Clone Sequence Records
BS04845.3prime Sequence
952 bp (899 high quality bases) assembled on 2005-12-02
> BS04845.3prime
ATGGTCTAGAAAGCTTTTAGTGATTCCTCAGTGCCTCGTTGATGACACGC
AGAATATCAATTTGCAGTTCGGTAAAAGCCACCGGCTCCAGCTGAGCATT
GCGTATCTTCATGGACACAGCCTTGAAGAACGCACCTATCTCATCGTCCT
CTCCGGAGTTGTGGCCATTGCTGGAGGGATACTCCATATGGGTGGGTTTG
CTGGGCGTAATGGGCGCCGAGTGATAGCGAGACGTGGAAGTAGAGCTTGG
CGTAGTGGCAGCATTCTGGTACCTAGGCGTGGTTGGAGTCTGTATCTCGA
TCTTCTGGAACTCCGCAGTTGATTGAAGCTGCTGATTTTCCAGGCTGGTG
GCCCCGTCGCTGAGCTGCTCTTGCTTGGACATGGCACTGCCAACGCTTGG
AACAGCCATGTAAACGGGTCCATCTTCGTGATCGTAAGTCATTACATGCT
GATCCTGCTGCTGAGGAGGTTGTTCCGCCGCCGTTGTGGTTTCCATCTCC
TCATCCTCATCGTCTTCCACATCATCATCATTATGGTGTACATCTCCGTT
GATGTAATTCTCGATGTCCATGTCGTCATAGGTGGCCACACAGAGTTCAC
TTGCCTGCTGTTGCTGTTGTTGCTGCTGATGCTGTTGTTGCTGTTGGTGC
TGCTCTTCCTGCTGTTGCTGTTGTTGTTGTTGCTCAGCCTTGTGTGGTCC
CGTCAAATGAGGCAGGGTGGGCAAGTTAAGCTGGGAATTCGACGAAGACG
ACTCTAGGGTGATCTGCTGCGTGGGCGGTGAGTGAGACTGGGTCATATGG
TCCTCGAGTTCCCTCACCGGGTCATTTTTGGGTAGCAGCATACTGAGTTG
CGAATCGCTTTCCAGCGTCTTTTGTTGTATGTACTTCTGAAGGAAACTGA
GCGAATTATAGTGCTCCCAACGCGATGTGGCATCTATGTGCATCAGTGTC
CT
BS04845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 2073 | CG8765-RA | 1138..2072 | 952..18 | 4650 | 99.8 | Minus |
| CG8765-PB | 1803 | CG8765-RB | 868..1802 | 952..18 | 4650 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RC | 3076 | CG8765-RC | 1250..2184 | 952..18 | 4660 | 99.9 | Minus |
| CG8765-RB | 3020 | CG8765-RB | 1194..2128 | 952..18 | 4660 | 99.9 | Minus |
| CG8765-RA | 3082 | CG8765-RA | 1256..2190 | 952..18 | 4660 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19684833..19685678 | 18..863 | 4230 | 100 | Plus |
| 3L | 28110227 | 3L | 19685737..19685826 | 863..952 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:44:50 has no hits.
BS04845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:23 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PB | 868..1803 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:00 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PB | 868..1803 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:53:24 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 1256..2195 | 12..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:44:10 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 1256..2195 | 12..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:44:10 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19684828..19685678 | 12..863 | 99 | <- | Plus |
| 3L | 19685738..19685826 | 864..952 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:53:24 Download gff for
BS04845.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19677928..19678778 | 12..863 | 99 | <- | Plus |
| arm_3L | 19678838..19678926 | 864..952 | 98 | | Plus |
BS04845.5prime Sequence
949 bp (825 high quality bases) assembled on 2005-12-02
> BS04845.5prime
GAAGTTATCAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGG
AGCACCAGCAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGT
CTGGGTGAGAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCT
GGTCTCCCAGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCA
GCACCAAGATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGT
TGGTCCGACGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTA
CTGCCGGGAGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGA
AGTATTTCAAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAAT
TACAGAGGGAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGAC
CCCCTTATCGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCC
AGAATCTAAACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCC
ACGCTGCTCGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAA
GCCGGCAGCCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGC
AGCAGCAGCAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCG
AACTGGAACTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCAT
AGTGCAGTGTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACA
ACGAAATAGTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCA
CAATCACGTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGACG
AACGCCGAGGAGGAGGACGACGATCCCATACACACATTTCTCAACATGG
BS04845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 2073 | CG8765-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG8765-PB | 1803 | CG8765-RB | 1..564 | 287..850 | 2820 | 100 | Plus |
