Clone BS04847 Report

Search the DGRC for BS04847

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:48
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptE(var)3-9-RA
Protein status:BS04847.pep: full length peptide match
Sequenced Size:1799

Clone Sequence Records

BS04847.3prime Sequence

427 bp (426 high quality bases) assembled on 2005-12-02

> BS04847.3prime
ATGGTCTAGAAAGCTTCTAACCCTTATGCTGCTTAAGATGTCTGTTAAGC
TTAATTTTTAAGTCAAAGGATCTGCCGCAAATGTAGCACGAGATGTACGC
TTTTTCTGGCACCTGTTGGACAGGAGAGCTGTCATTAGAGGTCGCTGAAG
TCCTGCTCTCCTGCTGGGCAGTGCTATCTAATTGAGAAGAAGACTCTAGG
ACGACTCTTTCTTTGGACTCGATGGTTTGCTTCTTGGTTATCTTTGCAAT
GGGCGACGTAGGTATTTCCTGCGTGGTCTTTCTCACTAATGACTGGTTGT
CTGAAGAGCGACGCCTCTTTCTTGTCTGTGTGTGAGTGGCCAGCACATGA
GCCTGCAGCTGCTGGGCCTTCTCGAATGTGTCGCTGCAATATGAGCACTT
AGTGACACTTTCAGTTGGCTCGGTTGA

BS04847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11971-PA 1767 CG11971-RA 1357..1767 427..17 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 1441..1863 427..6 2060 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8990930..8991340 17..427 2055 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:40:09 has no hits.

BS04847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:25 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1358..1767 17..426 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:03 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1358..1767 17..426 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:00 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1442..1863 6..426 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:27 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 1442..1863 6..426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:27 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8990918..8991339 6..426 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:00 Download gff for BS04847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4816640..4817061 6..426 99   Plus

BS04847.5prime Sequence

494 bp (413 high quality bases) assembled on 2005-12-02

> BS04847.5prime
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAAGGAGATAACAGCGACGAAGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAGGGAGG

BS04847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11971-PA 1767 CG11971-RA 1..401 17..417 2005 100 Plus
CG11971-PA 1767 CG11971-RA 406..478 422..494 315 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 84..562 16..494 2320 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8992339..8992631 494..202 1390 98.3 Minus
3R 32079331 3R 8992673..8992866 209..16 970 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:18 has no hits.

BS04847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:58:27 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1..478 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:23:05 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11971-PA 1..478 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:21:17 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 77..562 10..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:00 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 77..562 10..494 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:00 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8992677..8992873 10..205 98   Minus
3R 8992339..8992627 206..494 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:21:17 Download gff for BS04847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4818061..4818349 206..494 98 <- Minus
arm_3R 4818399..4818595 10..205 98   Minus

BS04847.complete Sequence

1799 bp assembled on 2009-08-24

GenBank Submission: KX795056

> BS04847.complete
GAAGTTATCAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATG
AGGACTCCATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGA
ATGGACATGGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGC
CGCCGTCGCAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACA
TAAAGGTTGCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGC
ATTGCCGAGTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGAC
ACAGGAGCAGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCG
TTATTAAACGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATA
TATCTGGATACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACG
CGTGTGTGCCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACA
TGGCCCGAGTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCC
AAAAATTTTGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGA
TGCGTTAACGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGA
CGGTCGACGATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTC
AGATTTACATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCC
GCTTTACTCGCCGGTTGTGTGTTGTAAGCTATGCTTTTACGAATCCCCCG
ACCAGGATGCGCATATGGAGCACATGCGCCGCACCCATCTCCTCAAGGAC
TGGGAATGCCATATTTGCGGCAAAAAGTTCACAAATGCCCAAGAATCGCG
CATCAAGTTTCACATCAAGTATCACAAGCTACAGCGGCACGTTAAGTGTC
CCGTTTGCGGGTTCATCTGCAGCTCCAAGGAGACTCTCAAGGAGCACAAG
CAGGCAGTGCACGTACGCACAAAGTGCACATACTGTGGAAAAACTGTGAA
AAACGCCACTCTACACGCACATTTGAAAAAGCACTTAGAAGAGGGTGAAG
CCGAACTTGCCCAGCAACTGAAAAAATTGGAGCAGCTTCCAGTTAACCTT
CAATCTCAACATTTATCTTCACTGGAAAGCAGTGTCGCCGAAGTCACCAC
GGCTTCTGAGGGCTCAAATATTCCTGGGGAATCCACTGTTCCTGAAGATT
CTAATGTAACCGAAAACTCCAGTGTTCCTTCAATAGAGACTTCCAATCAT
GCGGACATTCAATGTCCAATGGGCCCACCTGCAAACGGAGAAGTTCCTGA
TGTAGCAGATGTAGCTTCACCGTCAACCGAGCCAACTGAAAGTGTCACTA
AGTGCTCATATTGCAGCGACACATTCGAGAAGGCCCAGCAGCTGCAGGCT
CATGTGCTGGCCACTCACACACAGACAAGAAAGAGGCGTCGCTCTTCAGA
CAACCAGTCATTAGTGAGAAAGACCACGCAGGAAATACCTACGTCGCCCA
TTGCAAAGATAACCAAGAAGCAAACCATCGAGTCCAAAGAAAGAGTCGTC
CTAGAGTCTTCTTCTCAATTAGATAGCACTGCCCAGCAGGAGAGCAGGAC
TTCAGCGACCTCTAATGACAGCTCTCCTGTCCAACAGGTGCCAGAAAAAG
CGTACATCTCGTGCTACATTTGCGGCAGATCCTTTGACTTAAAAATTAAG
CTTAACAGACATCTTAAGCAGCATAAGGGTTAGAAGCTTTCTAGACCAT

