Clone BS04842 Report

Search the DGRC for BS04842

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG18011-RA
Protein status:BS04842.pep: full length peptide match
Sequenced Size:2990

Clone Sequence Records

BS04842.3prime Sequence

938 bp (786 high quality bases) assembled on 2005-12-02

> BS04842.3prime
ATGGTCTAGAAAGCTTTTAATTCTGTGTGTCCTCATCTGGTATCTCGTCA
ATAAAATCGTCCGCCTCCTCGTCATCATCTTCCATCACTATGTCATCCCC
ATCTGCTTCCTCTATAAACTCATTATTTTCATTTAGGCGGCGCTTTTTAG
ATGTGGATGGCGCATCATCGGTGATGTATTCGTCCTCCTCAACCACATCC
TCCTGGAGCAAAATGATGCCATCGTGAATCTTTCGGACATGCACATTCAA
CTGGGAACTGTTTACAAAAGTCCGTCCACAGCCGCCGTCGAAATAGTCGC
GGCACGTGTATTTATCACCATGGGCTCGCTGCATGTGCGTCTTCAATCCT
TGACTGCGTCCAAACCTCTTTTTACACACGTTGCACTCGAACGCGAATCG
CTTGTAGTGCTGACCAAGAACATGAACAGAAAGGGACTTTTTGTTCCTGG
TGGTGAAACTGCACTGTTCGCAGCTGTAAGACTGCCCATGAAGCTTTTGA
TGAGCTTCCATTTCACTCTTGTGATAAAAGCCCTTTTGACAGACACTGCA
GGAATAGCGCTTCTTATTCGAATGCACCACATTGACATGAGTGTCATAAT
TTCGTCGGTTTTTGACGATTTTAAAGCACTCAGGACACTCTATTGGTTCA
TGCCAATAGGCATGGTGCTTGGCCAGAGCATCATGGCTTTTGTACGAAGA
ATTGCATAACGGACAAGTGACGTTGTCATTGTTATGACTCCTTGCCACAT
GAACAGACAAGGACATCTTTGACCGGCATTCCTTTAAGCAAAACTGGCAA
ACCCATTCCTGGGCAGACTTTGAACTCTTCTCGGCCTGCTTGCTCGCGGA
TTCGTGTGTGCGCCGCTTGTGTGTGTACAAGGAGTTCCAGTTCACGTAAG
ACTCTGTGCAGTTTTTCTGGTCGCACATGTAGTAAAAC

BS04842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 2958 CG18011-RA 2039..2958 936..17 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 2086..3005 936..17 4585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10145404..10145882 495..17 2395 100 Minus
2R 25286936 2R 10145116..10145349 727..494 1170 100 Minus
2R 25286936 2R 10144872..10145058 913..727 935 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:07:36 has no hits.

BS04842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:21 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 2036..2958 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:57 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 2036..2958 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:32:54 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 2083..3009 12..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:58:49 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 2083..3009 12..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:58:49 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10144784..10144809 914..938 92 -> Minus
2R 10144872..10145058 727..913 100 -> Minus
2R 10145117..10145349 494..726 100 -> Minus
2R 10145406..10145886 12..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:32:54 Download gff for BS04842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6032289..6032314 914..938 92 -> Minus
arm_2R 6032377..6032563 727..913 100 -> Minus
arm_2R 6032622..6032854 494..726 100 -> Minus
arm_2R 6032911..6033391 12..493 99   Minus

BS04842.5prime Sequence

938 bp (799 high quality bases) assembled on 2005-12-02

> BS04842.5prime
GAAGTTATCAGTCGACATGTCGGAAAACGCGAAAAACAATAGCTGCCTGC
ATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAG
TTTGGAATCGAACTGGGACTGCAGTCCCTGCTGTCCAGGCATTACCAGCT
CGAAGTGTCGCCCGATCCGCAGAAGCAGCAACTCCTGTGCGAAGTGTGTG
TCACCAATCTCATTCGCCTCTTTGACATCGATGAACTGGAAAGAGAACGG
GAAGCTGCGAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGA
CCCCATTATTATTACCGAGGTCCAGGCAACTCCACCAGCTGCGAAACCAG
CCAAGAAAACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTG
CCCATTATTCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGC
TGCTGCTTCCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAG
AGACGCCTTCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTT
TCTAAAGTAGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCT
GGACGAAGAGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGT
CCAGTGAAGCTGTCCAGGTCACAGAGGAAACAGAAGCCCCTGGCCAAATA
GTCATCCTAAACAGCGAGGCTGTGACAGACACCAATCCGGATGAGAATGT
TTACATATACGAGCATGAGGATGTTATGGATCCAAATTTGGACAATGTTA
AGGTAAAACCCATAAGTTGTTCGTCTAGATTGGTAGCTCAAGCTGAGGAA
AGTCAAAGCGATGATGACATCGACGAGGGAGAGACTAGCAATGTTGTTCT
GTTTAACTTTGTGGACATCAAAGAGAAGGATGAAGTTG