| CG8765-PA | 2073 | CG8765-RA | 835..934 | 850..949 | 500 | 100 | Plus |
| CG8765-PB | 1803 | CG8765-RB | 565..664 | 850..949 | 500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 3082 | CG8765-RA | 118..1052 | 16..949 | 4650 | 99.9 | Plus |
| CG8765-RC | 3076 | CG8765-RC | 118..1046 | 16..949 | 4550 | 99.3 | Plus |
| CG8765-RB | 3020 | CG8765-RB | 206..990 | 166..949 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19686096..19686646 | 949..400 | 2705 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19686995..19687236 | 257..16 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 19686795..19686937 | 399..257 | 715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 36..90 | 120 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 19..75 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6765 | 39..75 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6786 | 39..75 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6807 | 39..75 | 113 | 78.4 | Plus |
BS04845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:24 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PA | 1..934 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:02 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-PA | 1..934 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:00:09 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 113..1052 | 10..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:53 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 113..1052 | 10..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:53 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19686096..19686646 | 400..949 | 99 | <- | Minus |
| 3L | 19686795..19686936 | 258..399 | 100 | <- | Minus |
| 3L | 19686995..19687241 | 10..257 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:00:09 Download gff for
BS04845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19679196..19679746 | 400..949 | 99 | <- | Minus |
| arm_3L | 19679895..19680036 | 258..399 | 100 | <- | Minus |
| arm_3L | 19680095..19680341 | 10..257 | 99 | | Minus |
BS04845.complete Sequence
2105 bp assembled on 2008-08-15
GenBank Submission: KX799328
> BS04845.complete
GAAGTTATCAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGG
AGCACCAGCAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGT
CTGGGTGAGAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCT
GGTCTCCCAGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCA
GCACCAAGATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGT
TGGTCCGACGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTA
CTGCCGGGAGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGA
AGTATTTCAAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAAT
TACAGAGGGAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGAC
CCCCTTATCGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCC
AGAATCTAAACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCC
ACGCTGCTCGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAA
GCCGGCAGCCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGC
AGCAGCAGCAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCG
AACTGGAACTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCAT
AGTGCAGTGTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACA
ACGAAATAGTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCA
ACAATCACGTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGAC
GAACGCCGAGGAGGAGGACGACGATCCCATACACACATTTCTCAACATGG
AGAGCTACTTCGAAAAGGAACTGATCACGCTGATCCAGCAGGAAGACATG
ATCTACAACTACGGCAACGAGAACTATCGCAATGCCAAGCTCAAGATGGA
GGTGTGGGAGGAAATCGCCAGAAAACTAAAGAAGTCGGTGAAACAGTGTC
GACTGAAGTGGAAGGCTTTAAGGGACCAATACGCACGCGAACACAAGCGA
TTGAGGACACTGATGCACATAGATGCCACATCGCGTTGGAAGCACTATAA
TTCGCTCAGTTTCCTTCAGAAGTACATACAACAAAAGACGCTGGAAAGCG
ATTCGCAACTCAGTATGCTGCTACCCAAAAATGACCCGGTGAGGGAACTC
GAGGACCATATGACCCAGTCTCACTCACCGCCCACGCAGCAGATCACCCT
AGAGTCGTCTTCGTCGAATTCCCAGCTTAACTTGCCCACCCTGCCTCATT
TGACGGGACCACACAAGGCTGAGCAACAACAACAACAGCAACAGCAGGAA
GAGCAGCACCAACAGCAACAACAGCATCAGCAGCAACAACAGCAACAGCA
GGCAAGTGAACTCTGTGTGGCCACCTATGACGACATGGACATCGAGAATT
ACATCAACGGAGATGTACACCATAATGATGATGATGTGGAAGACGATGAG