BS04847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 1767 CG11971-PA 1..1767 17..1783 8835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 84..1851 16..1783 8840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8991790..8992631 1043..202 4210 100 Minus
3R 32079331 3R 8990930..8991623 1783..1090 3470 100 Minus
3R 32079331 3R 8992673..8992866 209..16 970 100 Minus
3R 32079331 3R 8991680..8991727 1091..1044 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:31:00 has no hits.

BS04847.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:27 Download gff for BS04847.complete
Subject Subject Range Query Range Percent Splice Strand
CG11971-RA 81..1847 17..1783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:55 Download gff for BS04847.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 85..1851 17..1783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:31 Download gff for BS04847.complete
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 85..1851 17..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:31 Download gff for BS04847.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8990930..8991621 1092..1783 100 <- Minus
3R 8991680..8991727 1044..1091 100 <- Minus
3R 8991790..8992627 206..1043 100 <- Minus
3R 8992677..8992865 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:55 Download gff for BS04847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4816652..4817343 1092..1783 100 <- Minus
arm_3R 4817402..4817449 1044..1091 100 <- Minus
arm_3R 4817512..4818349 206..1043 100 <- Minus
arm_3R 4818399..4818587 17..205 100   Minus

BS04847.pep Sequence

Translation from 16 to 1782

> BS04847.pep
MEFSADLNGFNEDSIEPCRTCGIYFTMGMDMDQAIVKPIFGSDDAAVADM
AEILEQMNDWNIKVAREDGRPQYMCIACIAEFHRLIKFKRSCVETQEQFG
ELEYQREHNGIVIKREIEPEEEKFCGFIYLDTDEEDNSDEDGSRRVCAVF
DIPHVPIKEEHMARVPLQNSDKFQPPEPKNFASPVDSRFDMIDNDALTSG
MLGPSIEDLSGTVDDGTEDEEEEEEEIVRFTYDDDNDAAAPLPPPLYSPV
VCCKLCFYESPDQDAHMEHMRRTHLLKDWECHICGKKFTNAQESRIKFHI
KYHKLQRHVKCPVCGFICSSKETLKEHKQAVHVRTKCTYCGKTVKNATLH
AHLKKHLEEGEAELAQQLKKLEQLPVNLQSQHLSSLESSVAEVTTASEGS
NIPGESTVPEDSNVTENSSVPSIETSNHADIQCPMGPPANGEVPDVADVA
SPSTEPTESVTKCSYCSDTFEKAQQLQAHVLATHTQTRKRRRSSDNQSLV
RKTTQEIPTSPIAKITKKQTIESKERVVLESSSQLDSTAQQESRTSATSN
DSSPVQQVPEKAYISCYICGRSFDLKIKLNRHLKQHKG*

BS04847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-PA 588 CG11971-PA 1..588 1..588 3112 100 Plus
CG7386-PA 662 CG7386-PA 323..576 253..499 164 24.9 Plus