BS04842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 2958 CG18011-RA 1..922 17..938 4610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 48..969 17..938 4610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10142385..10143138 17..770 3770 100 Plus
2R 25286936 2R 10143192..10143348 770..926 785 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:14:32 has no hits.

BS04842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:22 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:22:58 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:10 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..969 17..938 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:37 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..969 17..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:37 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10142379..10143138 11..770 99 -> Plus
2R 10143193..10143348 771..926 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:10 Download gff for BS04842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6029884..6030643 11..770 99 -> Plus
arm_2R 6030698..6030853 771..926 100 -> Plus

BS04842.complete Sequence

2990 bp assembled on 2008-08-15

GenBank Submission: KX797186

> BS04842.complete
GAAGTTATCAGTCGACATGTCGGAAAACGCGAAAAACAATAGCTGCCTGC
ATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAG
TTTGGAATCGAACTGGGACTGCAGTCCCTGCTGTCCAGGCATTACCAGCT
CGAAGTGTCGCCCGATCCGCAGAAGCAGCAACTCCTGTGCGAAGTGTGTG
TCACCAATCTCATTCGCCTCTTTGACATCGATGAACTGGAAAGAGAACGG
GAAGCTGCGAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGA
CCCCATTATTATTACCGAGGTCCAGGCAACTCCACCAGCTGCGAAACCAG
CCAAGAAAACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTG
CCCATTATTCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGC
TGCTGCTTCCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAG
AGACGCCTTCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTT
TCTAAAGTAGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCT
GGACGAAGAGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGT
CCAGTGAAGCTGTCCAGGTCACAGAGGAAACAGAAGCCCCTGGCCAAATA
GTCATCCTAAACAGCGAGGCTGTGACAGACACCAATCCGGATGAGAATGT
TTACATATACGAGCATGAGGATGTTATGGATCCAAATTTGGACAATGTTA
