Clone Sequence Records
BS04847.3prime Sequence
427 bp (426 high quality bases) assembled on 2005-12-02
> BS04847.3prime
ATGGTCTAGAAAGCTTCTAACCCTTATGCTGCTTAAGATGTCTGTTAAGC
TTAATTTTTAAGTCAAAGGATCTGCCGCAAATGTAGCACGAGATGTACGC
TTTTTCTGGCACCTGTTGGACAGGAGAGCTGTCATTAGAGGTCGCTGAAG
TCCTGCTCTCCTGCTGGGCAGTGCTATCTAATTGAGAAGAAGACTCTAGG
ACGACTCTTTCTTTGGACTCGATGGTTTGCTTCTTGGTTATCTTTGCAAT
GGGCGACGTAGGTATTTCCTGCGTGGTCTTTCTCACTAATGACTGGTTGT
CTGAAGAGCGACGCCTCTTTCTTGTCTGTGTGTGAGTGGCCAGCACATGA
GCCTGCAGCTGCTGGGCCTTCTCGAATGTGTCGCTGCAATATGAGCACTT
AGTGACACTTTCAGTTGGCTCGGTTGA
BS04847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11971-PA | 1767 | CG11971-RA | 1357..1767 | 427..17 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 1441..1863 | 427..6 | 2060 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8990930..8991340 | 17..427 | 2055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:40:09 has no hits.
BS04847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:25 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1358..1767 | 17..426 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:03 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1358..1767 | 17..426 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:00 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 1442..1863 | 6..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:27 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 1442..1863 | 6..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:27 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8990918..8991339 | 6..426 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:00 Download gff for
BS04847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4816640..4817061 | 6..426 | 99 | | Plus |
BS04847.5prime Sequence
494 bp (413 high quality bases) assembled on 2005-12-02
> BS04847.5prime
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAAGGAGATAACAGCGACGAAGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAGGGAGG
BS04847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11971-PA | 1767 | CG11971-RA | 1..401 | 17..417 | 2005 | 100 | Plus |
CG11971-PA | 1767 | CG11971-RA | 406..478 | 422..494 | 315 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 84..562 | 16..494 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8992339..8992631 | 494..202 | 1390 | 98.3 | Minus |
3R | 32079331 | 3R | 8992673..8992866 | 209..16 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:47:18 has no hits.
BS04847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:27 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1..478 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:05 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-PA | 1..478 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:21:17 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 77..562 | 10..494 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:00 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 77..562 | 10..494 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:00 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8992677..8992873 | 10..205 | 98 | | Minus |
3R | 8992339..8992627 | 206..494 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:21:17 Download gff for
BS04847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4818061..4818349 | 206..494 | 98 | <- | Minus |
arm_3R | 4818399..4818595 | 10..205 | 98 | | Minus |
BS04847.complete Sequence
1799 bp assembled on 2009-08-24
GenBank Submission: KX795056
> BS04847.complete
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACA
TGGCCCGAGTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCC
AAAAATTTTGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGA
TGCGTTAACGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGA
CGGTCGACGATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTC
AGATTTACATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCC
GCTTTACTCGCCGGTTGTGTGTTGTAAGCTATGCTTTTACGAATCCCCCG
ACCAGGATGCGCATATGGAGCACATGCGCCGCACCCATCTCCTCAAGGAC
TGGGAATGCCATATTTGCGGCAAAAAGTTCACAAATGCCCAAGAATCGCG
CATCAAGTTTCACATCAAGTATCACAAGCTACAGCGGCACGTTAAGTGTC
CCGTTTGCGGGTTCATCTGCAGCTCCAAGGAGACTCTCAAGGAGCACAAG
CAGGCAGTGCACGTACGCACAAAGTGCACATACTGTGGAAAAACTGTGAA
AAACGCCACTCTACACGCACATTTGAAAAAGCACTTAGAAGAGGGTGAAG
CCGAACTTGCCCAGCAACTGAAAAAATTGGAGCAGCTTCCAGTTAACCTT
CAATCTCAACATTTATCTTCACTGGAAAGCAGTGTCGCCGAAGTCACCAC
GGCTTCTGAGGGCTCAAATATTCCTGGGGAATCCACTGTTCCTGAAGATT
CTAATGTAACCGAAAACTCCAGTGTTCCTTCAATAGAGACTTCCAATCAT
GCGGACATTCAATGTCCAATGGGCCCACCTGCAAACGGAGAAGTTCCTGA
TGTAGCAGATGTAGCTTCACCGTCAACCGAGCCAACTGAAAGTGTCACTA
AGTGCTCATATTGCAGCGACACATTCGAGAAGGCCCAGCAGCTGCAGGCT
CATGTGCTGGCCACTCACACACAGACAAGAAAGAGGCGTCGCTCTTCAGA
CAACCAGTCATTAGTGAGAAAGACCACGCAGGAAATACCTACGTCGCCCA
TTGCAAAGATAACCAAGAAGCAAACCATCGAGTCCAAAGAAAGAGTCGTC
CTAGAGTCTTCTTCTCAATTAGATAGCACTGCCCAGCAGGAGAGCAGGAC
TTCAGCGACCTCTAATGACAGCTCTCCTGTCCAACAGGTGCCAGAAAAAG
CGTACATCTCGTGCTACATTTGCGGCAGATCCTTTGACTTAAAAATTAAG
CTTAACAGACATCTTAAGCAGCATAAGGGTTAGAAGCTTTCTAGACCAT
BS04847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 1767 | CG11971-PA | 1..1767 | 17..1783 | 8835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-RA | 2136 | CG11971-RA | 84..1851 | 16..1783 | 8840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8991790..8992631 | 1043..202 | 4210 | 100 | Minus |
3R | 32079331 | 3R | 8990930..8991623 | 1783..1090 | 3470 | 100 | Minus |
3R | 32079331 | 3R | 8992673..8992866 | 209..16 | 970 | 100 | Minus |
3R | 32079331 | 3R | 8991680..8991727 | 1091..1044 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:31:00 has no hits.
BS04847.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:27 Download gff for
BS04847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11971-RA | 81..1847 | 17..1783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:55 Download gff for
BS04847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 85..1851 | 17..1783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:31 Download gff for
BS04847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(var)3-9-RA | 85..1851 | 17..1783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:31 Download gff for
BS04847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8990930..8991621 | 1092..1783 | 100 | <- | Minus |
3R | 8991680..8991727 | 1044..1091 | 100 | <- | Minus |
3R | 8991790..8992627 | 206..1043 | 100 | <- | Minus |
3R | 8992677..8992865 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:55 Download gff for
BS04847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4816652..4817343 | 1092..1783 | 100 | <- | Minus |
arm_3R | 4817402..4817449 | 1044..1091 | 100 | <- | Minus |
arm_3R | 4817512..4818349 | 206..1043 | 100 | <- | Minus |
arm_3R | 4818399..4818587 | 17..205 | 100 | | Minus |
BS04847.pep Sequence
Translation from 16 to 1782
> BS04847.pep
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*
BS04847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(var)3-9-PA | 588 | CG11971-PA | 1..588 | 1..588 | 3112 | 100 | Plus |
CG7386-PA | 662 | CG7386-PA | 323..576 | 253..499 | 164 | 24.9 | Plus |