCCCGCCCACAGCACCTATGC
AGACGAGGAGCCCACAGATTTGAGCATGCAACAGGTCCAGGGTCAGCTGC
CAGAAAGCACTGTGGACTACTACCAGGCACCGCCAAGTCTACTCGAACTG
CAGCCACAACCCGCTGGTCTAACCATCAATCCTGCCCTGCTTGAAGCGGC
CAGCATTGCGCGTCGCCATGACGACAACGATGACCAGGTGCAGGATGAGG
ATGTGCACGCAGCCGCCTGGCAAATGATGCAGTTGTGCCGCGGCCACGGC
TCCTTACCCCCAACGGAGCAGCCGGCGCCAAGCCACCAGCCACAGGTGCC
CACTCTGCACGTCAGCGATCTAGCGGCTAACTACGATGACACCCATGAAG
CCACCGTGCTGATCGAGCACTTCAAGCGTGGTGATCTCGCTCGCCACGGG
CTGCACAAGGGCTATGCACCAGTGCCCAAATATGAATCCGCTCTACCCAA
TCCGGACGTTGTGCGACGCGTGGAGGCGGCCATCGGCCTGCGTTCCAGCA
CGGAGTCGCCGGAACGTAGCTCCTCGCCGGAGAGCGACTCCCTGATGATG
GCCGACCGGAACGTGATGACGCTGCCGTTGCGCAAGCGCAAGCACTACAT
GAACAAGGGCGACGACGGTCAGGTGGATTCGGAGAAGGCTAGCGGAGATG
GCACCTCCGCCGCCGGTGGTGCCGCTTCCGTTGGCGCCGGGGATGGACCC
GGGTCCAAGGTGATGCGAATGAGCTCGGTCATTCAGTTCGCCAAGGCCTC
CTAGAAGCTTTCTAGACCAT
BS04837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 2538 | CG45074-PB | 1..2538 | 17..2554 | 12690 | 100 | Plus |
| Kr-h1-RA | 2376 | CG45074-PA | 1..2376 | 179..2554 | 11880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 689..3226 | 17..2554 | 12690 | 100 | Plus |
| CG45075-RA | 4168 | CG45075-RA | 689..3226 | 17..2554 | 12690 | 100 | Plus |
| Kr-h1-RA | 4473 | CG45074-RA | 1138..3531 | 161..2554 | 11970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6093792..6095153 | 874..2235 | 6810 | 100 | Plus |
| 2L | 23513712 | 2L | 6092993..6093707 | 160..874 | 3575 | 100 | Plus |
| 2L | 23513712 | 2L | 6095238..6095556 | 2236..2554 | 1595 | 100 | Plus |
| 2L | 23513712 | 2L | 6092100..6092244 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6944 | 330..549 | 312 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2543 | 339..598 | 282 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6945 | 314..525 | 276 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2523 | 314..504 | 259 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 314..462 | 257 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6923 | 314..455 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6856 | 356..511 | 221 | 66.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1168 | 361..469 | 203 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1130 | 399..504 | 202 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 384..504 | 190 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6956 | 428..662 | 187 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1178 | 393..518 | 182 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 388..504 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1137 | 354..462 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2379 | 421..504 | 172 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2462 | 428..554 | 170 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 380..503 | 165 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 398..504 | 155 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2663 | 428..466 | 150 | 87.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2397 | 397..504 | 147 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1590 | 431..507 | 142 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 385..461 | 135 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1478..1582 | 354..462 | 128 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 429..492 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1589 | 428..488 | 121 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 428..458 | 119 | 87.1 | Plus |
BS04837.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:40 Download gff for
BS04837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 684..3221 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:20 Download gff for
BS04837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 684..3221 | 17..2554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:50 Download gff for
BS04837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 689..3226 | 17..2554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:50 Download gff for
BS04837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6092100..6092244 | 17..161 | 100 | -> | Plus |
| 2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| 2L | 6093793..6095153 | 875..2235 | 100 | -> | Plus |
| 2L | 6095238..6095556 | 2236..2554 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:20 Download gff for
BS04837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6092100..6092244 | 17..161 | 100 | -> | Plus |
| arm_2L | 6092995..6093707 | 162..874 | 100 | -> | Plus |
| arm_2L | 6093793..6095153 | 875..2235 | 100 | -> | Plus |
| arm_2L | 6095238..6095556 | 2236..2554 | 100 | | Plus |
BS04837.pep Sequence
Translation from 16 to 2553
> BS04837.pep
MTESKNDTKSWAPKQIWIKDVLKKSGTELLDISKSPAKAVAVKKSPAKDS
ATTKMVYYSANQLLIKTEQSSQAQFCLQVPPPLTATTTSVGLGVPPSGGQ
QEHFELLQTPQQRQMQLQLQDQHQQEQQQFVSYQLAIQQHQKQQQQQQHE
SITNAAPTAAPSAQRIKTEPVGGFPASAAVVSQVRKPSASKPQFKCDQCG
MTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAAPVSTAAIELNDAGLPV
GIPKSPTIKPLANVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERPFE
CEFCHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHT
GERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGKGFTCSKQL
KVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETF
KNKKEMEAHIKGHANEVPDDEAEAAAASAAASTSAGSSAGSPSLQGVSSN
SESSNHSPPSSPPATKKPRQARQPRVSKTVAATLSIPTSSPLSPSSLSST
YSPSASSMASPPPTSAHYLPVQMEADALSRDSGVSSAQPAHSTYADEEPT
DLSMQQVQGQLPESTVDYYQAPPSLLELQPQPAGLTINPALLEAASIARR
HDDNDDQVQDEDVHAAAWQMMQLCRGHGSLPPTEQPAPSHQPQVPTLHVS
DLAANYDDTHEATVLIEHFKRGDLARHGLHKGYAPVPKYESALPNPDVVR
RVEAAIGLRSSTESPERSSSPESDSLMMADRNVMTLPLRKRKHYMNKGDD
GQVDSEKASGDGTSAAGGAASVGAGDGPGSKVMRMSSVIQFAKAS*
BS04837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-PB | 845 | CG45074-PB | 1..845 | 1..845 | 4440 | 100 | Plus |
| Kr-h1-PA | 791 | CG45074-PA | 1..791 | 55..845 | 4168 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 240..500 | 185..468 | 498 | 35.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 230..513 | 196..470 | 485 | 33 | Plus |
| Meics-PA | 583 | CG8474-PA | 242..525 | 196..470 | 485 | 33 | Plus |
| crol-PG | 878 | CG14938-PG | 286..856 | 174..704 | 434 | 25.1 | Plus |
| crol-PG | 878 | CG14938-PG | 398..866 | 174..651 | 410 | 24.4 | Plus |
| crol-PG | 878 | CG14938-PG | 14..416 | 79..468 | 405 | 27.7 | Plus |
| Meics-PB | 571 | CG8474-PB | 268..571 | 173..411 | 283 | 25.7 | Plus |