GATGAGGAGATGGAAACCACAACGGCGGCGGAACAACCTCCTCAGCAGCA
GGATCAGCATGTAATGACTTACGATCACGAAGATGGACCCGTTTACATGG
CTGTTCCAAGCGTTGGCAGTGCCATGTCCAAGCAAGAGCAGCTCAGCGAC
GGGGCCACCAGCCTGGAAAATCAGCAGCTTCAATCAACTGCGGAGTTCCA
GAAGATCGAGATACAGACTCCAACCACGCCTAGGTACCAGAATGCTGCCA
CTACGCCAAGCTCTACTTCCACGTCTCGCTATCACTCGGCGCCCATTACG
CCCAGCAAACCCACCCATATGGAGTATCCCTCCAGCAATGGCCACAACTC
CGGAGAGGACGATGAGATAGGTGCGTTCTTCAAGGCTGTGTCCATGAAGA
TACGCAATGCTCAGCTGGAGCCGGTGGCTTTTACCGAACTGCAAATTGAT
ATTCTGCGTGTCATCAACGAGGCACTGAGGAATCACTAAAAGCTTTCTAG
ACCAT
BS04845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 2073 | CG8765-PA | 1..2072 | 17..2088 | 10360 | 100 | Plus |
| CG8765-RC | 2067 | CG8765-PC | 1..2066 | 17..2088 | 10235 | 99.7 | Plus |
| CG8765-RB | 1803 | CG8765-PB | 1..1802 | 287..2088 | 9010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-RA | 3082 | CG8765-RA | 118..2190 | 16..2088 | 10365 | 100 | Plus |
| CG8765-RC | 3076 | CG8765-RC | 118..2184 | 16..2088 | 10240 | 99.7 | Plus |
| CG8765-RB | 3020 | CG8765-RB | 206..2128 | 166..2088 | 9615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19684833..19685678 | 2088..1243 | 4230 | 100 | Minus |
| 3L | 28110227 | 3L | 19685958..19686646 | 1088..400 | 3445 | 100 | Minus |
| 3L | 28110227 | 3L | 19686995..19687236 | 257..16 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 19685737..19685892 | 1243..1088 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 19686795..19686937 | 399..257 | 715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 36..90 | 120 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 19..75 | 114 | 66.7 | Plus |
BS04845.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:33 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 118..2200 | 10..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:26 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 119..2189 | 17..2087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:53 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 124..2194 | 17..2087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:17 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8765-RA | 119..2189 | 17..2087 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:17 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19684834..19685678 | 1243..2087 | 100 | <- | Minus |
| 3L | 19685738..19685891 | 1089..1242 | 100 | <- | Minus |
| 3L | 19685958..19686646 | 400..1088 | 100 | <- | Minus |
| 3L | 19686795..19686936 | 258..399 | 100 | <- | Minus |
| 3L | 19686995..19687235 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:26 Download gff for
BS04845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19677934..19678778 | 1243..2087 | 100 | <- | Minus |
| arm_3L | 19678838..19678991 | 1089..1242 | 100 | <- | Minus |
| arm_3L | 19679058..19679746 | 400..1088 | 100 | <- | Minus |
| arm_3L | 19679895..19680036 | 258..399 | 100 | <- | Minus |
| arm_3L | 19680095..19680335 | 17..257 | 100 | | Minus |
BS04845.pep Sequence
Translation from 16 to 2088
> BS04845.pep
METLPCANQLQEHQQPQQQHVNLSIDPSLGENVVSIPKELILISLVSQEQ
SLYNPKHPHYRSTKIKDEKWLEIGSNVGWSDVQCKSKWKAMRDQYCRELK
RAKACSKAVKWKYFKELDFLRPYALARNYRGRSGQTSNGAVGTVTPLSLP
MTTSFSSNSSSQNLNLSGSIKIEDASASTLLDSCSFSSPSSTDKKPAATF
LASHIGAVLQQQQQQQQHQQQMHSQPEANWNYLTDAGGGATPSIIVQCGT
ANTTTVVDTLYNEIVDCVNAANQSSSAATITSNVSTTSAAHNQSTNAEEE
DDDPIHTFLNMESYFEKELITLIQQEDMIYNYGNENYRNAKLKMEVWEEI
ARKLKKSVKQCRLKWKALRDQYAREHKRLRTLMHIDATSRWKHYNSLSFL
QKYIQQKTLESDSQLSMLLPKNDPVRELEDHMTQSHSPPTQQITLESSSS
NSQLNLPTLPHLTGPHKAEQQQQQQQQEEQHQQQQQHQQQQQQQQASELC
VATYDDMDIENYINGDVHHNDDDVEDDEDEEMETTTAAEQPPQQQDQHVM
TYDHEDGPVYMAVPSVGSAMSKQEQLSDGATSLENQQLQSTAEFQKIEIQ
TPTTPRYQNAATTPSSTSTSRYHSAPITPSKPTHMEYPSSNGHNSGEDDE
IGAFFKAVSMKIRNAQLEPVAFTELQIDILRVINEALRNH*
BS04845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8765-PA | 690 | CG8765-PA | 1..690 | 1..690 | 3600 | 100 | Plus |
| CG8765-PC | 688 | CG8765-PC | 1..688 | 1..690 | 3571 | 99.6 | Plus |
| CG8765-PB | 600 | CG8765-PB | 1..600 | 91..690 | 3118 | 100 | Plus |
| CG8765-PB | 600 | CG8765-PB | 229..400 | 42..227 | 207 | 29.1 | Plus |
| CG15365-PC | 821 | CG15365-PC | 261..715 | 210..639 | 183 | 22.5 | Plus |
| CG15365-PA | 821 | CG15365-PA | 261..715 | 210..639 | 183 | 22.5 | Plus |