AGGTAAAACCCATAAGTTGTTCGTCTAGATTGGTAGCTCAAGCTGAGGAA
AGTCAAAGCGATGATGACATCGACGAGGGAGAGACTAGCAATGTTGTTCT
GTTTAACTTTGTGGACATCAAAGAGAAGGATGAAGTTGATAATATTCCGG
AGTACTTGGCCACCGTGGTGAAGACGAGCTTTGAAAAGCTGACATTTCAG
TGGTGCACTGTGTGCAAGCACTGCTCTCTGAAATGTCCCACATTCGAGAG
CCTTTTTAGTCACTTGTCAAAGGCACACAAAAGCCGGAGAGATGTCTACG
AGTGTCCCATCGAAGGATGCAACAAGGAGTTGAAAGGTCGCAAATTCCTA
GCCATGCATCTTGTTTTGTTGCACGCGCCAGTGGCTGAAATTCCGATCTA
CGGCAGCTGTCCGGAATGTAAATTGACGTTCTCCAACATTCTGCAGTACA
ACAAGCATTCTTGCGCGCATGTAATAAAAAAGAAGCGAGGTTTTCGCTCT
TATTGTGAAATGTGTTCGCTGGAGTTTCCTTCCTGGAAGCGTTTTAATTT
CCACAGCCAGTTTCACTTAGAAAAGCACAGACCAAGAGCTTGCTTCGTCT
GTGACTATGCCACCACGAACATAGATGAACTTTTTCAGCATTTAAATTAT
TCTCATGAGCCAGTGGGCACCTTATTCTGCGACCTTTGCGACCGCACTTT
CCGGGACCCCTCCGTTTTTATGGAGCACAATAAGTCGCATGCCAATGTTA
GCAGCACGACCTACTCTTGCAGCGAATGTATGGCCAACTTTGAGTCGCGG
GGCCGGCTAAATGGACACATGAGAGCCATGCACGGCAGTGTAATAAGCTG
TGAACTTTGTTCCCGGGAATTTGCCACCGAAGCTACTTACAATATTCACA
TGAAGAAGCATCTGATCATCGAAAAAGATGTGCACGTGTGCAGCACCTGC
GGTCTATTAAGTGATAGCCGCGAAACCCTCCTAGCCCATGTAAATTCCGT
GAAGACAGCCTGTTTTGGCTCGAAGATAGACGTGGAACTCCTACGGGATG
CTTATGTGTGCGAGTACTGTTCCTCGTACTTCAAGGAAAAGGACTGTCTT
CAAGCCCATCGCGATTCCGGGGTACATAAAGATGGAGTGTTTTTGTGTCA
GCCCTGCGGCAAAGAATTCCCACATATGAAACTTTATCGCCATCACCTGC
GCAACTATCAACAACTTCGATCGGACTCAACACATCGCAGGCTAGAAATA
TGTGTTTACTACATGTGCGACCAGGAAAACTGCACAGAGTCTTACGTGAA
CTGGAACTCCTTGTACACACACAAGCGGCGCACACACGAATCCGCGAGCA
AGCAGGCCGAGAAGAGTTCAAAGTCTGCCCAGGAATGGGTTTGCCAGTTT
TGCTTAAAGGAATGCCGGTCAAAGATGTCCTTGTCTGTTCATGTGGCAAG
GAGTCATAACAATGACAACGTCACTTGTCCGTTATGCAATTCTTCGTACA
AAAGCCATGATGCTCTGGCCAAGCACCATGCCTATTGGCATGAACCAATA
GAGTGTCCTGAGTGCTTTAAAATCGTCAAAAACCGACGAAATTATGACAC
TCATGTCAATGTGGTGCATTCGAATAAGAAGCGCTATTCCTGCAGTGTCT
GTCAAAAGGGCTTTTATCACAAGAGTGAAATGGAAGCTCATCAAAAGCTT
CATGGGCAGTCTTACAGCTGCGAACAGTGCAGTTTCACCACCAGGAACAA
AAAGTCCCTTTCTGTTCATGTTCTTGGTCAGCACTACAAGCGATTCGCGT
TCGAGTGCAACGTGTGTAAAAAGAGGTTTGGACGCAGTCAAGGATTGAAG
ACGCACATGCAGCGAGCCCATGGTGATAAATACACGTGCCGCGACTATTT
CGACGGCGGCTGTGGACGGACTTTTGTAAACAGTTCCCAGTTGAATGTGC
ATGTCCGAAAGATTCACGATGGCATCATTTTGCTCCAGGAGGATGTGGTT
GAGGAGGACGAATACATCACCGATGATGCGCCATCCACATCTAAAAAGCG
CCGCCTAAATGAAAATAATGAGTTTATAGAGGAAGCAGATGGGGATGACA
TAGTGATGGAAGATGATGACGAGGAGGCGGACGATTTTATTGACGAGATA
CCAGATGAGGACACACAGAATTAAAAGCTTTCTAGACCAT

BS04842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 2958 CG18011-PA 1..2958 17..2974 14790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-RA 3329 CG18011-RA 48..3005 17..2974 14790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10142385..10143138 17..770 3770 100 Plus
2R 25286936 2R 10145404..10145882 2496..2974 2395 100 Plus
2R 25286936 2R 10144353..10144809 1621..2077 2285 100 Plus
2R 25286936 2R 10143409..10143670 927..1188 1310 100 Plus
2R 25286936 2R 10145116..10145349 2264..2497 1170 100 Plus
2R 25286936 2R 10144872..10145058 2078..2264 935 100 Plus
2R 25286936 2R 10143192..10143348 770..926 785 100 Plus
2R 25286936 2R 10143730..10143882 1189..1341 765 100 Plus
2R 25286936 2R 10143944..10144088 1341..1485 725 100 Plus
2R 25286936 2R 10144142..10144277 1486..1621 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:52:09 has no hits.

BS04842.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:24:20 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 46..3007 17..2979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:47 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..3003 17..2972 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:31 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 46..3001 17..2972 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:58 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
CG18011-RA 48..3003 17..2972 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:58 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10145117..10145349 2265..2497 100 -> Plus
2R 10144872..10145058 2078..2264 100 -> Plus
2R 10142385..10143138 17..770 100 -> Plus
2R 10143193..10143348 771..926 100 -> Plus
2R 10143409..10143670 927..1188 100 -> Plus
2R 10143730..10143882 1189..1341 100 -> Plus
2R 10143945..10144088 1342..1485 100 -> Plus
2R 10144142..10144277 1486..1621 100 -> Plus
2R 10144354..10144809 1622..2077 100 -> Plus
2R 10145406..10145880 2498..2972 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:47 Download gff for BS04842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6031450..6031593 1342..1485 100 -> Plus
arm_2R 6031647..6031782 1486..1621 100 -> Plus
arm_2R 6029890..6030643 17..770 100 -> Plus
arm_2R 6030698..6030853 771..926 100 -> Plus
arm_2R 6030914..6031175 927..1188 100 -> Plus
arm_2R 6031235..6031387 1189..1341 100 -> Plus
arm_2R 6031859..6032314 1622..2077 100 -> Plus
arm_2R 6032377..6032563 2078..2264 100 -> Plus
arm_2R 6032622..6032854 2265..2497 100 -> Plus
arm_2R 6032911..6033385 2498..2972 100   Plus

BS04842.pep Sequence

Translation from 16 to 2973

> BS04842.pep
MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLSRHYQLEVSPD
PQKQQLLCEVCVTNLIRLFDIDELEREREAAKDAAQGKDSKAEEDPIIIT
EVQATPPAAKPAKKTVPSRPLTKVLRPVPIIPTREPSARIRNRAAAASNV
TPDTSRSPEPPETPSTEDAVSKSEPKLVSKVADQEHFSVLIQNILDEEEA
VVEDETAVKEESSEAVQVTEETEAPGQIVILNSEAVTDTNPDENVYIYEH
EDVMDPNLDNVKVKPISCSSRLVAQAEESQSDDDIDEGETSNVVLFNFVD
IKEKDEVDNIPEYLATVVKTSFEKLTFQWCTVCKHCSLKCPTFESLFSHL
SKAHKSRRDVYECPIEGCNKELKGRKFLAMHLVLLHAPVAEIPIYGSCPE
CKLTFSNILQYNKHSCAHVIKKKRGFRSYCEMCSLEFPSWKRFNFHSQFH
LEKHRPRACFVCDYATTNIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSV
FMEHNKSHANVSSTTYSCSECMANFESRGRLNGHMRAMHGSVISCELCSR
EFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACF
GSKIDVELLRDAYVCEYCSSYFKEKDCLQAHRDSGVHKDGVFLCQPCGKE
FPHMKLYRHHLRNYQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLY
THKRRTHESASKQAEKSSKSAQEWVCQFCLKECRSKMSLSVHVARSHNND
NVTCPLCNSSYKSHDALAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVV
HSNKKRYSCSVCQKGFYHKSEMEAHQKLHGQSYSCEQCSFTTRNKKSLSV
HVLGQHYKRFAFECNVCKKRFGRSQGLKTHMQRAHGDKYTCRDYFDGGCG
RTFVNSSQLNVHVRKIHDGIILLQEDVVEEDEYITDDAPSTSKKRRLNEN
NEFIEEADGDDIVMEDDDEEADDFIDEIPDEDTQN*

BS04842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18011-PA 985 CG18011-PA 1..985 1..985 5304 100 Plus
CG5245-PA 501 CG5245-PA 81..436 515..914 354 27 Plus
crol-PF 907 CG14938-PF 219..607 484..914 325 25.3 Plus
crol-PF 907 CG14938-PF 223..670 430..917 322 24.4 Plus
crol-PI 962 CG14938-PI 219..662 484..914 315 23.8 Plus
crol-PE 962 CG14938-PE 219..662 484..914 315 23.8 Plus
crol-PI 962 CG14938-PI 278..727 397..887 304 23.5 Plus
crol-PI 962 CG14938-PI 251..725 430..917 303 23.8 Plus
CG5245-PA 501 CG5245-PA 84..491 398..852 302 24.1 Plus
crol-PI 962 CG14938-PI 223..638 430..919 294 22.3 Plus
crol-PI 962 CG14938-PI 216..606 568..915 234 22.1 Plus
crol-PF 907 CG14938-PF 291..676 345..781 228 23.2 Plus
crol-PI 962 CG14938-PI 335..731 333..781 217 22 Plus
CG5245-PA 501 CG5245-PA 179..490 313..631 163 22.4 Plus